mRNA_M-pyrifera_M_contig123527.4809.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A7S1T4K8_9RHOD (Splicing factor U2AF subunit n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4K8_9RHOD) HSP 1 Score: 113 bits (283), Expect = 3.690e-26 Identity = 70/176 (39.77%), Postives = 102/176 (57.95%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAP-SRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T +PDGPNKVF+GG+P H+++ Q+ EL G L F++++D N G KGFGF EYA+P+V D AC KL+ ++LG L RR+ A A V S+++NL+ LG PV +S A A + +P PL P + +L L N VS D+++DD + +I E
Sbjct: 282 GIVSTQVPDGPNKVFIGGIPYHLTEDQIKELLQSFGPLAAFNLIKDSNTGLSKGFGFFEYADPSVIDIACEKLNEMQLGRNKLTVRRA---------ATSAAXXXXXXXXGVGSSLSNLMPLGGPVLTSSIASAANAIATTSPATPLRPPTAILQLENMVSEDELRDDDEFADIQE 448
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A8K1C271_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C271_PYTOL) HSP 1 Score: 110 bits (275), Expect = 4.960e-25 Identity = 66/177 (37.29%), Postives = 103/177 (58.19%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGL-PVASSLAAVRAPGVDEAAPGGPLA-PSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++ D P+K+F+GG+P H++D QV EL G L+ F +V++ N KG+GF EY +P VTD AC L+ ++LGDKTL RR+M Q A+ +V + L++GL P ++L + G P PL PSRV+ LLN V+ D+++DD ++ +I++
Sbjct: 321 GIVSTTVQDSPHKIFVGGIPYHLNDDQVKELLQAFGPLKSFHLVKELNTNMSKGYGFCEYLDPNVTDAACIGLNDMKLGDKTLTVRRAMS------------QENAKAVASAAGSVNSGLSMGLDPTTAALQTISMAGFGLGIPSAPLGNPSRVIVLLNMVTADELEDDEEYNDILD 485
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A066W2Z9_TILAU (Uncharacterized protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066W2Z9_TILAU) HSP 1 Score: 110 bits (275), Expect = 6.570e-25 Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDH-NGACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARR----SMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++PD PNK+F+GGLP +++D+QVMEL G LR F++VR+ NG KGF F EY +P++TD AC+ L+ + LGD+ L+ +R S K + GG A P+G A + GV AA P+R + +LN V+ D++ DD+++ EIVE
Sbjct: 432 GVVSTNVPDSPNKIFIGGLPTYLNDEQVMELLKAFGELRAFNLVREQGNGPSKGFAFCEYVDPSITDLACQGLNDMELGDRRLVVQRASLGSGKGNAGGTPVAAPPRGIAAXXXXXXXSFVG------------------GVGGAAAEEAGEPTRCMQMLNMVTQDELTDDQEYSEIVE 592
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A5C3EHI4_9BASI (Related to pre-mRNA splicing factor U2AF large chain n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EHI4_9BASI) HSP 1 Score: 109 bits (273), Expect = 1.200e-24 Identity = 65/175 (37.14%), Postives = 101/175 (57.71%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++PD P+K+F+GGLP +++D QV+EL G LR F++V+D GA KGF F EY + A+TD AC+ L+G+ LGD+ L+ +R A G + A+ + +T AN LG V SSL G D P + + +LN V+ ++++DD ++ +IVE
Sbjct: 443 GVISTNVPDSPHKIFVGGLPTYLNDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFCEYVDTALTDLACQGLNGMELGDRNLVVQR-------------ASVGSEKKAQAIAATGANAGTLGSAVPSSLQQFAGEGGDAGEP------TSCMVMLNMVTPEELQDDEEYADIVE 598
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A316YZD0_9BASI (Uncharacterized protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316YZD0_9BASI) HSP 1 Score: 109 bits (272), Expect = 1.440e-24 Identity = 65/175 (37.14%), Postives = 102/175 (58.29%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDH-NGACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++PDGPNK+++GGLP ++ D+QV+EL G LR F++VR++ NGA KG+ F EY + A+T+ AC L+ + LGD+ L+ +R+ + + R G QP L L LPVA++ GP P+R + +LN V+ D++ DD ++GEI+E
Sbjct: 345 GVISTNVPDGPNKIYVGGLPTYLQDEQVIELLKAFGELRAFNLVRENGNGASKGYAFCEYVDAALTEVACAGLNDMELGDRRLVVQRASMSLD--RRPMPTTVGGGQP-----------LGLALPVAAA---------------GPAEPTRAMMMLNMVTPDELLDDVEYGEILE 491
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A0K3CPQ8_RHOTO (BY PROTMAP: gi|472585603|gb|EMS23154.1| splicing factor U2AF 65 kDa subunit [Rhodosporidium toruloides NP11] gi|647400712|emb|CDR46411.1| RHTO0S12e04170g1_1 [Rhodosporidium toruloides] n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CPQ8_RHOTO) HSP 1 Score: 109 bits (272), Expect = 1.460e-24 Identity = 74/180 (41.11%), Postives = 103/180 (57.22%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQG-----PAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++PD NK+F+GGLP++++D QVMEL G LR F++V++ GA KGF F EY +PAVTD AC+ L+G+ LGD+ L+ +R A G A P G P P + L P AS LAA GG P+RVL +LN VS+D++ +D+ + EIVE
