mRNA_M-pyrifera_M_contig123557.4819.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123557.4819.1
Unique NamemRNA_M-pyrifera_M_contig123557.4819.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: A0A1U7ZSN6_NELNU (uncharacterized protein LOC104595844 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZSN6_NELNU)

HSP 1 Score: 116 bits (290), Expect = 4.100e-27
Identity = 56/101 (55.45%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  196 EVYTDSDIAQLGTCACKYE-DEDSSRRVGFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            E+YT+     LGTC   +    D   + G   R YD   GKTCHQCRQKT  LRTHCS CN ++GQFCG CL  RYGENV E  +  +W CPVCR ICNCS
Sbjct:  189 EIYTEEHDKLLGTCETSWTLFVDGYGKDG--KRVYDPVKGKTCHQCRQKTLGLRTHCSKCNLVQGQFCGDCLYMRYGENVIEANQNPNWICPVCRGICNCS 287          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: A0A2J6L124_LACSA (zf-4CXXC_R1 domain-containing protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6L124_LACSA)

HSP 1 Score: 112 bits (279), Expect = 9.950e-27
Identity = 55/107 (51.40%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  196 EVYTDSDIAQLGT-------CACKYEDEDSSRRVGFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            EVYT+     LG        C   Y+DE +        R YD+  GK+CHQCRQKTT  RT C  CN+++GQFCG CL  RYGENV E +E   W CPVCR ICNCS
Sbjct:  118 EVYTEEHEKALGDHKETWTLCVDGYDDEGN--------RMYDAYAGKSCHQCRQKTTGHRTKCCKCNTVQGQFCGDCLFMRYGENVLEAKENPEWVCPVCRDICNCS 216          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: D8T998_SELML (zf-4CXXC_R1 domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T998_SELML)

HSP 1 Score: 111 bits (278), Expect = 1.680e-26
Identity = 64/123 (52.03%), Postives = 70/123 (56.91%), Query Frame = 1
Query:  157 ASSPQVNRSRR----------VKEVYTDSDIAQLGTCACKYEDEDSSRRVGFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            +SSP   RSRR          + EVYT      LG CA K E +          R YD+ +GKTCHQCRQKT  LRT C  C SL GQFCG CL  RYGENV E    +SW CPVCR ICNCS
Sbjct:   76 SSSPSERRSRRSGRLAGTGGPIPEVYTQEHEKLLG-CA-KEEWQLFVDGYNGGERIYDAFSGKTCHQCRQKTVGLRTFCYECESLHGQFCGDCLFMRYGENVKEALADKSWKCPVCRGICNCS 196          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: F6I7D1_VITVI (zf-4CXXC_R1 domain-containing protein n=3 Tax=Vitis TaxID=3603 RepID=F6I7D1_VITVI)

HSP 1 Score: 111 bits (278), Expect = 4.060e-26
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  289 RQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            R YDS  GKTCHQCRQKT  LRTHCS CN ++GQFCG CL  RYGE+V E+ E  +W CPVCR ICNCS
Sbjct:  113 RIYDSIKGKTCHQCRQKTLGLRTHCSQCNMVQGQFCGDCLYMRYGEHVLESNENPNWICPVCRGICNCS 181          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: W9SKN0_9ROSA (zf-4CXXC_R1 domain-containing protein n=3 Tax=Morus notabilis TaxID=981085 RepID=W9SKN0_9ROSA)

HSP 1 Score: 112 bits (281), Expect = 5.890e-26
Identity = 65/139 (46.76%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  124 RRSSGMRARSPASSPQVNRSRRVKEVYTDSDI-AQLGTCACKYEDE--------DSSRRV------GFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            RRSS ++  +P S  +V+  ++ KE+  D  + A+ G+    Y +E        D S  +          R YDS  GKTCHQCRQKT   RTHCSSCN++RGQFCG CL  RYGE+V E  E  +W CPVCR ICNCS
Sbjct:  102 RRSSRLKNSTPVSYSEVDLVKKDKELGDDESVLAEAGSKPEIYTEEHEKLLGNTDKSWTLFVDGCGSDGKRIYDSVKGKTCHQCRQKTLGYRTHCSSCNAVRGQFCGDCLYMRYGEHVLEAIENPNWICPVCRGICNCS 240          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: A0A7N2N105_QUELO (zf-4CXXC_R1 domain-containing protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2N105_QUELO)

HSP 1 Score: 110 bits (275), Expect = 6.160e-26
Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  196 EVYTDSDIAQLGTCACKYE-DEDSSRRVGFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            E+YT+     LG C   +    D   + G   R YD   G+TCHQCRQKT  LRTHCS C  ++GQFCG CL  RYGENV E  +   W CPVCR ICNCS
Sbjct:  123 EIYTEEHDKLLGDCKSSWTLSVDGYGKDG--ERIYDPVNGETCHQCRQKTLGLRTHCSQCTLVQGQFCGDCLYMRYGENVIEANQNPDWICPVCRGICNCS 221          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: A0A328D774_9ASTE (RING-type domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328D774_9ASTE)

