mRNA_M-pyrifera_M_contig123530.4810.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123530.4810.1
Unique NamemRNA_M-pyrifera_M_contig123530.4810.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A3C1KMS4_9GAMM (FliH domain-containing protein n=6 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KMS4_9GAMM)

HSP 1 Score: 243 bits (620), Expect = 7.480e-80
Identity = 131/144 (90.97%), Postives = 139/144 (96.53%), Query Frame = 1
Query:   10 EATARELGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVVRALRESRGAVGGAES 441
            EATA EL ALL+S+ATPFRQQ SGLLRELSELVV+VATAVV RELETSSGA++AVLAEALELLEAVEG VDVHLHPADAAL+REWLAD+LPKLAVTLHTDAAL+RGGCRVATAESYVDASTERRLDDVVRALRESRGAVGGAES
Sbjct:   56 EATANELAALLQSMATPFRQQESGLLRELSELVVRVATAVVGRELETSSGAVDAVLAEALELLEAVEGPVDVHLHPADAALVREWLADNLPKLAVTLHTDAALLRGGCRVATAESYVDASTERRLDDVVRALRESRGAVGGAES 199          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A2E7C717_9GAMM (Flagellar assembly protein FliH n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C717_9GAMM)

HSP 1 Score: 211 bits (538), Expect = 2.380e-67
Identity = 113/136 (83.09%), Postives = 126/136 (92.65%), Query Frame = 1
Query:   28 LGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVVRALRESRGAVGGA 435
            L ALL ++A PFRQQ + LLRELSELVV+VATAVV+RELETS GAI+ VLAEALE+LEAVEG VDVHLHPADAAL+REWLA+ LPKLAVTLHTDA L+RGGCRVATAESYVDASTERRL++V+RALRESRGAVGGA
Sbjct:   63 LAALLGNMAAPFRQQEADLLRELSELVVRVATAVVRRELETSPGAIQDVLAEALEILEAVEGPVDVHLHPADAALVREWLANELPKLAVTLHTDATLLRGGCRVATAESYVDASTERRLEEVLRALRESRGAVGGA 198          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A3M0Z390_9GAMM (Flagellar assembly protein FliH (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M0Z390_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 1.160e-18
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   10 EATARELGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDV 393
            +A AR+LGALL                 L++L + +A  V++REL T  G + AV+ EAL +L A    V VHLHP DAAL+R+ LA+ + +    +  D AL RGGCRV T  S +DA+ ERRL  +
Sbjct:   73 QARARQLGALLXXXXXXXXXXXXXXXXXLAQLALAIAKLVIRRELATHPGEVVAVIREALGILPAGARRVRVHLHPEDAALVRQLLAEGVEEEGWRVVEDPALSRGGCRVVTESSQIDATLERRLQAI 200          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A7X7PUZ1_9GAMM (Flagellar assembly protein FliH n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7X7PUZ1_9GAMM)

