mRNA_M-pyrifera_M_contig122816.4687.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122816.4687.1
Unique NamemRNA_M-pyrifera_M_contig122816.4687.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: A0A4W5N0W4_9TELE (Uncharacterized protein n=3 Tax=Salmoninae TaxID=504568 RepID=A0A4W5N0W4_9TELE)

HSP 1 Score: 64.3 bits (155), Expect = 2.820e-10
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTG---TPIPRPFPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAILA 339
            +A+ E   LWPNTP+ C+VS+GTG   T       S S+ A I  ++  A  +   H +  +++P   YFR +   + D+ +DE+R   +  +   GT ++  N    ++ A++LA
Sbjct:   46 LAIHECKLLWPNTPVQCVVSLGTGRYETASKNNTTSTSLKAKITNVISSATDTEEVHNMLDALLPPNTYFRFNPYMSQDIPLDESRPERLTFLQEEGTRYLERNEAKLNKAASVLA 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: UPI001E66BAAB (LOW QUALITY PROTEIN: calcium-independent phospholipase A2-gamma-like n=1 Tax=Salmo salar TaxID=8030 RepID=UPI001E66BAAB)

HSP 1 Score: 63.5 bits (153), Expect = 4.310e-10
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTG---TPIPRPFPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAILA 339
            +A+ E   LWPNTP+ C+VS+GTG   T       S S+ A I  ++  A  +   H +  +++P   YFR +   + D+ +DE+R   +  +   GT ++  N    ++ A++LA
Sbjct:   31 LAIHECKLLWPNTPVQCVVSLGTGRYETVNKNNTTSTSLKAKITNVISSATDTEEVHIMLDALLPPNTYFRFNPYMSVDIPLDESRXERLTFLQEEGTRYLERNEAKLNKAASVLA 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: A0A7R8X045_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X045_9CRUS)

HSP 1 Score: 65.5 bits (158), Expect = 4.970e-10
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTG------TPIPRPFPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAIL 336
            IAL EA  LWPN+PL+C+VS+GTG        +P P P+ SI   +  +L+ AA +   H +   ++P   YFRL+      V +DE  +   L M      ++  N    +R AAIL
Sbjct:  360 IALHEARLLWPNSPLECVVSLGTGKSQSHDNTLPSPSPT-SIKRKLLLVLDSAADTEGVHVMLQDLIPGHIYFRLNPYLRELVDLDETSEEKFLQMQEDTIMYLRRNDHLLERAAAIL 476
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: A0A7N8XKZ9_9TELE (Calcium-independent phospholipase A2-gamma-like n=4 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A7N8XKZ9_9TELE)

HSP 1 Score: 65.1 bits (157), Expect = 7.120e-10
Identity = 36/115 (31.30%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTG---TPIPRPFPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAIL 336
            +A+ EA  LWPNTPL+C+VS+GTG   TP        S+   +  ++  A  +   HA+  + +P   YFR +   + D+ +DE RQ  +  +   G  ++  N     ++A IL
Sbjct:  619 LAVHEAKCLWPNTPLECVVSLGTGRFETPGKNSTTYTSLKTKLTNVISSATDTEEVHAMLDAFLPPNTYFRFNPCMSEDISMDENRQEKLNLLQAEGVRYLERNEEKLKKVACIL 733
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: A0A8C7MM91_ONCKI (Patatin-like phospholipase domain containing 8 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7MM91_ONCKI)

HSP 1 Score: 63.9 bits (154), Expect = 1.680e-9
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTG---TPIPRPFPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAILA 339
            +A+ E   LWPNTP+ C+VS+GTG   T       S S+ A I  ++  A  +   H +  +++P   YFR +   + D+ +DE+R   +  +   GT ++  N    ++ A++LA
Sbjct:  294 LAIHECKLLWPNTPVQCVVSLGTGRYETGNKNNTTSTSLKAKITNVISSATDTEEVHIMLDALLPPNTYFRFNPYMSEDIPLDESRPERLTFLQEEGTRYLERNEAKLNKAASVLA 409
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: A0A1S3QVC0_SALSA (calcium-independent phospholipase A2-gamma-like n=16 Tax=Salmonidae TaxID=8015 RepID=A0A1S3QVC0_SALSA)

HSP 1 Score: 63.9 bits (154), Expect = 1.810e-9
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTG---TPIPRPFPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAILA 339
            +A+ E   LWPNTP+ C+VS+GTG   T       S S+ A I  ++  A  +   H +  +++P   YFR +   + D+ +DE+R   +  +   GT ++  N    ++ A++LA
Sbjct:  640 LAIHECKLLWPNTPVQCVVSLGTGRYETVNKNNTTSTSLKAKITNVISSATDTEEVHIMLDALLPPNTYFRFNPYMSEDIPLDESRPERLTFLQEEGTRYLERNEAKLNKAASVLA 755
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: UPI0011E9F7B9 (LOW QUALITY PROTEIN: calcium-independent phospholipase A2-gamma-like n=1 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011E9F7B9)

