mRNA_M-pyrifera_M_contig12348.4805.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12348.4805.1
Unique NamemRNA_M-pyrifera_M_contig12348.4805.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Match: A0A6H5JEA8_9PHAE (PWWP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA8_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 5.460e-60
Identity = 98/122 (80.33%), Postives = 109/122 (89.34%), Query Frame = 1 
Query:   13 NQALHVRCSSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEEAGDRLVVFMNENEQFRVNHRFCKPFVGTSQDD-IMRRVSRGNKRMAKAIKMGMKGLRVAHELLGTEGDPNAPLNRPSFD 375
            NQALHVRCSSTSEIVWARLHGFPWWPALVVKP+G GFQRSL EAGDRLVVFMNE + FRVNHRFCKP+VGT++ D +MRR SR N+RMA+AIKM  KGLRVAHE  G++GDPNAP NRP+FD
Sbjct:  798 NQALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEAGDRLVVFMNEQQHFRVNHRFCKPYVGTTKHDGVMRRASRNNRRMARAIKMATKGLRVAHERFGSDGDPNAPHNRPNFD 919
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BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Match: D8LRK0_ECTSI (Nucleosome/chromatin assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.750e-24
Identity = 60/125 (48.00%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:    1 DLATNQALHVRCSSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEEAGDRLVVFMNENEQFRVNHRFCKPFVGTSQDDIMRRVSRGNKRMAKAIKMGMKGLRVAHELLGTEGDPNAPLNRPSFD 375
            DLATNQAL VRCSSTSEIVWARLHGFPWWPALVVKP+G GFQ                                                      M  KGLRVAHE  G++GDPNAP NRP+FD
Sbjct: 1507 DLATNQALRVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQ------------------------------------------------------MATKGLRVAHERFGSDGDPNAPHNRPNFD 1577
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BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Match: A0A7S2BI97_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI97_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.330e-11
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:    7 ATNQALHVRCSSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEEAGDRLVVFMNENEQFRVNHRFCKPFVGTSQDDIMRRVSRGNKRMAKAIKMGMKGLRV--AHE 321
            A + ++ V    TSE+VWAR+ G+PWWP+ V +P    F +++ E  + LVVF+ E  Q+ +      PF G  QD  M +  R    + +++++ +   R+  AHE
Sbjct:   29 AIDPSVRVSSEPTSEMVWARVKGYPWWPSRVHRPRDPKFSQAMSERNEILVVFVGEAAQYHLPLEDTAPFTGDEQDSHMPKKDR---HIQRSLRLAIHTTRMIQAHE 132
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BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Match: A0A7S3JYV4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYV4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.650e-11
Identity = 40/125 (32.00%), Postives = 60/125 (48.00%), Query Frame = 1 
Query:   55 VWARLHGFPWWPALVVKPDGAGFQRSLEEAGDRLVVFMNENEQFRVNHRFCKPFVGTSQDDIMRRVSRGNKRMAKAIKMGMKGLRVAHELL--------------------GTEGDPNAPLNRPS 369
            VWAR+ G+PWWPA    P    F ++LE    +L+VF+NE+  + ++    +PF G   D           RM K+IK   KGL++A  ++                    GTE + N PLN+P+
Sbjct: 1098 VWARIRGYPWWPAREYIPKSPHFAQALERRNHKLLVFVNESVMYLIDSNSVEPFTGLPDDP----------RMPKSIKQCAKGLQLALTIVKAVQQKEDLPTANGESSTPQGTEQNANTPLNQPT 1212