HSP 1 Score: 86.3 bits (212), Expect = 4.920e-18
Identity = 54/147 (36.73%), Postives = 80/147 (54.42%), Query Frame = 1
Query:    1 AKGEATARELGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVVRA-LRESRGAVGGAE 438
            A+  A    L  ++ ++A P +     +  EL+ L + VA  +V+REL      + A++ E + LL A    V VHLHP DAA++RE LA +    A TL  D  + RGGCRV T  +++DA  E R++ V+   L + RGA  G E
Sbjct:   63 AQANAQVARLEQIVNALAEPLKDVDEQVETELTHLALAVARQLVRRELRVDPAQVIAIIRETIALLPAAARDVRVHLHPEDAAVVRERLAATTTDRAWTLVEDPVMTRGGCRVTTEHAHIDARLETRINAVISTILGDERGAPRGGE 209          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A1A6C5I6_9GAMM (Flagellar assembly protein FliH n=2 Tax=Acidihalobacter prosperus TaxID=160660 RepID=A0A1A6C5I6_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 4.970e-18
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   28 LGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVV-RALRESR 417
            L  +++++A P  + G  +  EL  L V +A  +V+REL TSSG I AV+ EAL+ L +    V V LHP DA L+RE + +   + A  +  DAAL RGGCRV +  S VDA+ E RL+ +  R L +SR
Sbjct:   62 LDEIMQALARPLDEAGERVGDELLPLAVAIARQLVRRELATSSGEIVAVVREALQALPSYASDVRVELHPDDARLIREAMPEGEGERAWRVVEDAALARGGCRVRSDVSRVDATVEHRLNQIAARVLGDSR 192          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A3N1Y8R3_9GAMM (Flagellar assembly protein FliH n=1 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1Y8R3_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 6.780e-18
Identity = 60/141 (42.55%), Postives = 79/141 (56.03%), Query Frame = 1
Query:   19 ARELGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVVRAL----RESRGAVG 429
            AR L AL + +A P +     + REL +L + VA  +V+REL T  G + AV+ EAL  L   E  V VHLHP DAAL+RE L+ S  + A  +  D  + RGGCRV T  S +DA+ E RL  +   L    RE+ G  G
Sbjct:   73 ARRLEALCDLLARPLQALDEEVERELVQLALAVAQQLVRRELRTDPGEVVAVVREALAALPVAERLVRVHLHPEDAALVREALSLSGEERAWKVVEDPTITRGGCRVETDVSRLDATVENRLAVIAARLLGGEREADGHAG 213          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A7C3QCI7_9GAMM (Flagellar assembly protein FliH n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C3QCI7_9GAMM)

HSP 1 Score: 84.3 bits (207), Expect = 2.580e-17
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    4 KGEATARELGALLESIAT----PFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVVRAL 405
            +G A ARE  A LE I      P R+    ++ EL+ L + +A  +++RE++   G + A + +A+  L A    V +HL+P D  L+RE LA+ +      +  D  L RGGC+V T  S++DAS ERRL  VV  L
Sbjct:   63 QGRALAREQAARLERICAQLEAPLRELDKTVIDELTRLAIVIARHIIRREIKADPGQVVAAIEQAVGELPAASRGVRLHLNPEDGVLVRELLAERIGAAGWEIVDDPLLTRGGCKVTTESSHIDASVERRLSQVVAEL 200          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A1D8IPP1_9GAMM (Flagellar assembly protein FliH n=1 Tax=Acidihalobacter yilgarnensis TaxID=2819280 RepID=A0A1D8IPP1_9GAMM)

HSP 1 Score: 83.6 bits (205), Expect = 6.290e-17
Identity = 55/131 (41.98%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   28 LGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVV-RALRESR 417
            L  +L ++A P  + G  +  EL  L V +A  +V+REL TS G I AV+ EAL+ L +    V + LHP DA L+RE + +   + A  +  DAAL RGGCRV +  S VDA+ E RL+ +  R L +SR
Sbjct:   87 LDEILYTLARPLEEMGERVGEELLALTVAIARQLVRRELATSPGEIVAVVREALQALPSYASDVRLELHPDDARLVREIMPEGEGEHAWRVVEDAALARGGCRVRSDVSRVDATVEHRLNQIAARVLGDSR 217          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A7C5TPP1_9GAMM (Flagellar assembly protein FliH n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5TPP1_9GAMM)

HSP 1 Score: 83.2 bits (204), Expect = 7.440e-17
Identity = 58/135 (42.96%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    4 KGEATARE----LGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVV 396
            +GEA  R     L  +L+++A P  +    + REL  L V +A  +V+REL T  G + A + EAL  L A    V V LHP DAAL+RE L       A T+  D  L RGGCRV T  S VDA+ E RL  VV
Sbjct:   55 RGEAEVRARVAALERVLDALAAPLAEVDEAVERELVALAVAMARQIVRRELRTDPGEVVAAVREALGALPAGAREVRVVLHPEDAALVRERLVGGEQGRAWTIEEDPTLTRGGCRVVTPTSEVDATLEHRLGAVV 189          
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Match: A0A1Z4VQE7_9GAMM (Flagellar assembly protein FliH n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z4VQE7_9GAMM)

