mRNA_M-pyrifera_M_contig122919.4704.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122919.4704.1
Unique NamemRNA_M-pyrifera_M_contig122919.4704.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: A0A6M8ZJR8_TROMA (Photosystem I reaction center subunit VIII n=1 Tax=Tropaeolum majus TaxID=4020 RepID=A0A6M8ZJR8_TROMA)

HSP 1 Score: 67.4 bits (163), Expect = 2.950e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            M TFN+FPSIFVPLVGLVFPAIAMASLS+YVQKNKIF
Sbjct:    1 MTTFNNFPSIFVPLVGLVFPAIAMASLSIYVQKNKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: R4S0Z0_9ROSA (Photosystem I reaction center subunit VIII n=273 Tax=Mesangiospermae TaxID=1437183 RepID=R4S0Z0_9ROSA)

HSP 1 Score: 66.2 bits (160), Expect = 8.470e-14
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            MIT NS PSIFVPLVGLVFPAIAMASLSLYVQKNKIF
Sbjct:    1 MITLNSVPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: A0A649ZCV1_VAUCA (Photosystem I reaction center subunit VIII n=5 Tax=Vauquelinia TaxID=23231 RepID=A0A649ZCV1_VAUCA)

HSP 1 Score: 66.2 bits (160), Expect = 8.470e-14
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            MIT NSFP +FVPLVGLVFPAIAMASLSLY+QKNKIF
Sbjct:    1 MITLNSFPPVFVPLVGLVFPAIAMASLSLYIQKNKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: PSAI_GOSHI (Photosystem I reaction center subunit VIII n=138 Tax=Viridiplantae TaxID=33090 RepID=PSAI_GOSHI)

HSP 1 Score: 65.1 bits (157), Expect = 2.430e-13
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            M TF+SFPSIFVPLVGLVFPAIAMASLSLYVQK KIF
Sbjct:    1 MTTFSSFPSIFVPLVGLVFPAIAMASLSLYVQKTKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: A0A2Z4FG48_9ROSI (Photosystem I reaction center subunit VIII n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A2Z4FG48_9ROSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.460e-13
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            M T NSFPSIFVPLVGLVFPAIAMASLSLYVQK KIF
Sbjct:    1 MTTLNSFPSIFVPLVGLVFPAIAMASLSLYVQKTKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: A0A6H0CD01_ROSCN (Photosystem I reaction center subunit VIII n=176 Tax=Rosaceae TaxID=3745 RepID=A0A6H0CD01_ROSCN)

HSP 1 Score: 64.7 bits (156), Expect = 3.460e-13
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            MI FN+FPSIFVPLVGLVFPAIAM SLSL+VQKNKIF
Sbjct:    1 MIAFNNFPSIFVPLVGLVFPAIAMVSLSLHVQKNKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: A0A1V0IT14_9ROSA (Photosystem I reaction center subunit VIII n=1 Tax=Coleogyne ramosissima TaxID=401069 RepID=A0A1V0IT14_9ROSA)

HSP 1 Score: 63.9 bits (154), Expect = 6.990e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            MI  NSFPSI VPLVGLVFPAIAMASLSLY+QKNKIF
Sbjct:    1 MIILNSFPSILVPLVGLVFPAIAMASLSLYIQKNKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: A0A1V0IQC8_9ROSA (Photosystem I reaction center subunit VIII n=134 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1V0IQC8_9ROSA)

HSP 1 Score: 63.5 bits (153), Expect = 9.940e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            MI  NSFPSIFVPLVGLVFPA+AMASL LYVQKNKIF
Sbjct:    1 MIILNSFPSIFVPLVGLVFPALAMASLFLYVQKNKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: A0A0D2V567_GOSRA (Photosystem I reaction center subunit VIII n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2V567_GOSRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            MITFNSFPSIFVPLVGL+F AI MASLSLYVQK KIF
Sbjct:    1 MITFNSFPSIFVPLVGLLFKAIVMASLSLYVQKTKIF 37
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BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Match: A0A866UAY8_9ROSA (Photosystem I reaction center subunit VIII n=2 Tax=Spiraea TaxID=23224 RepID=A0A866UAY8_9ROSA)