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BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Match: A0A7S3ZNS7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.330e-8
Identity = 29/101 (28.71%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:   19 ALHVRCSSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEEAGDRLVVFMNENEQFRVNHRFCKPFVGTSQDDIMRRVSRGNKRMAKAIKMGMKGLRVAHE 321
            A+++    T E+VWAR+ G+PWWPA   +P    F+ +L+  G  L+VF+ E+ Q+ +       F G   D  + +  +   ++A+AI+     + V ++
Sbjct:  746 AVYIPSKPTGELVWARIRGYPWWPARRHEPTRQDFKEALQARGRSLIVFVGESVQYFMPSSGLAEFSGVEGDVHLPKPGKATPQLAEAIRHARTSVGVYYD 846
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BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Match: A0A8J2X491_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X491_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.420e-8
Identity = 29/101 (28.71%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:   19 ALHVRCSSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEEAGDRLVVFMNENEQFRVNHRFCKPFVGTSQDDIMRRVSRGNKRMAKAIKMGMKGLRVAHE 321
            A+++    T E+VWAR+ G+PWWPA   +P    F+ +L+  G  L+VF+ E+ Q+ +       F G   D  + +  +   ++A+AI+     + V ++
Sbjct: 1284 AVYIPSKPTGELVWARIRGYPWWPARRHEPTRQDFKEALQARGRSLIVFVGESVQYFMPSSGLAEFSGVEGDVHLPKPGKATPQLAEAIRHARTSVGVYYD 1384
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BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Match: A0A7S2CLH6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLH6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.160e-7
Identity = 30/102 (29.41%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:   19 ALHVRCSSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEEAGDRLVVFMNENEQFRVNHRFCKPFVGTSQDDIMRRVSRG---NKRMAKAIKMGMKGLRVA 315
            A+ +    T  ++WAR+ GFPWWPA +       F+R L+E  + L+VF+ E  ++ +      PF+G  +D  M +  +     K +  AI   +  +R A
Sbjct:  146 AVMIPSIGTQTMLWARVSGFPWWPARLHTALNPEFERVLKERSEVLIVFVGEAHKYHLPETSVAPFLGNDEDPHMPKQGKSPVTKKELQMAINTALSIIRTA 247
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BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Match: A0A0V0R2M5_PSEPJ (PWWP domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R2M5_PSEPJ)

HSP 1 Score: 51.2 bits (121), Expect = 9.770e-5
Identity = 26/84 (30.95%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:   49 EIVWARLHGFPWWPALVVKPDGAGFQRSLEEAGDRLVVFMNENEQFRVNHRFCKPFVGTSQDDIMRRVSRGNKRMAKAIKMGMK 300
            ++VWA++ G+PWWPA+V +   +  Q+++      LV F+N+N    +   F   F+   +       S+ NK++ +AIKMG +
Sbjct:   11 QVVWAKVKGYPWWPAVVAQISSS--QQNI------LVNFLNDNSHCNLQKNFILDFMDNLEQFQKHVQSQKNKQLVEAIKMGKR 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12348.4805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JEA8_9PHAE5.460e-6080.33PWWP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRK0_ECTSI1.750e-2448.00Nucleosome/chromatin assembly factor group n=1 Tax... [more]
