mRNA_M-pyrifera_M_contig123486.4806.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123486.4806.1
Unique NamemRNA_M-pyrifera_M_contig123486.4806.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: A0A2D9CDF0_9BACT (Peptidase_S9 domain-containing protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CDF0_9BACT)

HSP 1 Score: 134 bits (337), Expect = 3.000e-34
Identity = 76/168 (45.24%), Postives = 101/168 (60.12%), Query Frame = 1
Query:    1 EEGFQFKPEGPGSFVFVPRVDPSDEPSTKPEPDLAFKFVSARPIVQNFVVKSAKLNEETGLLEIEGDSSDEEE-HVRLERTWFTLRMPDESDRLMGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFTGYRQLNVEPGHEEIIGEIRAKVYTQRTEECA 501
            E GF+FK EGPGSFVFV  ++ +DEP   P PDLAFK+VSAR    +                  G + DE++ HV +ERTWFT + P      +GT+VL+PGMFGTPEP+V+  E Y+   G+AVLRM+SHPS FT +  +    GH++ + +  A    QR  ECA
Sbjct:  108 ESGFKFKVEGPGSFVFVEPLN-NDEPRRDP-PDLAFKYVSAREAAPD------------------GAAVDEDQDHVAIERTWFTFKNPRPDRETLGTIVLIPGMFGTPEPIVEACERYWHNKGYAVLRMLSHPSRFTQHLSMPYLDGHDDKVAKRIASSADQRIAECA 255          
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: A0A812Y1Q2_9DINO (Lgt protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Y1Q2_9DINO)

HSP 1 Score: 137 bits (344), Expect = 3.670e-34
Identity = 76/166 (45.78%), Postives = 98/166 (59.04%), Query Frame = 1
Query:   10 FQFKPEGPGSFVFV--PRVDPSDEPSTKPEPDLAFKFVSARPIVQNFVVKSAKLNEETGLLEIEGDSSDEEEHVRLERTWFTLRMPDESDRLMGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFTGYRQLNVEPGHEEIIGEIRAKVYTQRTEECA 501
            ++F+ EGPG F+FV  P  D   EP    EPDLAFKF++A+               E G++   GD   E + V LERTW T R        +GT+V++PGMFGTPEPV+DG+E YF   GWAVLRM+SHPS FT  +Q  VE G E  I +  A+++  RT E A
Sbjct: 1016 YKFQAEGPGCFIFVDNPPSDEGKEPDEDKEPDLAFKFITAQ---------------EAGMINAGGD---ELQQVLLERTWMTYRSAKGESETIGTVVMMPGMFGTPEPVIDGLERYFNSKGWAVLRMLSHPSRFTQRQQFAVEEGREAQIAKQVAEMFDTRTAEAA 1163          
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: A0A3M2CJL9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CJL9_9BACT)

HSP 1 Score: 120 bits (301), Expect = 1.740e-29
Identity = 68/170 (40.00%), Postives = 104/170 (61.18%), Query Frame = 1
Query:    1 EEGFQFKPEGPGSFVFVPRVDPSDEPSTKPEPDLAFK---FVSARPIVQNFVVKSAKLNEETGLLEIEGDSSDEEEHVRLERTWFTLRMPDESDRLMGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFTGYRQLNVEPGHEEIIGEIRAKVYTQRTEECA 501
            E+GF+F+ EGPGS VF+P +DP ++P+ +P+ D  F+   FVSAR                  L+E + D    E+H+ LERTW        +D   GT+V++PGM GTP+P+++G+  Y+ ++G+AV+R++SHPS FT   ++ V PG+E     + A +Y QRT ECA
Sbjct:   44 EDGFRFEAEGPGSLVFLPPLDPDEKPA-EPDGDDPFESVVFVSAR------------------LIERKND----EDHIALERTWIA-NYDALTDDPKGTIVMIPGMLGTPQPIIEGMIRYWRRAGYAVVRLLSHPSRFTERVEVPVTPGNETEAATLLASIYDQRTAECA 189          
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: A0A2A4RGD3_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RGD3_9BACT)

