mRNA_M-pyrifera_M_contig123416.4795.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: A0A2E0RSP8_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RSP8_9ACTN) HSP 1 Score: 266 bits (680), Expect = 3.190e-87 Identity = 140/174 (80.46%), Postives = 150/174 (86.21%), Query Frame = 1
Query: 1 TYHLGSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLPCV 522
T+HLGSPWLGLL + LV LGANQIVTGLAFTLLA+SATSYLYQRSFSIGQNPPRIDRI +PPLV LTL VL +VIVVMRKTLAGL+ISA GESPV+ADALGF+VQR R+ T+AGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLPCV
Sbjct: 55 THHLGSPWLGLLAGLLVGAACGALLSGALVSLGANQIVTGLAFTLLALSATSYLYQRSFSIGQNPPRIDRISMPPLVVLTLVVLTIVIVVMRKTLAGLVISAAGESPVSADALGFDVQRVRHLTTVAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLPCV 228
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: A0A6V8KTP1_9ACTN (ABC transporter permease n=1 Tax=Phytohabitans rumicis TaxID=1076125 RepID=A0A6V8KTP1_9ACTN) HSP 1 Score: 211 bits (536), Expect = 2.130e-65 Identity = 112/174 (64.37%), Postives = 135/174 (77.59%), Query Frame = 1
Query: 1 TYHLGSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLPCV 522
T GSPWLGL A ++V + ANQIVTGLAFTLLA SAT+YLY+RS+++GQ+PPRI+R+ +PPLVAL +AVLA V ++ +T AGL+I+ATGE+P AADALG+ V R R AAT+AGS+L L GA+LVCGPLGLFIQNVTAGRGWVALALVVFA WRP CV
Sbjct: 55 TRSSGSPWLGLAAGLAVGAGCGALLAVLMVAVRANQIVTGLAFTLLASSATTYLYERSYTLGQSPPRIERLGMPPLVALVIAVLAAVWFLLNRTTAGLVITATGEAPEAADALGYRVARIRTAATVAGSALGGLAGAMLVCGPLGLFIQNVTAGRGWVALALVVFARWRPELCV 228
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: A0A6B1EHH6_9ACTN (ABC transporter permease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EHH6_9ACTN) HSP 1 Score: 184 bits (467), Expect = 5.600e-55 Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = 1
Query: 13 GSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLPCV 522
GSPW+GLL XXX A ++V +Q+VTG+AFT++A++AT+YL+Q + IG+ PPR++R+ + PLVALTL +A V + R+T GL ISA GESP +ADALG+NV R+ ATIAG +LA LGGAVLV GPLGLFI+ VTAGRGWVALALVVFAGWRP+P V
Sbjct: 59 GSPWIGLLAGLLXXXLTGGVFAGLVVTFRTSQVVTGIAFTIVAIAATTYLFQLRWDIGELPPRVERLGMWPLVALTLVCVAGVWFLFRRTTLGLTISAVGESPESADALGYNVVLIRWMATIAGGALAGLGGAVLVNGPLGLFIEEVTAGRGWVALALVVFAGWRPVPAV 228
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: A0A543FWH4_9PSEU (Nucleoside ABC transporter membrane protein n=3 Tax=Pseudonocardia TaxID=1847 RepID=A0A543FWH4_9PSEU) HSP 1 Score: 180 bits (457), Expect = 1.800e-53 Identity = 97/170 (57.06%), Postives = 124/170 (72.94%), Query Frame = 1
Query: 1 TYHLGSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRP 510
T G+PWLGL A ++V + A+QIVTGLAFTL A SAT+YL+++S+++GQ PPRI + + PLV + L VLA V ++ +T AGL++SA GE+P A DALG+ + R R AT+AGS+LA L GA+LVCGPLGLF+QNVTAGRGWVALALVVFA WRP