Sbjct: 369 GVVSTNVPDTVNKIFIGGLPSYLTDDQVMELLKSFGELRAFNLVKEGGTGASKGFAFCEYVDPAVTDIACQGLNGMELGDRYLVVQR---AAIGANPAKHGPPGSGIGFPDMPPGAIPG-------LNQPPASILAAGE---------GGEGQPTRVLQVLNMVSVDELANDQDYEEIVE 529
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: R9P966_PSEHS (Splicing factor, subunit n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9P966_PSEHS) HSP 1 Score: 107 bits (268), Expect = 5.630e-24 Identity = 65/176 (36.93%), Postives = 103/176 (58.52%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLG-LPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++PD P+K+F+GGLP +++D QV+EL G LR F++V+D GA KGF F EY +PA+TD AC+ L+G+ LGD+ L+ +R A G + A+ + +T AN +LG V SS+ G D P + + +LN V+ ++++DD ++ +IVE
Sbjct: 447 GVISTNVPDSPHKIFVGGLPTYLTDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFCEYVDPALTDLACQGLNGMELGDRNLVVQR-------------ASVGSEKKAQAIAATGANAGSLGGAAVPSSVQKFAGEGGDAGEP------TSCMVMLNMVTPEELQDDEEYADIVE 603
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A2S5BFF7_9BASI (Uncharacterized protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BFF7_9BASI) HSP 1 Score: 107 bits (266), Expect = 9.370e-24 Identity = 66/175 (37.71%), Postives = 104/175 (59.43%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++PD NK+F+GGLP++++D+QVMEL G LR F++V++ GA KGF F EY +P VT+ AC+ L+G+ LGD+ L+ +R+ + +GG+ G P + A P AS +A+ + G P+RVL +LN VS+D++ +D+ + EIVE
Sbjct: 365 GVVSTNVPDTVNKIFVGGLPSYLNDEQVMELLKSFGELRAFNLVKEGGTGASKGFAFCEYVDPNVTEVACQGLNGMELGDRFLVVQRA-QIGQGGQRIGGPGMGSDMPGXXXXQSTA-------PPASIMASAQGEGE----------PTRVLQILNMVSVDELTNDQDYEEIVE 521
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A180H444_PUCT1 (Uncharacterized protein n=2 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180H444_PUCT1) HSP 1 Score: 107 bits (266), Expect = 1.010e-23 Identity = 64/177 (36.16%), Postives = 98/177 (55.37%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHNGA---CKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLGLPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++PD PNK+F+GGLP++++D QVMEL G L+ F++V+D + KGF F EY +P +TD AC+ L+G+ LGD+ L+ +R+ + P G N N A A A V A GG +RVL +LN V+ +++ DD+++GEI+E
Sbjct: 397 GVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVDPDLTDIACQGLNGMELGDRYLVVQRAQIGQNAKKEKENNPDGQR-----------NNYNQFNTFAGGQATAAASSVLAAVKGGEGEKTRVLQMLNMVNQEELVDDQEYGEILE 562
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Match: A0A0D1CHB4_USTMA (Uncharacterized protein n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1CHB4_USTMA) HSP 1 Score: 107 bits (266), Expect = 1.050e-23 Identity = 65/176 (36.93%), Postives = 103/176 (58.52%), Query Frame = 1
Query: 1 GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHN-GACKGFGFLEYAEPAVTDEACRKLSGVRLGDKTLLARRSMKAHEGGRFAARAPQGPAQPARIVRSTVANLLNLG-LPVASSLAAVRAPGVDEAAPGGPLAPSRVLALLNAVSLDDVKDDRKHGEIVE 522
G + T++PD P+K+F+GGLP +++D QV+EL G LR F++V+D GA KGF F EY +PA+TD AC+ L+G+ LGD+ L+ +R A G + A+ + +T AN+ LG V SS+ G D P + + +LN V+ ++++DD ++ +IVE
Sbjct: 451 GVISTNVPDSPHKIFVGGLPTYLNDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFCEYVDPALTDLACQGLNGMELGDRNLVVQR-------------ASVGSEKKAQALAATGANMGALGGAAVPSSVQKFAGDGGDAGEP------TTCMVMLNMVTPEELQDDEEYADIVE 607 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123527.4809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig123527.4809.1 >prot_M-pyrifera_M_contig123527.4809.1 ID=prot_M-pyrifera_M_contig123527.4809.1|Name=mRNA_M-pyrifera_M_contig123527.4809.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp GPLLTSIPDGPNKVFLGGLPAHVSDQQVMELAAKHGRLRGFSVVRDHNGAback to top mRNA from alignment at M-pyrifera_M_contig123527:2..523+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig123527.4809.1 ID=mRNA_M-pyrifera_M_contig123527.4809.1|Name=mRNA_M-pyrifera_M_contig123527.4809.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig123527:2..523+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig123527:2..523+ >mRNA_M-pyrifera_M_contig123527.4809.1 ID=mRNA_M-pyrifera_M_contig123527.4809.1|Name=mRNA_M-pyrifera_M_contig123527.4809.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig123527:2..523+ (Macrocystis pyrifera P11B4 male)back to top |