HSP 1 Score: 82.4 bits (202), Expect = 1.360e-16
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   13 ATARELGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELETSSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTLHTDAALMRGGCRVATAESYVDASTERRLDDVVRAL 405
            A   ELG L++++A P  Q    + ++L +LVV +A  +++REL T  G I AV+ EA+ LL     +V +HLHP DA L+R  L+ S  +    +  D  + RGGC+V +  S +DA+ E R++ V+  L
Sbjct:   69 ARVHELGHLMQTLARPLEQLDETVEQQLVDLVVLIARQLIRRELRTEPGEILAVIREAMALLPLAATNVRLHLHPEDAELVRSNLSLSSEEQTWRVVEDPVIARGGCKVMSETSQIDATLENRINAVIARL 199          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123530.4810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KMS4_9GAMM7.480e-8090.97FliH domain-containing protein n=6 Tax=Halieaceae ... [more]
A0A2E7C717_9GAMM2.380e-6783.09Flagellar assembly protein FliH n=1 Tax=Haliea sp.... [more]
A0A3M0Z390_9GAMM1.160e-1842.19Flagellar assembly protein FliH (Fragment) n=1 Tax... [more]
A0A7X7PUZ1_9GAMM4.920e-1836.73Flagellar assembly protein FliH n=1 Tax=Xanthomona... [more]
A0A1A6C5I6_9GAMM4.970e-1842.75Flagellar assembly protein FliH n=2 Tax=Acidihalob... [more]
A0A3N1Y8R3_9GAMM6.780e-1842.55Flagellar assembly protein FliH n=1 Tax=Inmirania ... [more]
A0A7C3QCI7_9GAMM2.580e-1736.96Flagellar assembly protein FliH n=1 Tax=Chromatial... [more]
A0A1D8IPP1_9GAMM6.290e-1741.98Flagellar assembly protein FliH n=1 Tax=Acidihalob... [more]
A0A7C5TPP1_9GAMM7.440e-1742.96Flagellar assembly protein FliH n=1 Tax=Chromatial... [more]
A0A1Z4VQE7_9GAMM1.360e-1637.40Flagellar assembly protein FliH n=3 Tax=Gammaprote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123530contigM-pyrifera_M_contig123530:78..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score244.6
Seed ortholog evalue2.9e-62
Seed eggNOG ortholog1121937.AUHJ01000002_gene3512
Preferred namefliH
KEGG koko:K02411
KEGG TC3.A.6.2
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Flagellar biosynthesis type III secretory pathway protein
EggNOG OGs1QD77@1224,1S7CU@1236,464H9@72275,COG1317@1,COG1317@2
COG Functional cat.N
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035,ko02044
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.6361487-CDS-M-pyrifera_M_contig123530:77..5211622815753.6361487-CDS-M-pyrifera_M_contig123530:77..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123530 78..521 -
1692277553.4133189-CDS-M-pyrifera_M_contig123530:77..5211692277553.4133189-CDS-M-pyrifera_M_contig123530:77..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123530 78..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123530.4810.1prot_M-pyrifera_M_contig123530.4810.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123530 78..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123530.4810.1