HSP 1 Score: 111 bits (278), Expect = 7.310e-26
Identity = 55/101 (54.46%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  196 EVYTDSDIAQLGTCACKYE-DEDSSRRVGFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            EVYT+     LG+    +    D   + G   R YD  TGKTCHQCRQKT  LRTHCS CN ++GQFCG CL  RYGE+V E  +   W CPVCR ICNCS
Sbjct:  113 EVYTEEHEKLLGSTEMSWTLFVDGCGKDG--KRIYDPVTGKTCHQCRQKTLGLRTHCSHCNMIQGQFCGDCLFMRYGEHVLEANQNPDWRCPVCRGICNCS 211          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: A0A059LK63_9CHLO (Monoamine-oxidase A repressor R1 Zinc-finger domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LK63_9CHLO)

HSP 1 Score: 111 bits (278), Expect = 1.750e-25
Identity = 57/108 (52.78%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  193 KEVYTDSDIAQLGTCACKYE------DEDSSRRVGFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCSS 498
            +E+Y    +  LG CA  +E      D+D  RRV      YD   G+TCHQCRQKT  LRT CS+C SL+G  CG CL  RYGENV E R   SWTCPVCR +CNCS+
Sbjct:  382 EELYGVEHVLALGRCASPWELFVDGYDKDG-RRV------YDPECGQTCHQCRQKTLGLRTACSACGSLQGVLCGDCLFMRYGENVREARADPSWTCPVCRDLCNCSA 482          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: B9HRU9_POPTR (zf-4CXXC_R1 domain-containing protein n=3 Tax=Populus TaxID=3689 RepID=B9HRU9_POPTR)

HSP 1 Score: 109 bits (272), Expect = 2.950e-25
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  196 EVYTDSDIAQLGTCACKYE-DEDSSRRVGFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            E+YT+ D   LG     +  + D   + G   R YD   G+TCHQCRQKT  L THCS CN ++GQFCG CL  RYGENV E  +  +W CPVCR ICNCS
Sbjct:  145 EIYTEEDENLLGDHKTTWTLNVDGCGKDG--RRVYDPEMGETCHQCRQKTLGLHTHCSKCNLVQGQFCGDCLFMRYGENVIEVNQDPNWICPVCRGICNCS 243          
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Match: A0A7C9AXN4_OPUST (zf-4CXXC_R1 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AXN4_OPUST)

HSP 1 Score: 106 bits (265), Expect = 5.260e-25
Identity = 53/101 (52.48%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  196 EVYTDSDIAQLGTCACKYED-EDSSRRVGFAMRQYDSTTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREAESWTCPVCRLICNCS 495
            EVYT+     LG     +    D  R  G   R YD   GKTCHQCRQKT  +RTHCS CN ++GQFCG CL  RYGE+V E  +   W CP CR ICNCS
Sbjct:   29 EVYTEEHEKLLGNTEMPWTFFVDGYRADG--TRIYDPVNGKTCHQCRQKTLGMRTHCSKCNLVQGQFCGDCLYMRYGEHVVEANQNPDWICPPCRGICNCS 127          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123557.4819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U7ZSN6_NELNU4.100e-2755.45uncharacterized protein LOC104595844 n=2 Tax=Nelum... [more]
A0A2J6L124_LACSA9.950e-2751.40zf-4CXXC_R1 domain-containing protein n=2 Tax=Lact... [more]
D8T998_SELML1.680e-2652.03zf-4CXXC_R1 domain-containing protein n=3 Tax=Sela... [more]
F6I7D1_VITVI4.060e-2669.57zf-4CXXC_R1 domain-containing protein n=3 Tax=Viti... [more]
W9SKN0_9ROSA5.890e-2646.76zf-4CXXC_R1 domain-containing protein n=3 Tax=Moru... [more]
A0A7N2N105_QUELO6.160e-2652.48zf-4CXXC_R1 domain-containing protein n=3 Tax=Faga... [more]
A0A328D774_9ASTE7.310e-2654.46RING-type domain-containing protein n=3 Tax=Cuscut... [more]
A0A059LK63_9CHLO1.750e-2552.78Monoamine-oxidase A repressor R1 Zinc-finger domai... [more]
B9HRU9_POPTR2.950e-2552.48zf-4CXXC_R1 domain-containing protein n=3 Tax=Popu... [more]
A0A7C9AXN4_OPUST5.260e-2552.48zf-4CXXC_R1 domain-containing protein n=1 Tax=Opun... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123557contigM-pyrifera_M_contig123557:14..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score118.6
Seed ortholog evalue2.8e-24
Seed eggNOG ortholog4432.XP_010255074.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cell division cycle-associated
EggNOG OGs2CNI6@1,2QWH1@2759,37KXR@33090,3G86U@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.0149217-CDS-M-pyrifera_M_contig123557:13..5171622815754.0149217-CDS-M-pyrifera_M_contig123557:13..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123557 14..517 +
1692277553.56998-CDS-M-pyrifera_M_contig123557:13..5171692277553.56998-CDS-M-pyrifera_M_contig123557:13..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123557 14..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123557.4819.1prot_M-pyrifera_M_contig123557.4819.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123557 14..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123557.4819.1

