mRNA_M-pyrifera_M_contig122577.4647.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122577.4647.1
Unique NamemRNA_M-pyrifera_M_contig122577.4647.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: A0A5A8EM82_CAFRO (GAS domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8EM82_CAFRO)

HSP 1 Score: 148 bits (373), Expect = 3.280e-39
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQALMIDI 525
            YEQKVKHLEYEHR  M R  ++  S    E  EH   EAELR  K ELR R+R+ E     EV  L +++E+ ++L +      +D LR  ++ RL  +R ++ LR +VE  E EER+NQH+ DL+ NH RDFGK+K+F+NGIT  N+ TIR+L+ +I  L+EKQ ASQALM+DI
Sbjct:   98 YEQKVKHLEYEHRQGMGRVSDAEASRLEEEGKEHMTREAELREAKRELRRRLRERERANETEVEDLTSRHEKALSLAKRDLATQLDGLRTQYETRLSSVRSELRLRHKVEAHEVEERRNQHIRDLMANHARDFGKVKDFFNGITDDNLRTIRELKGRIAGLQEKQVASQALMVDI 272          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: A0A812Z3R6_9DINO (DRC4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Z3R6_9DINO)

HSP 1 Score: 144 bits (364), Expect = 7.320e-38
Identity = 85/175 (48.57%), Postives = 114/175 (65.14%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQALMIDI 525
            Y QKVKHLEYEH++ + R           +   H   E  LRR+KAELR  + D+EA     V      +ER +   R  FR+ + EL+  +D RL++LR D+ L+R+VE+ E EERKNQH+ADL+ NH   F KMKEFYN ITR+N+ TI+DLRA+I+ + EKQ A+QALM+DI
Sbjct:   96 YAQKVKHLEYEHQNMLARIATQEKELVGGQDASHSTRELALRRKKAELRQALSDMEAHHEAAVVKAKADHERYLASLRDSFRRNMVELKARYDARLQRLRRDLTLQRKVEIHEVEERKNQHIADLVANHASQFAKMKEFYNEITRRNLRTIKDLRAKIEDMNEKQVANQALMVDI 270          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: D8LMQ7_ECTSI (PF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ7_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.510e-26
Identity = 69/175 (39.43%), Postives = 107/175 (61.14%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQALMIDI 525
            Y QKVKHLEYEH++ ++            E   HG   +EL R K +++  + +     AEE+  +   + +T+T  R  F  ++ ELR   D RL  L +D+ELRR+V++ E EERKN H+ DL++NHE+ FG+MK +YN IT  N+  IR L+ ++ ++++K  A+Q LM+DI
Sbjct:  103 YVQKVKHLEYEHQNNLKSITMDGEQLLGGEGDLHGNRSSELHRAKKDIKSEVEERYLLNAEEIAQVKKAHGKTLTKMREGFEVSLSELRARCDARLASLEDDLELRRKVDIHEIEERKNLHINDLMKNHEKAFGQMKAYYNDITNDNLKLIRSLKDELVEMKKKAVANQKLMLDI 277          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: A0A8J2SEB4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEB4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.170e-24
Identity = 67/175 (38.29%), Postives = 103/175 (58.86%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQALMIDI 525
            Y QKV+HLEYEHRHA+R  GE +      E+  H +    L++ K  +R  + + E   AEEVR L  +          +F + + EL     KRLE+L  D+++RR+V + E EERKN H+ DL+RNH++ FG+MK++YN IT  N+  I  L+ +++ +REK   ++    D+
Sbjct:   96 YLQKVRHLEYEHRHALRGVGEDTKHFDTEEKEAHEQRTHALKKAKTSIRTELGEREISNAEEVRELREQXXXXXXXXXLEFEEEIVELGSKCQKRLEQLETDLKMRRKVHIHEIEERKNLHINDLIRNHDKAFGQMKQYYNTITSDNLKLITSLKTEVKDMREKAQQNKVTTKDV 270          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: A0A7S2AGC2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AGC2_9DINO)