>prot_M-pyrifera_M_contig123530.4810.1 ID=prot_M-pyrifera_M_contig123530.4810.1|Name=mRNA_M-pyrifera_M_contig123530.4810.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
AKGEATARELGALLESIATPFRQQGSGLLRELSELVVQVATAVVQRELET
SSGAIEAVLAEALELLEAVEGSVDVHLHPADAALMREWLADSLPKLAVTL
HTDAALMRGGCRVATAESYVDASTERRLDDVVRALRESRGAVGGAES*
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mRNA from alignment at M-pyrifera_M_contig123530:78..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123530.4810.1 ID=mRNA_M-pyrifera_M_contig123530.4810.1|Name=mRNA_M-pyrifera_M_contig123530.4810.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig123530:78..521- (Macrocystis pyrifera P11B4 male)
GCCAAAGGCGAAGCCACGGCGCGGGAACTTGGGGCCCTGCTGGAAAGTAT TGCAACGCCGTTTCGACAGCAGGGGTCCGGTTTGCTGCGGGAGCTGTCGG AGCTGGTGGTGCAGGTGGCGACCGCGGTGGTCCAGCGCGAACTGGAAACA TCGTCCGGCGCCATCGAGGCCGTGCTGGCCGAGGCACTGGAACTGCTCGA AGCGGTAGAGGGGTCGGTTGACGTGCATCTGCATCCTGCTGATGCTGCGC TGATGCGTGAGTGGCTGGCGGATAGCCTGCCCAAGCTGGCGGTCACCTTG CACACGGATGCCGCCCTGATGCGCGGCGGTTGCCGCGTGGCCACCGCGGA AAGTTATGTCGACGCTTCCACTGAGCGCCGTCTCGACGACGTGGTGCGCG CGCTGCGCGAGAGTCGCGGCGCGGTCGGCGGAGCGGAGTCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123530:78..521-

>mRNA_M-pyrifera_M_contig123530.4810.1 ID=mRNA_M-pyrifera_M_contig123530.4810.1|Name=mRNA_M-pyrifera_M_contig123530.4810.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig123530:78..521- (Macrocystis pyrifera P11B4 male)
GCCAAAGGCGAAGCCACGGCGCGGGAACTTGGGGCCCTGCTGGAAAGTAT
TGCAACGCCGTTTCGACAGCAGGGGTCCGGTTTGCTGCGGGAGCTGTCGG
AGCTGGTGGTGCAGGTGGCGACCGCGGTGGTCCAGCGCGAACTGGAAACA
TCGTCCGGCGCCATCGAGGCCGTGCTGGCCGAGGCACTGGAACTGCTCGA
AGCGGTAGAGGGGTCGGTTGACGTGCATCTGCATCCTGCTGATGCTGCGC
TGATGCGTGAGTGGCTGGCGGATAGCCTGCCCAAGCTGGCGGTCACCTTG
CACACGGATGCCGCCCTGATGCGCGGCGGTTGCCGCGTGGCCACCGCGGA
AAGTTATGTCGACGCTTCCACTGAGCGCCGTCTCGACGACGTGGTGCGCG
CGCTGCGCGAGAGTCGCGGCGCGGTCGGCGGAGCGGAGTCTTGAGCCAAA
GGCGAAGCCACGGCGCGGGAACTTGGGGCCCTGCTGGAAAGTATTGCAAC
GCCGTTTCGACAGCAGGGGTCCGGTTTGCTGCGGGAGCTGTCGGAGCTGG
TGGTGCAGGTGGCGACCGCGGTGGTCCAGCGCGAACTGGAAACATCGTCC
GGCGCCATCGAGGCCGTGCTGGCCGAGGCACTGGAACTGCTCGAAGCGGT
AGAGGGGTCGGTTGACGTGCATCTGCATCCTGCTGATGCTGCGCTGATGC
GTGAGTGGCTGGCGGATAGCCTGCCCAAGCTGGCGGTCACCTTGCACACG
GATGCCGCCCTGATGCGCGGCGGTTGCCGCGTGGCCACCGCGGAAAGTTA
TGTCGACGCTTCCACTGAGCGCCGTCTCGACGACGTGGTGCGCGCGCTGC
GCGAGAGTCGCGGCGCGGTCGGCGGAGCGGAGTCTTGA
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