HSP 1 Score: 63.5 bits (153), Expect = 2.460e-9
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTGTPIPRPFPSP--------SIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAIL 336
            +A+ E   LWPNTPL+C+VS+GTG      F SP        S+ A +  ++  A  +   HA+  + +P   YFR +   + D+ +DE RQ  + A+   G  ++  N     + A IL
Sbjct:  585 LAIHECQCLWPNTPLECVVSLGTGR-----FESPGKXSTAYTSLKAKLTNVISSATDTEEVHAMLDAFLPPDTYFRFNPYMSEDISLDENRQEKLNALQAEGIRYLERNEEKLSKAARIL 699
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: A0A3Q3EWT7_9LABR (Calcium-independent phospholipase A2-gamma-like n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3EWT7_9LABR)

HSP 1 Score: 63.2 bits (152), Expect = 3.240e-9
Identity = 36/115 (31.30%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTG---TPIPRPFPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAIL 336
            +A+ E+  LWPNTPL+C+VS+GTG   TP        S+   I  ++  A  +   HA+  + +P   YFR +   + D+ +DE RQ  +  +   G  ++  N     ++A IL
Sbjct:  387 LAVHESKCLWPNTPLECVVSLGTGRFETPGRNSVAYTSLKNKINNVISSATDTEEVHAMLDAFLPPNTYFRFNPYMSDDIAMDENRQEKLNMLQAEGDRYLERNEEKLKKVARIL 501
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: A0A7J5YZT7_DISMA (PNPLA domain-containing protein n=5 Tax=Notothenioidei TaxID=8205 RepID=A0A7J5YZT7_DISMA)

HSP 1 Score: 63.2 bits (152), Expect = 3.390e-9
Identity = 35/115 (30.43%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTGTPIPRP---FPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAIL 336
            +A+ E+  LWPNTPL+C+VS+GTG     P     S S+   +  I+  A  +   H +  + +P+  YFR +   + D+ +DE RQ  +  +   G  ++  N     ++A IL
Sbjct:  687 LAIHESKCLWPNTPLECVVSLGTGRAFDTPGKGTTSTSLKTKLNNIISSATDTEEVHVMLDAFLPNGTYFRFNPYMSEDISMDENRQEKLNLLQAEGLRYLERNEEKLKKVARIL 801
[Close]
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Match: UPI001C05E251 (calcium-independent phospholipase A2-gamma-like isoform X1 n=2 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05E251)

HSP 1 Score: 63.2 bits (152), Expect = 3.390e-9
Identity = 35/115 (30.43%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:    1 IALAEAASLWPNTPLDCLVSIGTG---TPIPRPFPSPSIPAWIQTILELAASSHLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNENAPTFDRLAAIL 336
            +A+ E   LWPNTPL+C+VS+GTG   TP        S+   +  ++  A  +   HA+  + +P+  YFR +     D+ +DE+RQ  +  +   G  +++ N    +++A IL
Sbjct:  694 LAIHECKCLWPNTPLECVVSLGTGRFETPGKNSTTYTSLKTKLTNVISSATDTEEVHAMLDAFLPADTYFRFNPFLNEDISMDESRQEKLNQLQADGIRYLDRNEEKLNKVARIL 808
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122816.4687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4W5N0W4_9TELE2.820e-1030.17Uncharacterized protein n=3 Tax=Salmoninae TaxID=5... [more]
UPI001E66BAAB4.310e-1030.17LOW QUALITY PROTEIN: calcium-independent phospholi... [more]
A0A7R8X045_9CRUS4.970e-1035.59Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A7N8XKZ9_9TELE7.120e-1031.30Calcium-independent phospholipase A2-gamma-like n=... [more]
A0A8C7MM91_ONCKI1.680e-930.17Patatin-like phospholipase domain containing 8 n=1... [more]
A0A1S3QVC0_SALSA1.810e-930.17calcium-independent phospholipase A2-gamma-like n=... [more]
UPI0011E9F7B92.460e-931.67LOW QUALITY PROTEIN: calcium-independent phospholi... [more]
A0A3Q3EWT7_9LABR3.240e-931.30Calcium-independent phospholipase A2-gamma-like n=... [more]
A0A7J5YZT7_DISMA3.390e-930.43PNPLA domain-containing protein n=5 Tax=Notothenio... [more]
UPI001C05E2513.390e-930.43calcium-independent phospholipase A2-gamma-like is... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122816contigM-pyrifera_M_contig122816:176..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.4
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog8010.XP_010893434.1
Preferred namePNPLA8
KEGG koko:K16815
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001516,GO:0001676,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006690,GO:0006692,GO:0006693,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009056,GO:0009058,GO:0009395,GO:0009987,GO:0010876,GO:0012505,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016042,GO:0016053,GO:0016298,GO:0016787,GO:0016788,GO:0017076,GO:0019369,GO:0019637,GO:0019752,GO:0030554,GO:0031090,GO:0031903,GO:0031984,GO:0032309,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033559,GO:0034638,GO:0035639,GO:0036094,GO:0036151,GO:0036152,GO:0042175,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046337,GO:0046338,GO:0046394,GO:0046434,GO:0046456,GO:0046457,GO:0046470,GO:0046475,GO:0046486,GO:0046503,GO:0046717,GO:0046903,GO:0046942,GO:0047499,GO:0050482,GO:0051179,GO:0051234,GO:0052689,GO:0071702,GO:0071704,GO:0071715,GO:0072330,GO:0097159,GO:0097164,GO:0097367,GO:0098588,GO:0098805,GO:0098827,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901571,GO:1901575,GO:1901576,GO:1903963
EggNOG free text desc.Patatin-like phospholipase domain containing 8
EggNOG OGs38EK4@33154,3BBQR@33208,3CT9J@33213,47ZSP@7711,491B3@7742,4A542@7898,KOG4231@1,KOG4231@2759
COG Functional cat.I
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.959599-CDS-M-pyrifera_M_contig122816:175..5261622815746.959599-CDS-M-pyrifera_M_contig122816:175..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122816 176..526 -
1692277550.1967006-CDS-M-pyrifera_M_contig122816:175..5261692277550.1967006-CDS-M-pyrifera_M_contig122816:175..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122816 176..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122816.4687.1prot_M-pyrifera_M_contig122816.4687.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122816 176..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122816.4687.1

