mRNA_M-pyrifera_M_contig123457.4803.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123457.4803.1
Unique NamemRNA_M-pyrifera_M_contig123457.4803.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A7C7VFZ0_9PLAN (Alginate lyase family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7VFZ0_9PLAN)

HSP 1 Score: 150 bits (378), Expect = 1.280e-39
Identity = 69/144 (47.92%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLESPQTACLQI--GERTLHVQSLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMPGYIG 426
            CD+WSRFR+GYRG P+ LEHG+   F W RA HDAYRR+ VP VGR LAC    PWLCVD+A G G HELT+ LH  PD  V LE   + C+++  G++T  +  L   E  + + WYCP FG R    V++     ++P   G
Sbjct:  459 CDLWSRFRMGYRGRPTRLEHGRQATFHWVRAEHDAYRRVRVPAVGRLLACRPGGPWLCVDYAHGRGQHELTSWLHFHPD--VRLEPLNSHCIRVVLGKQTFRLDLLRPGELTVGQAWYCPQFGRRIPAPVVRWHGLRRLPACCG 600          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A7V3NC85_9BACT (Alginate lyase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3NC85_9BACT)

HSP 1 Score: 148 bits (374), Expect = 6.930e-39
Identity = 66/142 (46.48%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLESPQTACLQIGERTLHVQSLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMPGYIG 426
            CDMWSRFR+GYRG P PL+ GQTG F W  A H+AYRR+ VP VGR +AC    PW C+DWAEG G H L +RLHL PD+       +   L      LH++ L      I+ GWYCP  G+R  ++V+   A   +P  + 
Sbjct:  481 CDMWSRFRMGYRGWPGPLQTGQTGDFHWAWAWHNAYRRLRVPRVGRLVACRPGGPWFCLDWAEGRGTHRLVSRLHLHPDVRARQVDARAVELDSAAGLLHLEFLGPGTLTIQTGWYCPQLGLRLPSAVVCWQAEVPLPAAVA 622          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A7V4M6C3_9BACT (Alginate lyase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4M6C3_9BACT)

HSP 1 Score: 144 bits (364), Expect = 2.070e-37
Identity = 66/142 (46.48%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLESPQTACLQIGERTLHVQSLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMPGYIG 426
            CDMWSRFR+G+RG P PLE G    F W  ATHDAYRR+GVP VGR+LAC    PW CVDWAEG   H LT RLHL P +     S     L+ G  +L ++ LT     ++   +CP+FGVR +  V++      +P  + 
Sbjct:  559 CDMWSRFRMGHRGWPGPLETGCDDGFFWAWATHDAYRRLGVPRVGRFLACRSGGPWFCVDWAEGKRTHRLTHRLHLDPSVQTAFLSDVAIELRAGGASLRLEFLTPGRLSVDLACHCPEFGVRIQAPVIRWDIESPLPAAVA 700          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A5C6B638_9PLAN (Heparin-sulfate lyase n=1 Tax=Symmachiella macrocystis TaxID=2527985 RepID=A0A5C6B638_9PLAN)

HSP 1 Score: 131 bits (329), Expect = 9.490e-33
Identity = 59/142 (41.55%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLESPQTACLQIGERTLHVQSLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMPGYIG 426
            CDMWS+FR+GYRG P  L  G      W  A+H+AYRR+GVP + RW+ C +   W  VD A GT  H LT RLHL  D++   ES  T  L +      + SLT     I +GW+CP+FG R    V++ +    +P   G
Sbjct:  479 CDMWSKFRMGYRGWPGHLTSGTRDGIDWAHASHNAYRRLGVPRIDRWVICRQAGGWFVVDQAHGTKRHTLTNRLHLHADVIAVQESESTVRLIVNSDEYILASLTPGNLRITEGWFCPEFGKRIPAPVVEWSTNAALPAVSG 620          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A3L7PFB2_9BACT (Hepar_II_III_N domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7PFB2_9BACT)