>prot_M-pyrifera_M_contig123557.4819.1 ID=prot_M-pyrifera_M_contig123557.4819.1|Name=mRNA_M-pyrifera_M_contig123557.4819.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
RRSSERLRGVKAPSYADDMVAQSRSDEHLIRALRRSRTPTRRRSSGMRAR
SPASSPQVNRSRRVKEVYTDSDIAQLGTCACKYEDEDSSRRVGFAMRQYD
STTGKTCHQCRQKTTDLRTHCSSCNSLRGQFCGPCLSWRYGENVHETREA
ESWTCPVCRLICNCSSRN
back to top

mRNA from alignment at M-pyrifera_M_contig123557:14..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123557.4819.1 ID=mRNA_M-pyrifera_M_contig123557.4819.1|Name=mRNA_M-pyrifera_M_contig123557.4819.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig123557:14..517+ (Macrocystis pyrifera P11B4 male)
CGCCGCAGCAGTGAGCGTCTTCGTGGCGTAAAGGCACCTAGCTACGCTGA CGACATGGTGGCGCAGTCGCGCTCTGACGAGCACCTGATTCGCGCGTTGC GAAGGAGTCGCACGCCGACGCGGCGCCGTTCTTCCGGCATGCGCGCGCGC AGCCCGGCGAGTTCTCCGCAGGTGAATCGCAGCAGGCGTGTGAAGGAGGT GTACACAGACAGTGACATTGCGCAGCTGGGCACGTGCGCGTGCAAATACG AGGACGAGGATTCGTCCCGCCGCGTTGGTTTTGCCATGCGCCAGTACGAC TCGACGACGGGCAAGACGTGCCACCAGTGCCGGCAGAAGACGACGGACCT GCGCACGCACTGCTCCAGCTGCAACAGCTTGCGGGGCCAGTTCTGCGGTC CGTGCCTCTCGTGGCGGTACGGCGAGAACGTGCACGAGACGCGGGAGGCG GAGAGCTGGACCTGCCCCGTGTGCCGCCTCATCTGCAACTGCTCGTCCAG GAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123557:14..517+

>mRNA_M-pyrifera_M_contig123557.4819.1 ID=mRNA_M-pyrifera_M_contig123557.4819.1|Name=mRNA_M-pyrifera_M_contig123557.4819.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig123557:14..517+ (Macrocystis pyrifera P11B4 male)
CGCCGCAGCAGTGAGCGTCTTCGTGGCGTAAAGGCACCTAGCTACGCTGA
CGACATGGTGGCGCAGTCGCGCTCTGACGAGCACCTGATTCGCGCGTTGC
GAAGGAGTCGCACGCCGACGCGGCGCCGTTCTTCCGGCATGCGCGCGCGC
AGCCCGGCGAGTTCTCCGCAGGTGAATCGCAGCAGGCGTGTGAAGGAGGT
GTACACAGACAGTGACATTGCGCAGCTGGGCACGTGCGCGTGCAAATACG
AGGACGAGGATTCGTCCCGCCGCGTTGGTTTTGCCATGCGCCAGTACGAC
TCGACGACGGGCAAGACGTGCCACCAGTGCCGGCAGAAGACGACGGACCT
GCGCACGCACTGCTCCAGCTGCAACAGCTTGCGGGGCCAGTTCTGCGGTC
CGTGCCTCTCGTGGCGGTACGGCGAGAACGTGCACGAGACGCGGGAGGCG
GAGAGCTGGACCTGCCCCGTGTGCCGCCTCATCTGCAACTGCTCGTCCAG
GAACCGCCGCAGCAGTGAGCGTCTTCGTGGCGTAAAGGCACCTAGCTACG
CTGACGACATGGTGGCGCAGTCGCGCTCTGACGAGCACCTGATTCGCGCG
TTGCGAAGGAGTCGCACGCCGACGCGGCGCCGTTCTTCCGGCATGCGCGC
GCGCAGCCCGGCGAGTTCTCCGCAGGTGAATCGCAGCAGGCGTGTGAAGG
AGGTGTACACAGACAGTGACATTGCGCAGCTGGGCACGTGCGCGTGCAAA
TACGAGGACGAGGATTCGTCCCGCCGCGTTGGTTTTGCCATGCGCCAGTA
CGACTCGACGACGGGCAAGACGTGCCACCAGTGCCGGCAGAAGACGACGG
ACCTGCGCACGCACTGCTCCAGCTGCAACAGCTTGCGGGGCCAGTTCTGC
GGTCCGTGCCTCTCGTGGCGGTACGGCGAGAACGTGCACGAGACGCGGGA
GGCGGAGAGCTGGACCTGCCCCGTGTGCCGCCTCATCTGCAACTGCTCGT
CCAGGAAC
back to top