HSP 1 Score: 101 bits (251), Expect = 7.100e-22
Identity = 60/172 (34.88%), Postives = 108/172 (62.79%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQALM 516
            +EQKV++LEYEH+ + R+ GES+  + + ER  HG+S  E+ R K +++  ++D   +  E+V+ +   + +++   R +F            +++E+L+ D+EL R+VE+ E EERKNQH+ +L+ NH+  F ++K +YN IT  N+  I+ LR  IQ+++E++  +Q  M
Sbjct:  103 HEQKVQNLEYEHKESRRQVGESADMSVQKEREVHGESVLEMNREKLDIKRELKDRRLENEEDVKMMRQGFAKSLQKLRDQFXXXXXXXXXXXXEQVEQLKVDLELNRKVEIHEIEERKNQHINELMLNHQDAFDEIKAYYNDITFDNLNLIKSLRDDIQEMKEREKKNQKKM 274          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: A0A3S5BDA1_9PLAT (Dynein regulatory complex subunit 4 n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5BDA1_9PLAT)

HSP 1 Score: 97.8 bits (242), Expect = 1.220e-21
Identity = 58/155 (37.42%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLR 465
            Y+QKVKHL YEH++ +      S  A ++ + EHG+ EA+L+  K  L+   +D +    E +R  V +YE  +  TR  F + ++E+   H  +++K+ +D+ELR+++EL E EERKN  +  L+R+HE+ F ++K +YN IT  N+A I  L+
Sbjct:  106 YKQKVKHLLYEHQNNIAELKAESVVAIKIAQEEHGEKEAQLKYDKRVLKLENKDKQISGEESIRNTVREYEEKLLKTRLDFERELEEIETKHAAKIKKINDDLELRKKMELHETEERKNLQINSLIRSHEKAFSEIKNYYNDITLNNLALINSLK 260          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: A0A6S8H8Q2_DUNTE (Hypothetical protein n=3 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A6S8H8Q2_DUNTE)

HSP 1 Score: 100 bits (249), Expect = 1.300e-21
Identity = 62/175 (35.43%), Postives = 109/175 (62.29%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQALMIDI 525
            Y+QKVKHL YEH++ +         A ++++ E  K EAEL R K +L+ ++++ E    E +R    K    IT TR +   T +E +  ++K+++ LR+D+ELRR+ E+ E EERKN H+ +L++ HER F ++K +YN IT  N+  I+ L+  + ++++++  ++ LM +I
Sbjct:   95 YKQKVKHLLYEHQNNITTLKADGELALKLQQDEFRKREAELARDKRDLKMKLKEQELSHQEMIRDQKLKSGILITKTREECLGTANETQHNYEKKMKMLRDDLELRRKQEIHEIEERKNSHINELMKKHERAFAEIKNYYNDITHNNLDLIKTLKEDVAEMKKREAQNEKLMYEI 269          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: T2MI29_HYDVU (Dynein regulatory complex subunit 4 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2MI29_HYDVU)

HSP 1 Score: 99.0 bits (245), Expect = 4.900e-21
Identity = 58/169 (34.32%), Postives = 101/169 (59.76%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQ 507
            Y+QKVKHL YEH++ +         A ++ + EH   E +LR  K  L+  +++ E    + V+ L+   ++ +T+ R  + +   E+ + ++K++  LR+D+ELRR+ EL E EERKN  +  L++NHE+ F  +K +YN IT  N+A I  L+ Q++ +R K+  S+
Sbjct:  101 YKQKVKHLLYEHQNNITEVKAEGVVALKLAQEEHKTDEQKLRVEKRNLKVNLKEQELSNEDVVKTLLRAKDKDVTVLRNDYERKAKEIELKYEKKMISLRDDLELRRKTELHEVEERKNTQINTLMKNHEKAFSDIKNYYNDITLNNLALINSLKEQVEDMRRKEERSE 269          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: A0A3B3Q4C4_9TELE (Dynein regulatory complex subunit 4 n=3 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3Q4C4_9TELE)

