mRNA_M-pyrifera_M_contig123512.4807.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123512.4807.1
Unique NamemRNA_M-pyrifera_M_contig123512.4807.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123512.4807.1 vs. uniprot
Match: A0A6H5KTE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE4_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.280e-39
Identity = 59/73 (80.82%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   49 MACLPFSTNNYGDAGTWCSITAKDLKSLEWGTFWRFSVIYAPLWICVAINGYMCVKVYRAMRGLEAAMVAYAD 267
            MACLP +T+NYGDAG WCSIT+KDLKSLEWGTFWRFSVIY PLW+CV +NGYMC+KV+RAMRG EAAMVAY +
Sbjct:    1 MACLPITTDNYGDAGAWCSITSKDLKSLEWGTFWRFSVIYVPLWVCVGVNGYMCIKVHRAMRGFEAAMVAYVE 73
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BLAST of mRNA_M-pyrifera_M_contig123512.4807.1 vs. uniprot
Match: D8LGC7_ECTSI (Related to G-protein coupled receptors n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC7_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.450e-29
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 KRFRTVMAYCWLVPLVMACLPFSTNNYGDAGTWCSITAKDLKSLEWGTFWRFSVIYAPLWICVAINGYM 207
            +RF TVMAYCWL+PL MACLPF+T+NYG+AG WCSIT+KDLKSLEWGTFWRF+VIY PL    A+  Y+
Sbjct:   64 ERFWTVMAYCWLIPLGMACLPFTTDNYGEAGAWCSITSKDLKSLEWGTFWRFAVIYVPLVFEAAMVAYV 132
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BLAST of mRNA_M-pyrifera_M_contig123512.4807.1 vs. uniprot
Match: A0A7S2H8S1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8S1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.110e-8
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:   31 WLVPLVMACLPFSTNNYGDAGTWCSITAKDLKSLEWGTFWRFSVIYAPLWICVAINGYMCVKVYRAMRGLEAAMVA 258
            W +   ++ LPFSTN+YG++G+WC I     K  E GT+WR++  Y  LWI    N Y    V + + G     VA
Sbjct:   66 WGISAFVSFLPFSTNSYGESGSWCWI-----KGDEAGTYWRYAAFYVLLWIIFFCNVYCYSVVRKTINGFVKVSVA 136
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BLAST of mRNA_M-pyrifera_M_contig123512.4807.1 vs. uniprot
Match: A0A1S3KDJ8_LINUN (cyclic AMP receptor-like protein A n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KDJ8_LINUN)

HSP 1 Score: 59.7 bits (143), Expect = 7.350e-8
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   28 CWLVPLVMACLPFSTNNYGDAGTWCSITAKDLKSLEWGTFWRFSVIYAPLWICVAI 195
            CW++P++++CLPF+ + YG +G WC IT       EW   WRF + Y PL++ +A+
Sbjct:  144 CWVIPIIISCLPFAGDRYGPSGAWCWIT-------EWP--WRFGIWYVPLFLIIAL 190
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BLAST of mRNA_M-pyrifera_M_contig123512.4807.1 vs. uniprot
Match: UPI00165245D6 (cyclic AMP receptor-like protein A n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165245D6)

HSP 1 Score: 54.7 bits (130), Expect = 4.030e-6
Identity = 23/58 (39.66%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   19 MAYCWLVPLVMACLPFSTNNYGDAGTWCSITAKDLKSLEWGTFWRFSVIYAPLWICVA 192
            +  CW+VPL+++CLPF+ + YG AG WC I  +D+        WR  + Y PL++ +A
Sbjct:  124 LGICWVVPLIISCLPFAGDVYGPAGAWCWII-EDIS-------WRIGMWYGPLFVIIA 173
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123512.4807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KTE4_9PHAE1.280e-3980.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGC7_ECTSI1.450e-2972.46Related to G-protein coupled receptors n=1 Tax=Ect... [more]
A0A7S2H8S1_9STRA3.110e-838.16Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1S3KDJ8_LINUN7.350e-841.07cyclic AMP receptor-like protein A n=2 Tax=Lingula... [more]
UPI00165245D64.030e-639.66cyclic AMP receptor-like protein A n=1 Tax=Aplysia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123512contigM-pyrifera_M_contig123512:125..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue6e-08
Seed eggNOG ortholog2880.D8LJZ4
Preferred nameGCR1
KEGG koko:K08467
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000278,GO:0001101,GO:0003006,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005887,GO:0006082,GO:0006109,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0007186,GO:0007202,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009314,GO:0009416,GO:0009628,GO:0009637,GO:0009642,GO:0009645,GO:0009719,GO:0009725,GO:0009735,GO:0009737,GO:0009738,GO:0009741,GO:0009742,GO:0009755,GO:0009785,GO:0009787,GO:0009788,GO:0009791,GO:0009845,GO:0009889,GO:0009908,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010162,GO:0010231,GO:0010244,GO:0010431,GO:0010517,GO:0010518,GO:0010646,GO:0010647,GO:0010648,GO:0010675,GO:0010863,GO:0010919,GO:0012505,GO:0014070,GO:0016020,GO:0016021,GO:0016053,GO:0017144,GO:0019220,GO:0019222,GO:0019438,GO:0019752,GO:0021700,GO:0022414,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030522,GO:0031090,GO:0031224,GO:0031226,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032960,GO:0033993,GO:0038023,GO:0042221,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043401,GO:0043436,GO:0044093,GO:0044214,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0048316,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060191,GO:0060193,GO:0061458,GO:0062012,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071215,GO:0071229,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071478,GO:0071482,GO:0071483,GO:0071495,GO:0071695,GO:0071704,GO:0071944,GO:0080090,GO:0089717,GO:0090351,GO:0090567,GO:0097305,GO:0097306,GO:0097437,GO:0098588,GO:0098805,GO:0104004,GO:1900274,GO:1901360,GO:1901362,GO:1901419,GO:1901420,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700,GO:1901701,GO:1902221,GO:1902223,GO:1902930,GO:1905957,GO:1905958
EggNOG free text desc.G-protein coupled receptor
EggNOG OGs28MT7@1,2QUBH@2759
Ec32 ortholog descriptionRelated to G-protein coupled receptors
Ec32 orthologEc-06_002590.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Exons1
Model size396
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.5354197-UTR-M-pyrifera_M_contig123512:124..1421622815753.5354197-UTR-M-pyrifera_M_contig123512:124..142Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123512 125..142 +
1692277553.360875-UTR-M-pyrifera_M_contig123512:124..1421692277553.360875-UTR-M-pyrifera_M_contig123512:124..142Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123512 125..142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.5462892-CDS-M-pyrifera_M_contig123512:142..5201622815753.5462892-CDS-M-pyrifera_M_contig123512:142..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123512 143..520 +
1692277553.3736727-CDS-M-pyrifera_M_contig123512:142..5201692277553.3736727-CDS-M-pyrifera_M_contig123512:142..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123512 143..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123512.4807.1prot_M-pyrifera_M_contig123512.4807.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123512 143..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123512.4807.1

