mRNA_M-pyrifera_M_contig122922.4705.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122922.4705.1
Unique NamemRNA_M-pyrifera_M_contig122922.4705.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: A0A5B1QIJ6_9AGAM (Nagb/rpia/CoA transferase-like protein n=2 Tax=Dentipellis TaxID=154746 RepID=A0A5B1QIJ6_9AGAM)

HSP 1 Score: 73.9 bits (180), Expect = 2.580e-13
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   37 PAVQRKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREE 285
            PA QR V+ L  KL+R+QV GSR+ ALET  +LR  +   R  ++  ++  +R++GR LV+AQP E A GN  R++L  +REE
Sbjct:    8 PASQRAVEALAAKLRRRQVLGSRTAALETVVVLRQVISKARFTNIEQLVGIIRSVGRKLVEAQPKEHAVGNTVRKLLHLLREE 90          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: A0A1Y2DCW4_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2DCW4_9BASI)

HSP 1 Score: 73.6 bits (179), Expect = 4.310e-13
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   37 PAVQRKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREECAT 294
            P V R+++ L TKL+R+Q+ GSR VALE  +LLR  V   +  S   ++ +L  +GRVL DA P EL   N+TRR+ + + EE AT
Sbjct:   14 PNVHRRIEALATKLRRRQLIGSRQVALEVVRLLREIVSSAKFSSFKQLVEHLDEVGRVLQDAGPKELVVTNMTRRIAMLISEEYAT 99          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: UPI0004417A3A (nagb/rpia/CoA transferase-like protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI0004417A3A)

HSP 1 Score: 73.2 bits (178), Expect = 4.930e-13
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   49 RKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREECAT 294
            R VD L++KL+R+QV GSR  ALET  +LR  V   R  +   ++  +RA+GR LV+AQP E   GN  R+VL  +REE +T
Sbjct:   12 RSVDNLVSKLRRRQVVGSRETALETVLVLRQVVSKARFSNFEQLIDLIRAVGRKLVEAQPKEHTVGNTVRKVLHHIREEYST 93          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: A0A4R0RDI2_9APHY (GCD complex subunit gcd7 n=2 Tax=Agaricomycetes TaxID=155619 RepID=A0A4R0RDI2_9APHY)

HSP 1 Score: 73.2 bits (178), Expect = 4.950e-13
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   46 QRKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREECAT 294
            QR V+TL++KL+R+QV GSR  ALET  +LR  V   +  ++  ++A +R++G+ LV+AQP E   GN  R+VL  +REE  T
Sbjct:   13 QRSVETLVSKLRRRQVVGSRDAALETVLVLRQVVSRAKFSNIDQLVAIIRSVGKRLVEAQPKEHTVGNTVRKVLHHIREEYNT 95          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: A0A165H9G6_9BASI (Nagb/rpia/CoA transferase-like protein n=2 Tax=Calocera TaxID=29888 RepID=A0A165H9G6_9BASI)

HSP 1 Score: 72.8 bits (177), Expect = 7.570e-13
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   49 RKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREECA 291
            ++++TL+ +L+R+QV G++  ALETA LLR  V + R  S+  +   +++I R L+DA P E A GN+ RRVL  +REE A
Sbjct:   15 KQIETLVARLRRRQVIGAQETALETALLLRQIVSVARFNSIEQLTQLIKSIARRLIDANPKEFAVGNIVRRVLRLIREETA 95          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: D8PSV4_SCHCM (Uncharacterized protein n=2 Tax=Schizophyllaceae TaxID=5332 RepID=D8PSV4_SCHCM)

HSP 1 Score: 72.4 bits (176), Expect = 9.390e-13
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   40 AVQRKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREECAT 294
            ++QR+V+ L ++L+R+ V GSR  ALET +LLR  V   R  ++  ++  +R +GR LVDAQP E + GN  R+VL  +REE  T
Sbjct:   11 SIQRQVENLASRLRRRSVVGSRVAALETVRLLRQVVSKARFHNIEQLVRIIRTVGRRLVDAQPKEHSVGNTVRKVLHHIREEYRT 95          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: A0A7D8V114_9TREE (Uncharacterized protein n=1 Tax=Vanrija humicola TaxID=5417 RepID=A0A7D8V114_9TREE)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-12
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   55 VDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREE 285
            VD L+ +L+R+Q+ GSR+VAL TA L+++ V   +  ++  +L+ +R +GR LV+A P ELAAGN+ RR++  +REE
Sbjct:   13 VDALVVRLRRRQIVGSRNVALATAALVQNIVRSVKYTTIDELLSIIRDVGRRLVEANPKELAAGNIVRRIMRLIREE 89          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: R7S839_TRAVS (Eukaryotic translation initiation factor 2B beta subunit n=4 Tax=Trametes TaxID=5324 RepID=R7S839_TRAVS)

