mRNA_M-pyrifera_M_contig123436.4799.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123436.4799.1
Unique NamemRNA_M-pyrifera_M_contig123436.4799.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A813B9T0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813B9T0_SYMMI)

HSP 1 Score: 217 bits (552), Expect = 3.030e-63
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFV SAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPEL GIDF
Sbjct:  411 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVASAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELDGIDF 519          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A2E7KLC2_9PLAN (Cytochrome c domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLC2_9PLAN)

HSP 1 Score: 214 bits (546), Expect = 9.980e-63
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFV SAFDFVDGVFIPDGQAGNA IIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPEL GIDF
Sbjct:  411 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVASAFDFVDGVFIPDGQAGNAKIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELDGIDF 519          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A518A7I1_9PLAN (Planctomycete cytochrome C n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A7I1_9PLAN)

HSP 1 Score: 196 bits (499), Expect = 3.060e-56
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            +DLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNV+TNRFV + F+F+DGVFIPDGQAG A I+VSSTGTT++GLP T+GKAWDMIRNGPVASQHSPEL GI+F
Sbjct:  411 VDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVKTNRFVAADFEFIDGVFIPDGQAGKAKIVVSSTGTTVSGLPATTGKAWDMIRNGPVASQHSPELDGINF 519          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A1P8WFW6_9PLAN (NPCBM/NEW2 domain protein n=2 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WFW6_9PLAN)

HSP 1 Score: 181 bits (459), Expect = 9.420e-51
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            LDLAD+VGGGNGLG G FR GIDART  +QTRDFGALGNV TN+FV +  +F+DGVFIPDG+AG A+I VSSTG T+TGLP+TSG AWDMIRNGPVASQHSPELGGIDF
Sbjct:  444 LDLADMVGGGNGLGNGTFRNGIDARTGVIQTRDFGALGNVVTNQFVKTKSEFIDGVFIPDGEAGKASIPVSSTGITVTGLPKTSGAAWDMIRNGPVASQHSPELGGIDF 552          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A518HSH2_9BACT (Planctomycete cytochrome C n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HSH2_9BACT)

HSP 1 Score: 177 bits (450), Expect = 1.490e-49
Identity = 86/109 (78.90%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            LDLADIVGGGNG GTG FRQGID R AKVQTRDFG LGNV  N+F  S FDFVDGVF+P G++G A I VSSTG T+TGLP TSG AWDMIRNGPVASQHSPEL GIDF
Sbjct:  404 LDLADIVGGGNGSGTGTFRQGIDVRNAKVQTRDFGRLGNVVPNQFAASDFDFVDGVFVPSGESGQAKIPVSSTGMTVTGLPTTSGDAWDMIRNGPVASQHSPELDGIDF 512          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A2A2WBZ8_9BACT (Cytochrome c domain-containing protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2A2WBZ8_9BACT)

HSP 1 Score: 176 bits (447), Expect = 3.840e-49
Identity = 86/109 (78.90%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            LDLADIVGGGNG G+G FRQGID R AKVQTRDFG LGNV  NRF  S FDFVDGVF+P G+AG A I V+STG TI+GLP TSG AWDMIRNGPVASQHSPEL GIDF
Sbjct:  413 LDLADIVGGGNGSGSGTFRQGIDVRNAKVQTRDFGKLGNVVPNRFAASDFDFVDGVFVPSGEAGQAKIPVTSTGITISGLPTTSGDAWDMIRNGPVASQHSPELDGIDF 521          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A5C6B2N9_9BACT (Planctomycete cytochrome C n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6B2N9_9BACT)

HSP 1 Score: 175 bits (444), Expect = 1.010e-48
Identity = 87/109 (79.82%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            L+LADIVGGGNGLG+G +R  ID R AKVQTRDFG LGNV TN F  S FDFVDGVFIPDG+ G A I VSSTG TITGLP+TSGKAWDMIRNGPVASQHSPEL GIDF
Sbjct:  418 LNLADIVGGGNGLGSGTYRNAIDPRNAKVQTRDFGNLGNVVTNTFSPSPFDFVDGVFIPDGENGVAEIPVSSTGVTITGLPKTSGKAWDMIRNGPVASQHSPELDGIDF 526          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A5B9MBD6_9BACT (Planctomycete cytochrome C n=2 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9MBD6_9BACT)

HSP 1 Score: 174 bits (441), Expect = 2.510e-48
Identity = 87/109 (79.82%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            +DLADIVGGGNG  TG FRQGID RTAKVQTRDFG LGNV TNRF  S F+FVDGVFIPDG  G A I VSSTG TI GLP TSG AWDMIRNGPVASQHSP L GIDF
Sbjct:  409 IDLADIVGGGNGSMTGVFRQGIDPRTAKVQTRDFGKLGNVVTNRFSESEFEFVDGVFIPDGDGGRAEIPVSSTGVTIRGLPGTSGNAWDMIRNGPVASQHSPALDGIDF 517          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A5C6F610_9BACT (Planctomycete cytochrome C n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6F610_9BACT)

HSP 1 Score: 172 bits (437), Expect = 8.890e-48
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            L+LADIVGGG+GLG+G +R  +D R AKVQTRD G LGNV+TNRF  S F+F+DGVFIPDG+ G A I VSSTG TITGLP+TSG AWDMIRNGPVASQHSPELGGIDF
Sbjct:  439 LNLADIVGGGSGLGSGTYRNALDPRNAKVQTRDSGKLGNVETNRFSPSDFEFIDGVFIPDGEDGKAEIPVSSTGITITGLPKTSGDAWDMIRNGPVASQHSPELGGIDF 547          
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Match: A0A2E0AVZ2_9BACT (Cytochrome c domain-containing protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0AVZ2_9BACT)

