mRNA_M-pyrifera_M_contig123167.4755.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123167.4755.1
Unique NamemRNA_M-pyrifera_M_contig123167.4755.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123167.4755.1 vs. uniprot
Match: A0A1X0R0Z6_RHIZD (G-patch domain-containing protein n=4 Tax=Rhizopus TaxID=4842 RepID=A0A1X0R0Z6_RHIZD)

HSP 1 Score: 52.4 bits (124), Expect = 3.040e-6
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 LRSGSLVAEHAPPIEASNRGHRLLTLLGWQGGALGAATAAEETVVGALVEPIQAVVKLDRRGIG 192
            L  G +VA  A PI ++N GHR+L+ +GW+ G         +++ G + EPI+AVV+  RRG+G
Sbjct:  362 LMHGKMVASDAQPISSNNIGHRMLSAMGWKEG---------DSIGGGIKEPIKAVVRAKRRGLG 416
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BLAST of mRNA_M-pyrifera_M_contig123167.4755.1 vs. uniprot
Match: A0A151ZIQ5_9MYCE (G-patch domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZIQ5_9MYCE)

HSP 1 Score: 51.6 bits (122), Expect = 5.820e-6
Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:    1 LRSGSLVAEHAPPIEASNRGHRLLTLLGWQGGALGAATAAEETVVGALVEPIQAVVKLDRRGIGF 195
            ++ G +VA    PI +SN GH LL  LGW GG LG      +       EP+QAV++ +R G+GF
Sbjct:  804 IKHGDIVAADVSPISSSNVGHMLLKSLGWSGGGLGVKGEGRD-------EPLQAVIRKNRIGLGF 861
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BLAST of mRNA_M-pyrifera_M_contig123167.4755.1 vs. uniprot
Match: F1A3N1_DICPU (G-patch domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A3N1_DICPU)

HSP 1 Score: 50.4 bits (119), Expect = 1.500e-5
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    1 LRSGSLVAEHAPPIEASNRGHRLLTLLGWQGGALGAATAAEETVVGALVEPIQAVVKLDRRGIGF 195
            +R G +VAE+  PI  SN G  LL  +GW GG LGA           L EPIQAVV+ ++ G+G+
Sbjct:  963 VRHGDIVAENVQPIPTSNVGTGLLKKMGWLGGGLGATGQ-------GLEEPIQAVVRKEKFGLGY 1020
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BLAST of mRNA_M-pyrifera_M_contig123167.4755.1 vs. uniprot
Match: A0A8J4PTD3_9MYCE (G-patch domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PTD3_9MYCE)

HSP 1 Score: 50.1 bits (118), Expect = 2.040e-5
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    1 LRSGSLVAEHAPPIEASNRGHRLLTLLGWQGGALGAATAAEETVVGALVEPIQAVVKLDRRGIGF 195
            ++ G +VA+   P+  +N G+ LL  +GWQGG LG       ++   L EPIQA+V+ +R G+GF
Sbjct:  836 VKHGDIVAQDVAPLSHTNVGNILLKRMGWQGGGLG-------SIGQGLDEPIQAIVRKERFGLGF 893
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123167.4755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1X0R0Z6_RHIZD3.040e-640.63G-patch domain-containing protein n=4 Tax=Rhizopus... [more]
A0A151ZIQ5_9MYCE5.820e-641.54G-patch domain-containing protein n=1 Tax=Tieghemo... [more]
F1A3N1_DICPU1.500e-544.62G-patch domain-containing protein n=1 Tax=Dictyost... [more]
A0A8J4PTD3_9MYCE2.040e-540.00G-patch domain-containing protein n=1 Tax=Polyspho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123167contigM-pyrifera_M_contig123167:54..296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.7593415-CDS-M-pyrifera_M_contig123167:53..1461622815750.7593415-CDS-M-pyrifera_M_contig123167:53..146Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123167 54..146 -
1692277552.0005643-CDS-M-pyrifera_M_contig123167:53..1461692277552.0005643-CDS-M-pyrifera_M_contig123167:53..146Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123167 54..146 -
1622815750.76989-CDS-M-pyrifera_M_contig123167:191..2961622815750.76989-CDS-M-pyrifera_M_contig123167:191..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123167 192..296 -
1692277552.0097167-CDS-M-pyrifera_M_contig123167:191..2961692277552.0097167-CDS-M-pyrifera_M_contig123167:191..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123167 192..296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123167.4755.1prot_M-pyrifera_M_contig123167.4755.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123167 54..296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123167.4755.1

>prot_M-pyrifera_M_contig123167.4755.1 ID=prot_M-pyrifera_M_contig123167.4755.1|Name=mRNA_M-pyrifera_M_contig123167.4755.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
LRSGSLVAEHAPPIEASNRGHRLLTLLGWQGGALGAATAAEETVVGALVE
PIQAVVKLDRRGIGF*
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mRNA from alignment at M-pyrifera_M_contig123167:54..296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123167.4755.1 ID=mRNA_M-pyrifera_M_contig123167.4755.1|Name=mRNA_M-pyrifera_M_contig123167.4755.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig123167:54..296- (Macrocystis pyrifera P11B4 male)
CTCCGCAGCGGGAGCCTCGTGGCCGAGCACGCGCCGCCCATCGAGGCCTC
TAACAGAGGCCACCGCCTCCTCACTCTCTTGGGCTGGCAAGGAGGCGCTC
TGGGGGTCGCAGAGGAGACTCTCGCAGGCCCTGTCTCCCTCCAAACCGAG
GCTGCCACTGCTGCTGAAGAAACGGTGGTCGGTGCTCTTGTTGAGCCCAT
TCAGGCGGTGGTCAAGCTCGACAGGCGCGGCATTGGCTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123167:54..296-

>mRNA_M-pyrifera_M_contig123167.4755.1 ID=mRNA_M-pyrifera_M_contig123167.4755.1|Name=mRNA_M-pyrifera_M_contig123167.4755.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig123167:54..296- (Macrocystis pyrifera P11B4 male)
CTCCGCAGCGGGAGCCTCGTGGCCGAGCACGCGCCGCCCATCGAGGCCTC
TAACAGAGGCCACCGCCTCCTCACTCTCTTGGGCTGGCAAGGAGGCGCTC
TGGGGCTCCGCAGCGGGAGCCTCGTGGCCGAGCACGCGCCGCCCATCGAG
GCCTCTAACAGAGGCCACCGCCTCCTCACTCTCTTGGGCTGGCAAGGAGG
CGCTCTGGGGGCTGCCACTGCTGCTGAAGAAACGGTGGTCGGTGCTCTTG
TTGAGCCCATTCAGGCGGTGGTCAAGCTCGACAGGCGCGGCATTGGCTTC
TGAGCTGCCACTGCTGCTGAAGAAACGGTGGTCGGTGCTCTTGTTGAGCC
CATTCAGGCGGTGGTCAAGCTCGACAGGCGCGGCATTGGCTTCTGA
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