HSP 1 Score: 122 bits (307), Expect = 7.030e-30
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDM-VVTLESPQTACLQIGERTLHVQSLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMPGYI 423
            CD+W +FR+GYRGH   ++ G    + WC A+HDAYRR+GVPVV R   C +   W C+D   G+G H L +RLHL P++ VVTLESP    L  G++                G YCP+FG     +VL+ T   ++P  +
Sbjct:  427 CDVWGKFRMGYRGHTQIIDEGHQDSYWWCHASHDAYRRLGVPVVARHFECREDGIWSCMDVLWGSGEHVLVSRLHLHPNVAVVTLESPWVELLVGGQKVRITFGGAEGILTTRPGQYCPEFGQVIPNTVLEWTRHTKVPAVV 568          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A2S8FCA5_9BACT (Hepar_II_III_N domain-containing protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8FCA5_9BACT)

HSP 1 Score: 122 bits (305), Expect = 1.750e-29
Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLESPQTACLQIGERTLHVQSLTTAEFVIEKGWYCPDFGVR 369
            CD WS+FR+G RG  SPL+ G    F W  ATHDAYR + VP +GR +AC    PW+ +DWA+ +G H    RLHLAP++ +  +      LQ+   TL +  L   E      WYCP+FG R
Sbjct:  473 CDAWSKFRMGRRGKTSPLKSGVEHEFHWAAATHDAYRHLAVPELGRLVACRHGGPWIVLDWAKTSGEHSYVNRLHLAPEVRLGAQDNNGIDLQLPNMTLKLSLLGKGELSTSATWYCPEFGKR 595          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A2S8G0V2_9BACT (Hepar_II_III_N domain-containing protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8G0V2_9BACT)

HSP 1 Score: 121 bits (304), Expect = 2.480e-29
Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLESPQTACLQIGERTLHVQSLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMPGYIG 426
            CD+WSRFR+G RG  S L+ G T  F W  ATH+AYR +GVP VGR LAC    PW+ +DWA+G G H    RLHL P++       +   LQ+   +  +  L   +  +   WYCP+FG R    +++      +P   G
Sbjct:  488 CDVWSRFRMGRRGKTSSLKTGTTHGFHWGAATHNAYRHLGVPEVGRLLACRPDGPWIILDWAKGRGSHTCMNRLHLGPEVTTGAVEGKQIELQLPGESASLSLLGMGQLSLAASWYCPEFGNRIARPMVEACYEGNLPYVAG 629          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A5C6AKD5_9BACT (Heparinase II/III-like protein n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6AKD5_9BACT)

HSP 1 Score: 110 bits (274), Expect = 2.720e-25
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLE-SPQTACLQIGERTLHVQSLTTAE-FVIEKGWYCPDFGVRQETSVLKLTATCQMPGYIG 426
            CD+WSRFR+G RGH +    G+    +WC ATHDAYR +GV  VGR L       W  VDW    G H+L +RLH+ P     L  + + A L  G+  + ++SL  ++ +    GWYCP+FGVR    VL+L+ +     ++G
Sbjct:  431 CDLWSRFRMGRRGHITWRASGREDSLSWCVATHDAYRHLGVREVGR-LVLADGCSWTVVDWIRSRGQHQLVSRLHVHPSWRCELSGASEVAELIYGQDIVRLRSLRESDRWGKGTGWYCPEFGVRHPNDVLQLSQSSSGFAWLG 573          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A142WPN5_9PLAN (Heparin-sulfate lyase n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WPN5_9PLAN)