HSP 1 Score: 169 bits (428), Expect = 1.450e-46
Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAFDFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQHSPELGGIDF 327
            LDLADIVGGGNGLGTG +R  +D R AKVQTRDFG LGNV+TN F    FDFVDGVFIP+G +G A I V+STG T TGLP TSG AWDMIRNGPVASQHSPEL GI+F
Sbjct:  400 LDLADIVGGGNGLGTGTYRNALDPRNAKVQTRDFGKLGNVRTNTFSPCTFDFVDGVFIPNGDSGKAQIPVTSTGITATGLPTTSGDAWDMIRNGPVASQHSPELDGINF 508          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123436.4799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813B9T0_SYMMI3.030e-6398.17Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A2E7KLC2_9PLAN9.980e-6397.25Cytochrome c domain-containing protein n=6 Tax=Gim... [more]
A0A518A7I1_9PLAN3.060e-5685.32Planctomycete cytochrome C n=3 Tax=Gimesia panaree... [more]
A0A1P8WFW6_9PLAN9.420e-5178.90NPCBM/NEW2 domain protein n=2 Tax=Fuerstiella mari... [more]
A0A518HSH2_9BACT1.490e-4978.90Planctomycete cytochrome C n=1 Tax=Stieleria neptu... [more]
A0A2A2WBZ8_9BACT3.840e-4978.90Cytochrome c domain-containing protein n=2 Tax=Pla... [more]
A0A5C6B2N9_9BACT1.010e-4879.82Planctomycete cytochrome C n=1 Tax=Stieleria varia... [more]
A0A5B9MBD6_9BACT2.510e-4879.82Planctomycete cytochrome C n=2 Tax=Stieleria maior... [more]
A0A5C6F610_9BACT8.890e-4876.15Planctomycete cytochrome C n=1 Tax=Rubripirellula ... [more]
A0A2E0AVZ2_9BACT1.450e-4675.23Cytochrome c domain-containing protein n=2 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123436contigM-pyrifera_M_contig123436:5..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.0343451-CDS-M-pyrifera_M_contig123436:4..3311622815753.0343451-CDS-M-pyrifera_M_contig123436:4..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123436 5..331 -
1692277553.1598003-CDS-M-pyrifera_M_contig123436:4..3311692277553.1598003-CDS-M-pyrifera_M_contig123436:4..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123436 5..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123436.4799.1prot_M-pyrifera_M_contig123436.4799.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123436 5..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123436.4799.1

>prot_M-pyrifera_M_contig123436.4799.1 ID=prot_M-pyrifera_M_contig123436.4799.1|Name=mRNA_M-pyrifera_M_contig123436.4799.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
LDLADIVGGGNGLGTGAFRQGIDARTAKVQTRDFGALGNVQTNRFVTSAF
DFVDGVFIPDGQAGNANIIVSSTGTTITGLPQTSGKAWDMIRNGPVASQH
SPELGGIDF
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mRNA from alignment at M-pyrifera_M_contig123436:5..331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123436.4799.1 ID=mRNA_M-pyrifera_M_contig123436.4799.1|Name=mRNA_M-pyrifera_M_contig123436.4799.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig123436:5..331- (Macrocystis pyrifera P11B4 male)
CTGGATCTGGCGGACATCGTTGGTGGAGGCAACGGTCTGGGAACCGGTGC CTTTCGCCAGGGGATCGACGCCCGCACCGCAAAAGTCCAGACCCGCGACT TCGGCGCCCTGGGTAATGTGCAGACCAACCGGTTTGTCACGTCAGCGTTC GATTTCGTCGACGGCGTCTTCATCCCGGACGGGCAGGCGGGCAACGCGAA TATTATAGTGAGCTCTACCGGTACGACGATCACGGGGCTCCCCCAGACCT CGGGCAAAGCCTGGGACATGATCCGTAACGGCCCGGTCGCCAGCCAGCAT TCTCCCGAACTGGGTGGTATCGACTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123436:5..331-

>mRNA_M-pyrifera_M_contig123436.4799.1 ID=mRNA_M-pyrifera_M_contig123436.4799.1|Name=mRNA_M-pyrifera_M_contig123436.4799.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig123436:5..331- (Macrocystis pyrifera P11B4 male)
CTGGATCTGGCGGACATCGTTGGTGGAGGCAACGGTCTGGGAACCGGTGC
CTTTCGCCAGGGGATCGACGCCCGCACCGCAAAAGTCCAGACCCGCGACT
TCGGCGCCCTGGGTAATGTGCAGACCAACCGGTTTGTCACGTCAGCGTTC
GATTTCGTCGACGGCGTCTTCATCCCGGACGGGCAGGCGGGCAACGCGAA
TATTATAGTGAGCTCTACCGGTACGACGATCACGGGGCTCCCCCAGACCT
CGGGCAAAGCCTGGGACATGATCCGTAACGGCCCGGTCGCCAGCCAGCAT
TCTCCCGAACTGGGTGGTATCGACTTTCTGGATCTGGCGGACATCGTTGG
TGGAGGCAACGGTCTGGGAACCGGTGCCTTTCGCCAGGGGATCGACGCCC
GCACCGCAAAAGTCCAGACCCGCGACTTCGGCGCCCTGGGTAATGTGCAG
ACCAACCGGTTTGTCACGTCAGCGTTCGATTTCGTCGACGGCGTCTTCAT
CCCGGACGGGCAGGCGGGCAACGCGAATATTATAGTGAGCTCTACCGGTA
CGACGATCACGGGGCTCCCCCAGACCTCGGGCAAAGCCTGGGACATGATC
CGTAACGGCCCGGTCGCCAGCCAGCATTCTCCCGAACTGGGTGGTATCGA
CTTT
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