HSP 1 Score: 72.0 bits (175), Expect = 1.270e-12
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   49 RKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREE 285
            R V+TL+ KL+R+QV GSR  ALETA +LR  V   R  ++  ++  +R +GR L +AQP E + GN  RRVL  VREE
Sbjct:   11 RAVETLVAKLRRRQVVGSREAALETAIVLRQVVSKARFTNIQQLITIIREVGRRLAEAQPKEHSVGNTVRRVLHNVREE 89          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: M7XZV8_RHOT1 (Translation initiation factor eIF-2B beta subunit n=5 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7XZV8_RHOT1)

HSP 1 Score: 72.0 bits (175), Expect = 1.490e-12
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   37 PAVQRKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREECAT 294
            P V +++D L  +L+R+Q+ GSR VALE  +L R  V   R      +LA+L  IGRVL DA P EL   N+TRR+ + +REE  T
Sbjct:   11 PNVHKRIDALAVRLRRRQLIGSREVALEVVRLFRDVVAGARFSPFDQLLAHLEEIGRVLQDAGPKELVVTNMTRRICMLIREEYQT 96          
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Match: F8P6L3_SERL9 (Uncharacterized protein n=2 Tax=Serpula lacrymans var. lacrymans TaxID=341189 RepID=F8P6L3_SERL9)

HSP 1 Score: 71.6 bits (174), Expect = 1.770e-12
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   40 AVQRKVDTLITKLKRKQVRGSRSVALETAQLLRHTVGMCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREECAT 294
            A QR V+ L +KL+R+QV GSR  ALET  +LR  V   R  ++  ++  +R++GR LVDAQP E   GN  R+VL  +REE  T
Sbjct:    9 ANQRVVENLASKLRRRQVVGSRETALETVLVLRQVVSKARFSNIDQLVEVIRSVGRKLVDAQPKEHTVGNTVRKVLHHIREEYHT 93          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122922.4705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5B1QIJ6_9AGAM2.580e-1345.78Nagb/rpia/CoA transferase-like protein n=2 Tax=Den... [more]
A0A1Y2DCW4_9BASI4.310e-1345.35Uncharacterized protein n=1 Tax=Leucosporidium cre... [more]
UPI0004417A3A4.930e-1347.56nagb/rpia/CoA transferase-like protein n=1 Tax=Pun... [more]
A0A4R0RDI2_9APHY4.950e-1345.78GCD complex subunit gcd7 n=2 Tax=Agaricomycetes Ta... [more]
A0A165H9G6_9BASI7.570e-1344.44Nagb/rpia/CoA transferase-like protein n=2 Tax=Cal... [more]
D8PSV4_SCHCM9.390e-1344.71Uncharacterized protein n=2 Tax=Schizophyllaceae T... [more]
A0A7D8V114_9TREE1.080e-1245.45Uncharacterized protein n=1 Tax=Vanrija humicola T... [more]
R7S839_TRAVS1.270e-1249.37Eukaryotic translation initiation factor 2B beta s... [more]
M7XZV8_RHOT11.490e-1245.35Translation initiation factor eIF-2B beta subunit ... [more]
F8P6L3_SERL91.770e-1247.06Uncharacterized protein n=2 Tax=Serpula lacrymans ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122922contigM-pyrifera_M_contig122922:15..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog112098.XP_008606916.1
Preferred nameEIF2B2
KEGG koko:K03372,ko:K03754,ko:K19041
KEGG TC2.A.1.25
KEGG Pathwayko00604,ko01100,ko03013,map00604,map01100,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0001541,GO:0001558,GO:0001666,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008361,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0014003,GO:0016043,GO:0017076,GO:0019001,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030516,GO:0030554,GO:0030900,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0032045,GO:0032268,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032991,GO:0033554,GO:0034248,GO:0034284,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036293,GO:0036294,GO:0040008,GO:0042063,GO:0042221,GO:0042552,GO:0042995,GO:0043005,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048638,GO:0048639,GO:0048699,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051239,GO:0051240,GO:0051246,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0097159,GO:0097367,GO:0097458,GO:0098772,GO:0120025,GO:0120035,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000026,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1184@1,KOG1465@2759
Ec32 ortholog descriptionInitiation factor 2B-related
Ec32 orthologEc-13_000580.1
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03012,ko04121
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.991226-CDS-M-pyrifera_M_contig122922:14..3231622815747.991226-CDS-M-pyrifera_M_contig122922:14..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122922 15..323 -
1692277550.771518-CDS-M-pyrifera_M_contig122922:14..3231692277550.771518-CDS-M-pyrifera_M_contig122922:14..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122922 15..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122922.4705.1prot_M-pyrifera_M_contig122922.4705.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122922 15..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122922.4705.1