HSP 1 Score: 115 bits (289), Expect = 3.670e-27
Identity = 77/190 (40.53%), Postives = 103/190 (54.21%), Query Frame = 1
Query:    1 EEGFQFKPEGPGSFVFVPR--------VDPSDEPSTKPE---PDLAFKFVSARPI----VQNFVVKSAKLNEETGL-LEIEGDSSDE----EEHVRLERTWFTLRMPDESDRL---MGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFTGYRQLNVEPGHEEIIGEIRAKVYTQRTEECA 501
            E GF+FK E  GSF+FVP          DP  +  T  E   PDL+FKFVSA       V   VV++ K  E+    + I G    +    E+ V L+RTWFT R P   +     +G +VLLPGMFGTP+ +VDG+E Y+   G+ VLRM SHPS FT +  +NV  G+E+ +    A +  +R  E A
Sbjct:  112 ETGFKFKSEAGGSFLFVPNPENKVHLYADPIQDDGTLKESDIPDLSFKFVSATKYEPDKVSTMVVENQKTGEKKKYNVTIAGKKEPKFVSGEDFVELQRTWFTYRDPKGKEHKAEPVGMIVLLPGMFGTPDVIVDGLEKYWHHQGYGVLRMRSHPSRFTQHAMMNVVSGNEKSVARKAAAINDERVAEGA 301          
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: A0A5M4D1Z4_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D1Z4_9CYAN)

HSP 1 Score: 86.7 bits (213), Expect = 8.700e-17
Identity = 52/136 (38.24%), Postives = 67/136 (49.26%), Query Frame = 1
Query:    1 EEGFQFKPEGPGSFVFVPRVDPSDEPSTKPEPDLAFKFVSARPIVQNFVVKSAKLNEETGLLEIEGDSSDEEEHVRLERTWFTLRMPDESDRLMGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFT 408
            E G+Q+  EGPG+FVF           T   PD  F+FVS RP+ +   V                      E V +ERTWF      ++    G +V++PG+FG PEPV D      V+ GWAVLRM+SHPS FT
Sbjct:  102 ETGYQYVLEGPGAFVFRKADRSLKGRPTSSTPDAMFRFVSGRPMGKTNGV----------------------EVVMIERTWFAYYDAAKAGERRGLIVMVPGLFGVPEPVNDRFVELCVQDGWAVLRMLSHPSRFT 215          
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: UPI001AC0893D (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC0893D)

HSP 1 Score: 76.3 bits (186), Expect = 4.520e-13
Identity = 58/174 (33.33%), Postives = 81/174 (46.55%), Query Frame = 1
Query:    4 EGFQFKPEGPGSFVFVPRVDPSDEPSTKPEP---DLAFKFVSARPIVQNFVVKSAKLNEETGLLEIEGDSSDEEEHVRLERTWFTLRMPDESD---RLMGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFTGYRQLNVEPGHEEIIGEIR--AKVYTQRTEECA 501
            +G Q   EGPG+FV    + P      +      DL F+FVSA+              EE   L            +R+ERTWF    P+  +   R    ++L+PGMFGTPEPV  G+     K G  VLRM++HPS  T   +L ++P  + + GE +  A  +  R  ECA
Sbjct:  120 DGLQVLLEGPGAFVVGAELRPEGVKVPRRRQFNADLTFRFVSAQ--------------EEGPAL------------IRIERTWFAYFAPEGLEGNARPRAVVLLMPGMFGTPEPVASGLTISLRKRGMGVLRMIAHPSRLTERLELTLDPSGD-LEGEAKRAAAAFDSREAECA 266          
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: A0A3B1DND4_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DND4_9ZZZZ)