HSP 1 Score: 110 bits (274), Expect = 2.790e-25
Identity = 54/138 (39.13%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLESPQTACLQIGERTLHVQSLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMP 414
            CD+WS+FR+G RG P     G+T  ++WC A+H+AYRR GVP  GRW+A      W+ V+   G G    T R HL PD+  T ESP    L +  ++L +      E   E+  YCP+FG R + +VL      ++P
Sbjct:  448 CDLWSKFRMGRRGKPVRRASGRTEEWSWCFASHNAYRRAGVPETGRWMAARGGGFWVAVESLGGAGPRTATLRWHLHPDVTATRESPTEWRLAVAGQSLVLALPAEGETRQERYPYCPEFGCRIDAAVLVWQTRRELP 585          
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Match: A0A3M1RFV9_9BACT (Hepar_II_III_N domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1RFV9_9BACT)

HSP 1 Score: 105 bits (261), Expect = 1.090e-23
Identity = 50/144 (34.72%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 CDMWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHKQRPWLCVDW--AEGTGLHELTTRLHLAPDMVVTLESPQTACLQIGERTLHVQSLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMPGYIG 426
            CD++SRFR+G RGHP+ L HG+ G   W   +HDAYR +G+P V R++ C    PW+ +D       G H L +RLH  PD+ +T  +        G+R++ V  +      + +  Y P+FGVR     + L  T      +G
Sbjct:  325 CDVYSRFRMGRRGHPTRLAHGRHGDLYWATCSHDAYRFLGIPSVRRYVVCRPGGPWVILDRLNTRTRGTHRLCSRLHAHPDIELTAVAADRITFAAGDRSVVVTPVGHNRLELTESTYHPEFGVRMPRPCITLRTTSPPATIVG 468          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123457.4803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7C7VFZ0_9PLAN1.280e-3947.92Alginate lyase family protein n=1 Tax=Planctomycet... [more]
A0A7V3NC85_9BACT6.930e-3946.48Alginate lyase family protein n=1 Tax=Planctomycet... [more]
A0A7V4M6C3_9BACT2.070e-3746.48Alginate lyase family protein n=1 Tax=Planctomycet... [more]
A0A5C6B638_9PLAN9.490e-3341.55Heparin-sulfate lyase n=1 Tax=Symmachiella macrocy... [more]
A0A3L7PFB2_9BACT7.030e-3040.85Hepar_II_III_N domain-containing protein n=1 Tax=P... [more]
A0A2S8FCA5_9BACT1.750e-2943.90Hepar_II_III_N domain-containing protein n=2 Tax=P... [more]
A0A2S8G0V2_9BACT2.480e-2939.44Hepar_II_III_N domain-containing protein n=1 Tax=B... [more]
A0A5C6AKD5_9BACT2.720e-2539.58Heparinase II/III-like protein n=1 Tax=Stieleria v... [more]
A0A142WPN5_9PLAN2.790e-2539.13Heparin-sulfate lyase n=1 Tax=Planctomyces sp. SH-... [more]
A0A3M1RFV9_9BACT1.090e-2334.72Hepar_II_III_N domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123457contigM-pyrifera_M_contig123457:2..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog269799.Gmet_1501
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Heparinase II/III N-terminus
EggNOG OGs1MUJ4@1224,2WJCY@28221,43BAK@68525,COG5360@1,COG5360@2
COG Functional cat.S
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size423
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.2881806-UTR-M-pyrifera_M_contig123457:1..71622815753.2881806-UTR-M-pyrifera_M_contig123457:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123457 2..7 +
1692277553.2509634-UTR-M-pyrifera_M_contig123457:1..71692277553.2509634-UTR-M-pyrifera_M_contig123457:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123457 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.3008041-CDS-M-pyrifera_M_contig123457:7..4301622815753.3008041-CDS-M-pyrifera_M_contig123457:7..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123457 8..430 +
1692277553.2665486-CDS-M-pyrifera_M_contig123457:7..4301692277553.2665486-CDS-M-pyrifera_M_contig123457:7..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123457 8..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123457.4803.1prot_M-pyrifera_M_contig123457.4803.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123457 8..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123457.4803.1