A0A7S2BI97_9STRA2.330e-1132.71Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3JYV4_9STRA2.650e-1132.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZNS7_9STRA2.330e-828.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2X491_9STRA2.420e-828.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2CLH6_9STRA2.160e-729.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0V0R2M5_PSEPJ9.770e-530.95PWWP domain-containing protein n=1 Tax=Pseudocohni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12348contigM-pyrifera_M_contig12348:5930..8376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size414
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12348.4805.1prot_M-pyrifera_M_contig12348.4805.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12348 5930..8376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.4405994-CDS-M-pyrifera_M_contig12348:5929..60551622815753.4405994-CDS-M-pyrifera_M_contig12348:5929..6055Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12348 5930..6055 -
1692277553.3151402-CDS-M-pyrifera_M_contig12348:5929..60551692277553.3151402-CDS-M-pyrifera_M_contig12348:5929..6055Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12348 5930..6055 -
1622815753.4510708-CDS-M-pyrifera_M_contig12348:7460..76221622815753.4510708-CDS-M-pyrifera_M_contig12348:7460..7622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12348 7461..7622 -
1692277553.3254628-CDS-M-pyrifera_M_contig12348:7460..76221692277553.3254628-CDS-M-pyrifera_M_contig12348:7460..7622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12348 7461..7622 -
1622815753.462882-CDS-M-pyrifera_M_contig12348:8250..83761622815753.462882-CDS-M-pyrifera_M_contig12348:8250..8376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12348 8251..8376 -
1692277553.337295-CDS-M-pyrifera_M_contig12348:8250..83761692277553.337295-CDS-M-pyrifera_M_contig12348:8250..8376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12348 8251..8376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12348.4805.1

>prot_M-pyrifera_M_contig12348.4805.1 ID=prot_M-pyrifera_M_contig12348.4805.1|Name=mRNA_M-pyrifera_M_contig12348.4805.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
DLATNQALHVRCSSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEEAGD
RLVVFMNENEQFRVNHRFCKPFVGTSQDDIMRRVSRGNKRMAKAIKMGMK
GLRVAHELLGTEGDPNAPLNRPSFDAPEAPEEEAALPA
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mRNA from alignment at M-pyrifera_M_contig12348:5930..8376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12348.4805.1 ID=mRNA_M-pyrifera_M_contig12348.4805.1|Name=mRNA_M-pyrifera_M_contig12348.4805.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2447bp|location=Sequence derived from alignment at M-pyrifera_M_contig12348:5930..8376- (Macrocystis pyrifera P11B4 male)
GATCTCGCCACGAACCAAGCGCTGCATGTGCGCTGCTCTTCCACCTCGGA
GATCGTGTGGGCGCGGCTCCACGGCTTCCCTTGGTGGCCGGCGCTGGTCG
TCAAGCCGGACGGCGCCGGGTTTCAGGTGTGTTGGAGCGGGGAGGGGGTT
GGGGGGGGCGGAGGCTGGGGGTGGGGGCAAATGGCGTTCTTTGTCTTTGG
CGTTGTTGTCGGTGGTGGTGGTGGTGTTGGTAGTGATATTGTTGCTGTTG
TTGTCGTTGGTGCGCTGCGAAGACAGTGCGGCACTCTTGCTGCACAAACG
AGCGAACAATGACAGTTTTCGTCGTGAAGCTCGGGCACCAAAATATGGCG
TCTATCCCCTTTTTTCCTTGCTCTCACGGCGCACCGCACCGCACCGCACC
GCACCGCCCTGCTGCTAGCCTTAACACTATCTCTCCGTTTCCTATCATTC
ATGTCGTTCTTGCCTCGTTTTTTTTTTTTTCTGCTGGCAAACTTGCTTGC
TCGTGCACTTTTGTTTGTTTGTGTGTGTTGATTTATGTTGTGTTGTGTTG