HSP 1 Score: 62.8 bits (151), Expect = 1.970e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 TFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF 111
            T NSFPSIFVPLVGLVFPA+AMASL LYVQKNKIF
Sbjct:    2 TLNSFPSIFVPLVGLVFPALAMASLFLYVQKNKIF 36
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122919.4704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6M8ZJR8_TROMA2.950e-1491.89Photosystem I reaction center subunit VIII n=1 Tax... [more]
R4S0Z0_9ROSA8.470e-1494.59Photosystem I reaction center subunit VIII n=273 T... [more]
A0A649ZCV1_VAUCA8.470e-1489.19Photosystem I reaction center subunit VIII n=5 Tax... [more]
PSAI_GOSHI2.430e-1391.89Photosystem I reaction center subunit VIII n=138 T... [more]
A0A2Z4FG48_9ROSI3.460e-1391.89Photosystem I reaction center subunit VIII n=4 Tax... [more]
A0A6H0CD01_ROSCN3.460e-1389.19Photosystem I reaction center subunit VIII n=176 T... [more]
A0A1V0IT14_9ROSA6.990e-1389.19Photosystem I reaction center subunit VIII n=1 Tax... [more]
A0A1V0IQC8_9ROSA9.940e-1389.19Photosystem I reaction center subunit VIII n=134 T... [more]
A0A0D2V567_GOSRA1.410e-1289.19Photosystem I reaction center subunit VIII n=1 Tax... [more]
A0A866UAY8_9ROSA1.970e-1291.43Photosystem I reaction center subunit VIII n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122919contigM-pyrifera_M_contig122919:291..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue9e-08
Seed eggNOG ortholog3702.ATCG00510.1
Preferred namepsaI
KEGG koko:K02696
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.May help in the organization of the PsaL subunit
EggNOG OGs2E7JA@1,2SE4W@2759,37XVE@33090,3GMGP@35493
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size114
Cds size114
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.9479241-CDS-M-pyrifera_M_contig122919:290..4041622815747.9479241-CDS-M-pyrifera_M_contig122919:290..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122919 291..404 +
1692277550.75434-CDS-M-pyrifera_M_contig122919:290..4041692277550.75434-CDS-M-pyrifera_M_contig122919:290..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122919 291..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122919.4704.1prot_M-pyrifera_M_contig122919.4704.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122919 291..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122919.4704.1

>prot_M-pyrifera_M_contig122919.4704.1 ID=prot_M-pyrifera_M_contig122919.4704.1|Name=mRNA_M-pyrifera_M_contig122919.4704.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
MITFNSFPSIFVPLVGLVFPAIAMASLSLYVQKNKIF*
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mRNA from alignment at M-pyrifera_M_contig122919:291..404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122919.4704.1 ID=mRNA_M-pyrifera_M_contig122919.4704.1|Name=mRNA_M-pyrifera_M_contig122919.4704.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig122919:291..404+ (Macrocystis pyrifera P11B4 male)
ATGATAACTTTCAACAGCTTCCCCTCAATTTTTGTGCCTTTAGTGGGCTT
AGTATTTCCGGCAATTGCAATGGCTTCTTTATCTCTTTATGTTCAAAAAA
ACAAGATTTTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122919:291..404+

>mRNA_M-pyrifera_M_contig122919.4704.1 ID=mRNA_M-pyrifera_M_contig122919.4704.1|Name=mRNA_M-pyrifera_M_contig122919.4704.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig122919:291..404+ (Macrocystis pyrifera P11B4 male)
ATGATAACTTTCAACAGCTTCCCCTCAATTTTTGTGCCTTTAGTGGGCTT
AGTATTTCCGGCAATTGCAATGGCTTCTTTATCTCTTTATGTTCAAAAAA
ACAAGATTTTTTAGATGATAACTTTCAACAGCTTCCCCTCAATTTTTGTG
CCTTTAGTGGGCTTAGTATTTCCGGCAATTGCAATGGCTTCTTTATCTCT
TTATGTTCAAAAAAACAAGATTTTTTAG
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