HSP 1 Score: 97.4 bits (241), Expect = 1.730e-20
Identity = 61/175 (34.86%), Postives = 100/175 (57.14%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQALMIDI 525
            Y+QKVKHL YEH++ +           +V + EHG  E ELRR    L+   ++ E      V++L  K E  IT T   F + V E+   + K++E +R +++LRR+ E+ E EERKN H+  L++NHE+ F  +K +YN IT  N++ I  L+ Q+ + ++K+   +  M ++
Sbjct:   99 YKQKVKHLLYEHQNNIAELKTEGVLTSKVMQKEHGNQENELRRAMRALKVDYKEQELGHENLVKSLKLKQEEEITKTMSDFERQVREIEAKYKKKMEAMRAELDLRRKTEIHEIEERKNGHINTLMKNHEKAFSDIKNYYNDITINNLSLINSLKEQVDEKKKKEERMEKEMAEV 273          
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Match: A0A6P8RDT7_GEOSA (Dynein regulatory complex subunit 4 n=4 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8RDT7_GEOSA)

HSP 1 Score: 97.4 bits (241), Expect = 1.750e-20
Identity = 60/175 (34.29%), Postives = 102/175 (58.29%), Query Frame = 1
Query:    1 YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRGRMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLREDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVATIRDLRAQIQQLREKQTASQALMIDI 525
            Y+QKVKHL YEH++ +         + ++ + EH   E+ELRR    L+  +++ E      V+ L  K +  IT  R  F + V E+ + + K+++ LRE+ +LRR+ E+ E EERKN  +  L++NHE+ F  +K +YN IT  N+A I  L+ Q+++++ K+   +  M D+
Sbjct:  101 YKQKVKHLLYEHQNNISELKAEGSVSMKLSQKEHRLHESELRRDLRNLKVELKEQELANEMLVKNLKMKQDEEITELRNNFERQVQEIELKYSKKMDTLREEQDLRRKTEIHEVEERKNGQINTLMKNHEKAFSDIKNYYNDITLNNLALINSLKEQMEEMKRKEDRLEKEMTDL 275          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122577.4647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EM82_CAFRO3.280e-3949.14GAS domain-containing protein n=2 Tax=Sar TaxID=26... [more]
A0A812Z3R6_9DINO7.320e-3848.57DRC4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
D8LMQ7_ECTSI3.510e-2639.43PF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ7_ECT... [more]
A0A8J2SEB4_9STRA4.170e-2438.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2AGC2_9DINO7.100e-2234.88Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A3S5BDA1_9PLAT1.220e-2137.42Dynein regulatory complex subunit 4 n=1 Tax=Protop... [more]
A0A6S8H8Q2_DUNTE1.300e-2135.43Hypothetical protein n=3 Tax=Dunaliella tertiolect... [more]
T2MI29_HYDVU4.900e-2134.32Dynein regulatory complex subunit 4 n=2 Tax=Hydra ... [more]
A0A3B3Q4C4_9TELE1.730e-2034.86Dynein regulatory complex subunit 4 n=3 Tax=Paramo... [more]
A0A6P8RDT7_GEOSA1.750e-2034.29Dynein regulatory complex subunit 4 n=4 Tax=Gymnop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122577contigM-pyrifera_M_contig122577:2..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.9e-23
Seed eggNOG ortholog2880.D8LMQ7
Preferred nameGAS8
KEGG koko:K14474,ko:K19942
KEGG Pathwayko05143,map05143
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003351,GO:0003355,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005815,GO:0005856,GO:0005874,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0017016,GO:0017137,GO:0019899,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031267,GO:0031514,GO:0032474,GO:0032475,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0033036,GO:0034613,GO:0034622,GO:0035082,GO:0035889,GO:0036064,GO:0036126,GO:0040011,GO:0042127,GO:0042471,GO:0042472,GO:0042692,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043393,GO:0043583,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045880,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048731,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051020,GO:0051098,GO:0051179,GO:0051641,GO:0051674,GO:0055001,GO:0060271,GO:0060285,GO:0060294,GO:0060322,GO:0060341,GO:0061061,GO:0065003,GO:0065007,GO:0065009,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0090596,GO:0097014,GO:0097223,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903564,GO:1903566,GO:1903827,GO:1903829,GO:1904526
EggNOG free text desc.positive regulation of protein localization to cilium
EggNOG OGs2BXFH@1,2QQDA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.2277374-CDS-M-pyrifera_M_contig122577:1..5261622815745.2277374-CDS-M-pyrifera_M_contig122577:1..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122577 2..526 +
1692277549.3270216-CDS-M-pyrifera_M_contig122577:1..5261692277549.3270216-CDS-M-pyrifera_M_contig122577:1..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122577 2..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122577.4647.1prot_M-pyrifera_M_contig122577.4647.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122577 2..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122577.4647.1