TGTTGTGTTGTGCTGTGTTAAGTTATGGCTGGCGTATGCTGCCTTCTTCT
GTTTAGCGTTGATTGTGTACTTCATTTAATTTTTTGTGTCCTCCGGCGAA
ATGTTATTGATGAAGCTTGAGCTCACCACACTTGCACATACACAATTCGT
GTCTTGTGTCAAATGTTTTTGTTTTTTTTCTTAAAACTCGGTCACACTCG
CCAGCGGAGCCTCGAGGAGGCCGGCGACCGACTGGTGGTGTTCATGAACG
AGAACGAGCAATTCAGGGTGAACCACCGCTTCTGCAAACCGTTCGTCGGC
ACGAGCCAAGACGACATCATGCGGCGCGTCAGCCGCGGCAACAAGAGGAT
GGCCAAAGCTATCAAGGTGAGCTACCGCAGGAGACGAAGGCGAGGCAAAG
CGCTAGGCACAGCAACGCGCCGTCGTCGTTCGCTCGTGTTTGCGAGACAT
GTCTTTCCTCTGGGAGGTGTTCCTGGGAGGATTCCGGCGGTGCACTGGGA
CATGGGACATGGGGACGGGCGGGGGCAGGGTTTTGGTTGTGGTTGTCGTG
GGGTTGGCGCCTTCTTTTCTGAGCTCCTCGCGCTAAGAGCTCAACATCTT
ACCTGAGTGACAAGACTCCGAAGGAATTTGCTCGGGCAGCCCGACCAGCG
TGTATTTGTTCCTACTGCTGTAGACCTAAGTATATTTACTACAGTAGAAC
TAACATAACACTAACCGGTATACTAGTAGTTGCTCGCTTCGGGAGCTCAA
CCGGTCAGAAACTATTTTGCCTCAGAAGGCAAAAAAAAAGTGCAACCCCG
ACAACCGTGCGATGAGTCGGTGGTAGTTCTGCTGGTGGTGATGTTGGTGT
TGTGGTTGCCGTTGACATCATCGGTGTCGTTTTTGTGTTGTCGGCGGAAT
TATTGCGCCGTCGAGACGACGGTCTCTCTCACGGCCACTTGCAGGCGAGC
CTGCCTACCTTCCGTCATTGGTACAGCGGCAGAGGGAAAGCGCGGTTGAT
ACTATTCCCCCCCCCCGGCCCGACCCGCCTATCCCAAAACACCGCGCTTC
TATCAATACCGCAGCTGGCAGAAGATGTTGTGTCTGCATTGTTTTGTCAC
AAAACAAGTCCCTTTCTACATCGCGAAACGTGAGTAGAACAGGTGCGATT
CGCAACGTGGGACCGGTTTCAGGTTTCGGTGAGCGCTGCCTACCGCCTCT
GTCGGAATTCCACGCAGAAAATTGACTCTCACCAGGAGGCAAAGCCAAAC
GCTGAAAGCTTCTCTTGAAAAAAAACGTCAGAATTCCCCTCAGTTGAGCA
GGGGGGGCGCGGTTCGAAACGACGCACCGCCCGTAACGGTCGAGGCTGTT
TTTTTATTCGGAAGAACCGCGGCGCCGACAGCGACCCGAACATATCTCCC
TACCCCCCCCCCAAAAGAAAACACAATATACCTGGTATGTACTAACGGAA
AAAAAAGGAGCGAGCGCGCAAATGTTGGAAGTGTCTGTATCATGAGTAGG
AACTGTGCTCCGTCTCAAAAGGGATGCGAGGTCAATGGTCAAATAACTTG
GGCAAGCAACAAATGAGTACCCCCGCCCCCGCCCACTCACACGGCCATGC
ATGGCACGCATACCCCCCCCCTCCCATCCGCATCCTTGCGCTCGTTGCGC
CCCCTCCATTGCTGCGATCGATGACAGCATGACCCCCCCCCCCTCCCTCC
CCTTTCTTTTGCGTCTCCCCGTCTCCCCCCCCCTCCACCTCCCCCCCATC
ATGATTTTTTCGGCCGATCAGATGGGCATGAAGGGCCTGCGGGTGGCGCA
CGAGCTCCTGGGTACCGAGGGCGACCCCAACGCGCCCCTCAATCGTCCGA
GTTTCGACGCACCGGAGGCGCCCGAAGAGGAGGCTGCGCTGCCGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12348:5930..8376-

>mRNA_M-pyrifera_M_contig12348.4805.1 ID=mRNA_M-pyrifera_M_contig12348.4805.1|Name=mRNA_M-pyrifera_M_contig12348.4805.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig12348:5930..8376- (Macrocystis pyrifera P11B4 male)
GATCTCGCCACGAACCAAGCGCTGCATGTGCGCTGCTCTTCCACCTCGGA
GATCGTGTGGGCGCGGCTCCACGGCTTCCCTTGGTGGCCGGCGCTGGTCG
TCAAGCCGGACGGCGCCGGGTTTCAGGATCTCGCCACGAACCAAGCGCTG
CATGTGCGCTGCTCTTCCACCTCGGAGATCGTGTGGGCGCGGCTCCACGG
CTTCCCTTGGTGGCCGGCGCTGGTCGTCAAGCCGGACGGCGCCGGGTTTC
AGCGGAGCCTCGAGGAGGCCGGCGACCGACTGGTGGTGTTCATGAACGAG
AACGAGCAATTCAGGGTGAACCACCGCTTCTGCAAACCGTTCGTCGGCAC
GAGCCAAGACGACATCATGCGGCGCGTCAGCCGCGGCAACAAGAGGATGG
CCAAAGCTATCAAGCGGAGCCTCGAGGAGGCCGGCGACCGACTGGTGGTG
TTCATGAACGAGAACGAGCAATTCAGGGTGAACCACCGCTTCTGCAAACC
GTTCGTCGGCACGAGCCAAGACGACATCATGCGGCGCGTCAGCCGCGGCA
ACAAGAGGATGGCCAAAGCTATCAAGATGGGCATGAAGGGCCTGCGGGTG
GCGCACGAGCTCCTGGGTACCGAGGGCGACCCCAACGCGCCCCTCAATCG
TCCGAGTTTCGACGCACCGGAGGCGCCCGAAGAGGAGGCTGCGCTGCCGG
CCATGGGCATGAAGGGCCTGCGGGTGGCGCACGAGCTCCTGGGTACCGAG
GGCGACCCCAACGCGCCCCTCAATCGTCCGAGTTTCGACGCACCGGAGGC
GCCCGAAGAGGAGGCTGCGCTGCCGGCC
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