>prot_M-pyrifera_M_contig122922.4705.1 ID=prot_M-pyrifera_M_contig122922.4705.1|Name=mRNA_M-pyrifera_M_contig122922.4705.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
SAEELSQWIRQWPAVQRKVDTLITKLKRKQVRGSRSVALETAQLLRHTVG
MCRCPSVAHMLAYLRAIGRVLVDAQPAELAAGNVTRRVLLFVREECATHQ
RSK
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mRNA from alignment at M-pyrifera_M_contig122922:15..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122922.4705.1 ID=mRNA_M-pyrifera_M_contig122922.4705.1|Name=mRNA_M-pyrifera_M_contig122922.4705.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig122922:15..323- (Macrocystis pyrifera P11B4 male)
AGCGCGGAAGAGCTGAGCCAGTGGATCCGACAGTGGCCTGCGGTGCAACG CAAGGTGGACACATTGATCACCAAGTTGAAGCGCAAGCAGGTCCGTGGCT CACGGTCTGTAGCTCTGGAAACCGCCCAGCTGCTGCGCCATACCGTCGGC ATGTGCCGGTGTCCCAGCGTCGCGCACATGCTAGCGTACCTGCGCGCCAT CGGCCGGGTGCTGGTGGACGCACAGCCTGCGGAGCTTGCTGCTGGCAACG TCACCCGCCGCGTGCTGCTGTTTGTTCGCGAGGAGTGCGCCACACACCAG CGCAGCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122922:15..323-

>mRNA_M-pyrifera_M_contig122922.4705.1 ID=mRNA_M-pyrifera_M_contig122922.4705.1|Name=mRNA_M-pyrifera_M_contig122922.4705.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig122922:15..323- (Macrocystis pyrifera P11B4 male)
AGCGCGGAAGAGCTGAGCCAGTGGATCCGACAGTGGCCTGCGGTGCAACG
CAAGGTGGACACATTGATCACCAAGTTGAAGCGCAAGCAGGTCCGTGGCT
CACGGTCTGTAGCTCTGGAAACCGCCCAGCTGCTGCGCCATACCGTCGGC
ATGTGCCGGTGTCCCAGCGTCGCGCACATGCTAGCGTACCTGCGCGCCAT
CGGCCGGGTGCTGGTGGACGCACAGCCTGCGGAGCTTGCTGCTGGCAACG
TCACCCGCCGCGTGCTGCTGTTTGTTCGCGAGGAGTGCGCCACACACCAG
CGCAGCAAGAGCGCGGAAGAGCTGAGCCAGTGGATCCGACAGTGGCCTGC
GGTGCAACGCAAGGTGGACACATTGATCACCAAGTTGAAGCGCAAGCAGG
TCCGTGGCTCACGGTCTGTAGCTCTGGAAACCGCCCAGCTGCTGCGCCAT
ACCGTCGGCATGTGCCGGTGTCCCAGCGTCGCGCACATGCTAGCGTACCT
GCGCGCCATCGGCCGGGTGCTGGTGGACGCACAGCCTGCGGAGCTTGCTG
CTGGCAACGTCACCCGCCGCGTGCTGCTGTTTGTTCGCGAGGAGTGCGCC
ACACACCAGCGCAGCAAG
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