>prot_M-pyrifera_M_contig123512.4807.1 ID=prot_M-pyrifera_M_contig123512.4807.1|Name=mRNA_M-pyrifera_M_contig123512.4807.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MAYCWLVPLVMACLPFSTNNYGDAGTWCSITAKDLKSLEWGTFWRFSVIY
APLWICVAINGYMCVKVYRAMRGLEAAMVAYADSLSDEEGEDGEEVGGGG
GGGGGGGEPPVTNPTAWGGGGGGGGG
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mRNA from alignment at M-pyrifera_M_contig123512:125..520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123512.4807.1 ID=mRNA_M-pyrifera_M_contig123512.4807.1|Name=mRNA_M-pyrifera_M_contig123512.4807.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig123512:125..520+ (Macrocystis pyrifera P11B4 male)
AAGCGCTTCCGCACGGTGATGGCCTACTGCTGGCTCGTCCCGCTCGTCAT
GGCCTGCCTCCCCTTCTCCACCAACAACTACGGCGACGCTGGCACCTGGT
GCTCAATCACCGCGAAGGACCTCAAGTCTCTCGAGTGGGGCACGTTCTGG
CGCTTCAGCGTCATCTACGCCCCCCTCTGGATCTGCGTCGCCATCAACGG
CTACATGTGCGTCAAGGTCTATCGCGCCATGAGAGGTTTGGAAGCGGCCA
TGGTGGCCTACGCTGACAGCCTCAGCGATGAGGAGGGGGAGGACGGGGAG
GAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGAGCCTCCCGT
GACAAATCCCACGGCCTGGGGGGGGGGGGGGGGGGGGGGGGGAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123512:125..520+

>mRNA_M-pyrifera_M_contig123512.4807.1 ID=mRNA_M-pyrifera_M_contig123512.4807.1|Name=mRNA_M-pyrifera_M_contig123512.4807.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig123512:125..520+ (Macrocystis pyrifera P11B4 male)
ATGGCCTACTGCTGGCTCGTCCCGCTCGTCATGGCCTGCCTCCCCTTCTC
CACCAACAACTACGGCGACGCTGGCACCTGGTGCTCAATCACCGCGAAGG
ACCTCAAGTCTCTCGAGTGGGGCACGTTCTGGCGCTTCAGCGTCATCTAC
GCCCCCCTCTGGATCTGCGTCGCCATCAACGGCTACATGTGCGTCAAGGT
CTATCGCGCCATGAGAGGTTTGGAAGCGGCCATGGTGGCCTACGCTGACA
GCCTCAGCGATGAGGAGGGGGAGGACGGGGAGGAGGTGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGCGGGGAGCCTCCCGTGACAAATCCCACGGCCTG
GGGGGGGGGGGGGGGGGGGGGGGGAGGGATGGCCTACTGCTGGCTCGTCC
CGCTCGTCATGGCCTGCCTCCCCTTCTCCACCAACAACTACGGCGACGCT
GGCACCTGGTGCTCAATCACCGCGAAGGACCTCAAGTCTCTCGAGTGGGG
CACGTTCTGGCGCTTCAGCGTCATCTACGCCCCCCTCTGGATCTGCGTCG
CCATCAACGGCTACATGTGCGTCAAGGTCTATCGCGCCATGAGAGGTTTG
GAAGCGGCCATGGTGGCCTACGCTGACAGCCTCAGCGATGAGGAGGGGGA
GGACGGGGAGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGG
AGCCTCCCGTGACAAATCCCACGGCCTGGGGGGGGGGGGGGGGGGGGGGG
GGAGGG
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