>prot_M-pyrifera_M_contig123457.4803.1 ID=prot_M-pyrifera_M_contig123457.4803.1|Name=mRNA_M-pyrifera_M_contig123457.4803.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MWSRFRLGYRGHPSPLEHGQTGPFAWCRATHDAYRRIGVPVVGRWLACHK
QRPWLCVDWAEGTGLHELTTRLHLAPDMVVTLESPQTACLQIGERTLHVQ
SLTTAEFVIEKGWYCPDFGVRQETSVLKLTATCQMPGYIG*
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mRNA from alignment at M-pyrifera_M_contig123457:2..430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123457.4803.1 ID=mRNA_M-pyrifera_M_contig123457.4803.1|Name=mRNA_M-pyrifera_M_contig123457.4803.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig123457:2..430+ (Macrocystis pyrifera P11B4 male)
TGCGACATGTGGTCACGATTTCGTCTGGGGTATCGTGGTCACCCGTCTCC ATTGGAACACGGGCAGACAGGTCCGTTCGCGTGGTGCCGGGCGACTCACG ATGCGTATCGACGAATCGGAGTGCCGGTTGTCGGTCGTTGGCTGGCGTGC CACAAACAGAGGCCGTGGCTGTGTGTCGACTGGGCCGAAGGAACCGGTTT GCACGAGTTGACGACGAGGCTTCACCTGGCACCCGATATGGTCGTCACAC TGGAATCGCCGCAGACTGCTTGTTTGCAAATCGGAGAGCGGACCTTGCAT GTGCAGTCGCTGACGACAGCCGAGTTCGTCATCGAGAAGGGATGGTACTG TCCGGATTTTGGTGTGCGTCAGGAGACGTCTGTCCTGAAACTGACTGCGA CCTGTCAAATGCCCGGTTACATTGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123457:2..430+

>mRNA_M-pyrifera_M_contig123457.4803.1 ID=mRNA_M-pyrifera_M_contig123457.4803.1|Name=mRNA_M-pyrifera_M_contig123457.4803.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig123457:2..430+ (Macrocystis pyrifera P11B4 male)
ATGTGGTCACGATTTCGTCTGGGGTATCGTGGTCACCCGTCTCCATTGGA
ACACGGGCAGACAGGTCCGTTCGCGTGGTGCCGGGCGACTCACGATGCGT
ATCGACGAATCGGAGTGCCGGTTGTCGGTCGTTGGCTGGCGTGCCACAAA
CAGAGGCCGTGGCTGTGTGTCGACTGGGCCGAAGGAACCGGTTTGCACGA
GTTGACGACGAGGCTTCACCTGGCACCCGATATGGTCGTCACACTGGAAT
CGCCGCAGACTGCTTGTTTGCAAATCGGAGAGCGGACCTTGCATGTGCAG
TCGCTGACGACAGCCGAGTTCGTCATCGAGAAGGGATGGTACTGTCCGGA
TTTTGGTGTGCGTCAGGAGACGTCTGTCCTGAAACTGACTGCGACCTGTC
AAATGCCCGGTTACATTGGCTGAATGTGGTCACGATTTCGTCTGGGGTAT
CGTGGTCACCCGTCTCCATTGGAACACGGGCAGACAGGTCCGTTCGCGTG
GTGCCGGGCGACTCACGATGCGTATCGACGAATCGGAGTGCCGGTTGTCG
GTCGTTGGCTGGCGTGCCACAAACAGAGGCCGTGGCTGTGTGTCGACTGG
GCCGAAGGAACCGGTTTGCACGAGTTGACGACGAGGCTTCACCTGGCACC
CGATATGGTCGTCACACTGGAATCGCCGCAGACTGCTTGTTTGCAAATCG
GAGAGCGGACCTTGCATGTGCAGTCGCTGACGACAGCCGAGTTCGTCATC
GAGAAGGGATGGTACTGTCCGGATTTTGGTGTGCGTCAGGAGACGTCTGT
CCTGAAACTGACTGCGACCTGTCAAATGCCCGGTTACATTGGCTGA
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