Sbjct: 55 TIASGTPWLGLGGGLLAGAACGGVLALLMVVVRADQIVTGLAFTLFAGSATTYLFEQSYTLGQAPPRIPSLSMAPLVVIVLVVLAGVWFLLTRTTAGLVLSAAGEAPEAVDALGYRIPRVRTLATVAGSALAGLAGAMLVCGPLGLFVQNVTAGRGWVALALVVFARWRP 224
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: UPI001E2DB2F3 (ABC transporter permease n=1 Tax=Pseudonocardia sp. TRM90224 TaxID=2812678 RepID=UPI001E2DB2F3) HSP 1 Score: 176 bits (445), Expect = 1.160e-51 Identity = 95/170 (55.88%), Postives = 122/170 (71.76%), Query Frame = 1
Query: 1 TYHLGSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRP 510
T G+PWLGL A ++V A+QIVTGLAFTL A+SAT+YL++ S++IG+ PPRI ID+ LV + + VLA V ++ +T GL++SA G++P A DALG+ V R AAT+AG++LA L GA+LVCGPLGLF+QNVTAGRGWVALALVVFA WRP
Sbjct: 55 TTATGTPWLGLGSGLLAGTACGVVLALLMVVARADQIVTGLAFTLFAISATTYLFELSYTIGEPPPRIPSIDMLELVVIVIVVLAAVWFLLARTSVGLVLSAAGDAPGAVDALGYRVTNVRGAATVAGNALAGLAGAMLVCGPLGLFVQNVTAGRGWVALALVVFARWRP 224
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: UPI000E34DF2F (ABC transporter permease n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E34DF2F) HSP 1 Score: 169 bits (429), Expect = 3.470e-49 Identity = 94/170 (55.29%), Postives = 116/170 (68.24%), Query Frame = 1
Query: 13 GSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLPCV 522
G WLGLL A ++ L +NQIVTGLAFTLLA S T++++Q+S+ IG +PPRI RI I L + LAV A V+ +T GL +++ GE+P A DALG+ V R R A + G++L LGGAVLVCGPLGLFIQNVTAGRGWVALALVVFA WRP C+
Sbjct: 66 GYTWLGLLAGVGAGLLCGVVLAFGILVLRSNQIVTGLAFTLLATSLTTFIFQQSYDIGASPPRIQRISIWLLALVVLAVFAAAWFVLERTSWGLALTSAGEAPHAVDALGYGVNRIRAVAVVTGNALVGLGGAVLVCGPLGLFIQNVTAGRGWVALALVVFARWRPSVCL 235
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: A0A349B0D8_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B0D8_9ACTN) HSP 1 Score: 167 bits (422), Expect = 3.710e-48 Identity = 89/174 (51.15%), Postives = 115/174 (66.09%), Query Frame = 1
Query: 1 TYHLGSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLPCV 522
T GSPW+GL+ + +V + ANQ+V GL TLL +AT+YL++ F IG PPRI+RI + LV LT+A+ A+ V+ +T GL ++A G++PVA DALG+ V R R AT+ LA LGGA LVCGPLGLF++NVT GRGWVALALVVFA WRP C+
Sbjct: 59 TNETGSPWVGLVAGAAAGALVGLVLSLAVVHVKANQMVAGLGITLLCTAATTYLFRTIFGIGTVPPRIERIGMDALVLLTIALFALAWFVLTRTTLGLALTAAGDAPVAVDALGYRVDRLRTGATVVSGVLAGLGGAALVCGPLGLFLENVTHGRGWVALALVVFARWRPWACL 232
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: A0A4R7JAC9_9ACTN (Simple sugar transport system permease protein n=1 Tax=Naumannella halotolerans TaxID=993414 RepID=A0A4R7JAC9_9ACTN) HSP 1 Score: 166 bits (420), Expect = 7.210e-48 Identity = 98/168 (58.33%), Postives = 131/168 (77.98%), Query Frame = 1
Query: 13 GSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLP 516
GS W+GL+ XXXXXXXXXXXX +VGLG NQIVTGLAFT+LA + T++L++ S++IG PPR+ + +P LVA+TL L +V + +T +G+ + A GE PVAA+ LG V +TR+ A I G++LA L GA+LVCGPLG+F+Q+VTAGRGW+ALALVVFA W+P+P
