prot_M-pyrifera_M_contig1233.4778.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig1233.4778.1
Unique Nameprot_M-pyrifera_M_contig1233.4778.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length49
Homology
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BLAST of mRNA_M-pyrifera_M_contig1233.4778.1 vs. uniprot
Match: D8LQ47_ECTSI (APPLE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ47_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.110e-9
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 0 
Query:    1 CCQECRKVSSCTHFTFDYKSGNCYLKSGKGTAIPHKGLVSGTVVVP 46
            CCQEC +   C+HFTFDY SG CYLK G+G      GLVSG   VP
Sbjct:  405 CCQECHQADGCSHFTFDYSSGVCYLKVGQGVQNFKVGLVSGMTPVP 450
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1233.4778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ47_ECTSI1.110e-958.70APPLE domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.50.4.10coord: 1..46
e-value: 2.8E-12
score: 48.1
IPR003609PAN/Apple domainPFAMPF00024PAN_1coord: 1..32
e-value: 9.4E-9
score: 35.1
IPR003609PAN/Apple domainPROSITEPS50948PANcoord: 1..48
score: 7.307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1233contigM-pyrifera_M_contig1233:13939..14085 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1233.4778.1mRNA_M-pyrifera_M_contig1233.4778.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig1233 13939..14085 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig1233.4778.1 ID=prot_M-pyrifera_M_contig1233.4778.1|Name=mRNA_M-pyrifera_M_contig1233.4778.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
CCQECRKVSSCTHFTFDYKSGNCYLKSGKGTAIPHKGLVSGTVVVPSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app