HSP 1 Score: 75.9 bits (185), Expect = 6.580e-13
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  223 VRLERTWFTLRMP---DESDRLMGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFT---GYRQLNVEPGHEEIIGEIRAKVYTQRTEECAKTV 510
            V+L+RTWF L  P   DE   + G ++LLPGMFGTPEPV+D +       GW VLRM++H S FT   GY  L+ E   E + G I A     R  ECA  V
Sbjct:  229 VQLQRTWFVLYAPRDTDEEAAVSGVVLLLPGMFGTPEPVIDSLVGMLRDRGWHVLRMLTHSSRFTEKAGYT-LDPEGDLEGVAGAI-ADELGDRAVECALAV 328          
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: A0A6M8VWL7_9BACT (Prolyl oligopeptidase family serine peptidase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A6M8VWL7_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 5.180e-12
Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  229 LERTWFTLRMPDE-------SDRLMGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFTGYRQLNVEPGHE-EIIGEIRAKVYTQRTEECAKTV 510
            LERT F L  P +       ++R  G +VLLPGMFGTPEPV+D V       GW VLRM++H S FT   +  V PG E E +    A V   R  ECA  V
Sbjct:  147 LERTAFVLYNPSDPAGEDSDAERPDGLVVLLPGMFGTPEPVIDSVVGQLRGRGWHVLRMLTHSSRFTQRAEFVVVPGGEVETVAAQVAGVLGDRAAECAFAV 248          
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Match: A0A7D8YK48_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8YK48_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 6.570e-9
Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = 1
Query:  214 EEHVRLERTWFTLRMPDESDRLMGTLVLLPGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFTGYRQLNVEPGHEEIIGEIRAKVYTQRTEECA 501
            E  +R+ERTW+ L  P   +   G ++L+PGMFGTPEPVV+ +       G+AV+R ++H + FT    ++++P       +  A+ + +R  E A
Sbjct:  200 ERFIRIERTWYQLVEPSTPEP-RGVVLLIPGMFGTPEPVVERLVRALSGRGYAVVRFLAHSARFTEKVTIDLDPSDLPAAADRIARTFGERAAENA 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123486.4806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2D9CDF0_9BACT3.000e-3445.24Peptidase_S9 domain-containing protein n=3 Tax=Phy... [more]
A0A812Y1Q2_9DINO3.670e-3445.78Lgt protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxI... [more]
A0A3M2CJL9_9BACT1.740e-2940.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A2A4RGD3_9BACT3.670e-2740.53Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A5M4D1Z4_9CYAN8.700e-1738.24Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
UPI001AC0893D4.520e-1333.33Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A3B1DND4_9ZZZZ6.580e-1346.08Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A6M8VWL7_9BACT5.180e-1245.10Prolyl oligopeptidase family serine peptidase n=1 ... [more]
A0A7D8YK48_9BACT6.570e-934.38Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123486contigM-pyrifera_M_contig123486:3..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.5040689-CDS-M-pyrifera_M_contig123486:2..5211622815753.5040689-CDS-M-pyrifera_M_contig123486:2..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123486 3..521 +
1692277553.3499238-CDS-M-pyrifera_M_contig123486:2..5211692277553.3499238-CDS-M-pyrifera_M_contig123486:2..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123486 3..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123486.4806.1prot_M-pyrifera_M_contig123486.4806.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123486 3..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123486.4806.1