Sbjct: 61 GSAWVGLIXXXXXXXXXXXXXXXXMVGLGTNQIVTGLAFTILASAVTTFLFELSYTIGAAPPRVVGLGLPQLVAVTLVCLLLVWFWLERTNSGMRLGAVGEEPVAAETLGIPVIKTRFLALIGGNALAGLAGALLVCGPLGIFVQDVTAGRGWIALALVVFARWKPVP 228
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: UPI0013EB2E36 (ABC transporter permease n=1 Tax=Phytoactinopolyspora endophytica TaxID=1642495 RepID=UPI0013EB2E36) HSP 1 Score: 162 bits (410), Expect = 2.990e-47 Identity = 87/149 (58.39%), Postives = 114/149 (76.51%), Query Frame = 1
Query: 76 ATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRIDIPPLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPLPCV 522
A ++V + NQIVTGLAFTLLA +AT+Y++++S+S+G PPRI + + PL+A+ A L +V V+ +T AGL ++A GE PV+ DALG V R AAT AG++LA L GA+LVCGPLGLF+QNVTAGRGW+ALALVVFA WRP+ V
Sbjct: 12 AWLMVVVRTNQIVTGLAFTLLAGAATTYVFEQSYSLGTVPPRIASLSLAPLLAVAGAALLLVWFVLERTTAGLTLTAVGEDPVSVDALGTRVNPVRVAATTAGNALAGLAGALLVCGPLGLFVQNVTAGRGWIALALVVFARWRPVRVV 160
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Match: A0A6P0BYL1_RHILE (ABC transporter permease n=4 Tax=Rhizobium leguminosarum TaxID=384 RepID=A0A6P0BYL1_RHILE) HSP 1 Score: 112 bits (281), Expect = 5.550e-27 Identity = 78/190 (41.05%), Postives = 107/190 (56.32%), Query Frame = 1
Query: 1 TYHLGSPWLGLLVXXXXXXXXXXXXATVLVGLGANQIVTGLAFTLLAVSATSYLYQRSFSIGQNPPRIDRI---------DIP----------PLVALTLAVLAVVIVVMRKTLAGLIISATGESPVAADALGFNVQRTRYAATIAGSSLAALGGAVLVCGPLGLFIQNVTAGRGWVALALVVFAGWRPL 513
TY G+ WLG++ XXXXXX A V +G+NQ+V G+A LL V ATS+LY+ F +G PR+ DIP P+V L L ++ +V +VM +T G ++A GE P AA+ LG +V RTR+ + LA LGGA L G+FI N+TAGRG++ALA++V PL
Sbjct: 59 TYLTGNLWLGVIAGMXXXXXXGAVLALYAVLIGSNQVVVGVAINLLIVGATSFLYRTIFGVGTAQPRVTSFAPLELTSLSDIPLIGPLLFHQAPIVYLGLVLVPIVWIVMTRTSFGWQVAAVGEHPAAAETLGISVMRTRFICLLISGLLAGLGGAFLSLSATGIFIDNMTAGRGYIALAILVLGRRHPL 248 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123416.4795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig123416.4795.1 >prot_M-pyrifera_M_contig123416.4795.1 ID=prot_M-pyrifera_M_contig123416.4795.1|Name=mRNA_M-pyrifera_M_contig123416.4795.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp TYHLGSPWLGLLVGLLVGAVCGAILATVLVGLGANQIVTGLAFTLLAVSAback to top mRNA from alignment at M-pyrifera_M_contig123416:2..523- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig123416.4795.1 ID=mRNA_M-pyrifera_M_contig123416.4795.1|Name=mRNA_M-pyrifera_M_contig123416.4795.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig123416:2..523- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig123416:2..523- >mRNA_M-pyrifera_M_contig123416.4795.1 ID=mRNA_M-pyrifera_M_contig123416.4795.1|Name=mRNA_M-pyrifera_M_contig123416.4795.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig123416:2..523- (Macrocystis pyrifera P11B4 male)back to top |