>prot_M-pyrifera_M_contig122816.4687.1 ID=prot_M-pyrifera_M_contig122816.4687.1|Name=mRNA_M-pyrifera_M_contig122816.4687.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
IALAEAASLWPNTPLDCLVSIGTGTPIPRPFPSPSIPAWIQTILELAASS
HLAHALAASIVPSRRYFRLDVAGAGDVRIDEARQSAILAMTHTGTTWVNE
NAPTFDRLAAILANARA
back to top

mRNA from alignment at M-pyrifera_M_contig122816:176..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122816.4687.1 ID=mRNA_M-pyrifera_M_contig122816.4687.1|Name=mRNA_M-pyrifera_M_contig122816.4687.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig122816:176..526- (Macrocystis pyrifera P11B4 male)
ATTGCACTGGCAGAAGCCGCTTCCCTTTGGCCCAACACCCCTCTTGACTG
CCTCGTCTCCATTGGCACCGGAACTCCAATCCCCAGACCATTCCCATCTC
CGTCCATTCCCGCCTGGATCCAAACCATTCTCGAACTTGCCGCTTCCTCC
CACCTCGCCCACGCACTTGCAGCCTCCATCGTCCCTTCCAGACGGTACTT
TCGACTCGATGTAGCCGGCGCAGGGGACGTGAGGATCGACGAAGCCAGGC
AATCTGCAATTCTGGCGATGACGCACACTGGCACCACGTGGGTCAACGAA
AATGCCCCAACCTTCGACAGACTAGCTGCCATTCTCGCAAACGCAAGGGC
G
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122816:176..526-

>mRNA_M-pyrifera_M_contig122816.4687.1 ID=mRNA_M-pyrifera_M_contig122816.4687.1|Name=mRNA_M-pyrifera_M_contig122816.4687.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig122816:176..526- (Macrocystis pyrifera P11B4 male)
ATTGCACTGGCAGAAGCCGCTTCCCTTTGGCCCAACACCCCTCTTGACTG
CCTCGTCTCCATTGGCACCGGAACTCCAATCCCCAGACCATTCCCATCTC
CGTCCATTCCCGCCTGGATCCAAACCATTCTCGAACTTGCCGCTTCCTCC
CACCTCGCCCACGCACTTGCAGCCTCCATCGTCCCTTCCAGACGGTACTT
TCGACTCGATGTAGCCGGCGCAGGGGACGTGAGGATCGACGAAGCCAGGC
AATCTGCAATTCTGGCGATGACGCACACTGGCACCACGTGGGTCAACGAA
AATGCCCCAACCTTCGACAGACTAGCTGCCATTCTCGCAAACGCAAGGGC
GATTGCACTGGCAGAAGCCGCTTCCCTTTGGCCCAACACCCCTCTTGACT
GCCTCGTCTCCATTGGCACCGGAACTCCAATCCCCAGACCATTCCCATCT
CCGTCCATTCCCGCCTGGATCCAAACCATTCTCGAACTTGCCGCTTCCTC
CCACCTCGCCCACGCACTTGCAGCCTCCATCGTCCCTTCCAGACGGTACT
TTCGACTCGATGTAGCCGGCGCAGGGGACGTGAGGATCGACGAAGCCAGG
CAATCTGCAATTCTGGCGATGACGCACACTGGCACCACGTGGGTCAACGA
AAATGCCCCAACCTTCGACAGACTAGCTGCCATTCTCGCAAACGCAAGGG
CG
back to top