>prot_M-pyrifera_M_contig123486.4806.1 ID=prot_M-pyrifera_M_contig123486.4806.1|Name=mRNA_M-pyrifera_M_contig123486.4806.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
EEGFQFKPEGPGSFVFVPRVDPSDEPSTKPEPDLAFKFVSARPIVQNFVV
KSAKLNEETGLLEIEGDSSDEEEHVRLERTWFTLRMPDESDRLMGTLVLL
PGMFGTPEPVVDGVESYFVKSGWAVLRMMSHPSDFTGYRQLNVEPGHEEI
IGEIRAKVYTQRTEECAKTVATG
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mRNA from alignment at M-pyrifera_M_contig123486:3..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123486.4806.1 ID=mRNA_M-pyrifera_M_contig123486.4806.1|Name=mRNA_M-pyrifera_M_contig123486.4806.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig123486:3..521+ (Macrocystis pyrifera P11B4 male)
GAGGAGGGATTCCAGTTCAAGCCGGAGGGTCCCGGGAGTTTCGTGTTTGT CCCTCGTGTAGATCCATCTGATGAGCCGTCGACGAAGCCGGAGCCGGATC TTGCGTTCAAGTTTGTGTCTGCGCGCCCGATCGTCCAGAACTTCGTCGTC AAGTCTGCGAAACTGAACGAAGAAACAGGGCTTCTGGAAATCGAAGGGGA TTCCAGCGACGAAGAGGAGCATGTGCGCCTCGAACGCACATGGTTCACGC TTCGCATGCCCGATGAGTCTGATCGCTTGATGGGAACGCTCGTGCTGCTC CCAGGGATGTTTGGGACTCCTGAGCCTGTCGTTGACGGCGTGGAGTCCTA CTTCGTCAAGAGCGGCTGGGCCGTGCTCCGCATGATGTCACATCCCTCTG ATTTCACAGGATATCGACAGCTCAATGTCGAGCCTGGACATGAAGAAATC ATCGGGGAAATAAGGGCGAAAGTCTACACCCAGCGAACAGAGGAATGTGC TAAGACCGTCGCCACCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123486:3..521+

>mRNA_M-pyrifera_M_contig123486.4806.1 ID=mRNA_M-pyrifera_M_contig123486.4806.1|Name=mRNA_M-pyrifera_M_contig123486.4806.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig123486:3..521+ (Macrocystis pyrifera P11B4 male)
GAGGAGGGATTCCAGTTCAAGCCGGAGGGTCCCGGGAGTTTCGTGTTTGT
CCCTCGTGTAGATCCATCTGATGAGCCGTCGACGAAGCCGGAGCCGGATC
TTGCGTTCAAGTTTGTGTCTGCGCGCCCGATCGTCCAGAACTTCGTCGTC
AAGTCTGCGAAACTGAACGAAGAAACAGGGCTTCTGGAAATCGAAGGGGA
TTCCAGCGACGAAGAGGAGCATGTGCGCCTCGAACGCACATGGTTCACGC
TTCGCATGCCCGATGAGTCTGATCGCTTGATGGGAACGCTCGTGCTGCTC
CCAGGGATGTTTGGGACTCCTGAGCCTGTCGTTGACGGCGTGGAGTCCTA
CTTCGTCAAGAGCGGCTGGGCCGTGCTCCGCATGATGTCACATCCCTCTG
ATTTCACAGGATATCGACAGCTCAATGTCGAGCCTGGACATGAAGAAATC
ATCGGGGAAATAAGGGCGAAAGTCTACACCCAGCGAACAGAGGAATGTGC
TAAGACCGTCGCCACCGGGGAGGAGGGATTCCAGTTCAAGCCGGAGGGTC
CCGGGAGTTTCGTGTTTGTCCCTCGTGTAGATCCATCTGATGAGCCGTCG
ACGAAGCCGGAGCCGGATCTTGCGTTCAAGTTTGTGTCTGCGCGCCCGAT
CGTCCAGAACTTCGTCGTCAAGTCTGCGAAACTGAACGAAGAAACAGGGC
TTCTGGAAATCGAAGGGGATTCCAGCGACGAAGAGGAGCATGTGCGCCTC
GAACGCACATGGTTCACGCTTCGCATGCCCGATGAGTCTGATCGCTTGAT
GGGAACGCTCGTGCTGCTCCCAGGGATGTTTGGGACTCCTGAGCCTGTCG
TTGACGGCGTGGAGTCCTACTTCGTCAAGAGCGGCTGGGCCGTGCTCCGC
ATGATGTCACATCCCTCTGATTTCACAGGATATCGACAGCTCAATGTCGA
GCCTGGACATGAAGAAATCATCGGGGAAATAAGGGCGAAAGTCTACACCC
AGCGAACAGAGGAATGTGCTAAGACCGTCGCCACCGGG
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