>prot_M-pyrifera_M_contig122577.4647.1 ID=prot_M-pyrifera_M_contig122577.4647.1|Name=mRNA_M-pyrifera_M_contig122577.4647.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
YEQKVKHLEYEHRHAMRRAGESSGSAHRVERVEHGKSEAELRRRKAELRG
RMRDLEAKQAEEVRALVTKYERTITLTRGKFRKTVDELRVGHDKRLEKLR
EDMELRRRVELREAEERKNQHLADLLRNHERDFGKMKEFYNGITRKNVAT
IRDLRAQIQQLREKQTASQALMIDI
back to top

mRNA from alignment at M-pyrifera_M_contig122577:2..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122577.4647.1 ID=mRNA_M-pyrifera_M_contig122577.4647.1|Name=mRNA_M-pyrifera_M_contig122577.4647.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig122577:2..526+ (Macrocystis pyrifera P11B4 male)
TACGAGCAGAAAGTGAAGCATCTGGAGTACGAGCATCGGCATGCGATGCG TCGTGCGGGGGAGAGCAGTGGGAGTGCGCATCGAGTGGAGCGTGTGGAGC ACGGGAAGAGTGAGGCGGAGCTTCGCAGGCGCAAAGCGGAGCTTCGCGGG CGTATGCGGGATTTGGAGGCGAAGCAGGCGGAGGAGGTGCGTGCGCTGGT GACCAAGTACGAGCGCACGATCACGTTGACGCGCGGCAAATTTCGGAAAA CGGTGGATGAGTTGCGGGTTGGTCATGACAAGCGGTTGGAGAAGCTTCGC GAGGATATGGAGCTGCGGCGACGCGTGGAGCTCAGAGAGGCGGAGGAGCG GAAGAACCAGCATTTGGCGGATTTGCTGCGGAACCACGAGCGCGATTTCG GCAAGATGAAGGAGTTTTACAACGGCATCACGCGCAAGAATGTGGCCACG ATTCGCGATTTGAGGGCGCAAATCCAGCAGCTGCGTGAGAAGCAGACTGC GAGCCAAGCGCTGATGATCGACATT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122577:2..526+

>mRNA_M-pyrifera_M_contig122577.4647.1 ID=mRNA_M-pyrifera_M_contig122577.4647.1|Name=mRNA_M-pyrifera_M_contig122577.4647.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig122577:2..526+ (Macrocystis pyrifera P11B4 male)
TACGAGCAGAAAGTGAAGCATCTGGAGTACGAGCATCGGCATGCGATGCG
TCGTGCGGGGGAGAGCAGTGGGAGTGCGCATCGAGTGGAGCGTGTGGAGC
ACGGGAAGAGTGAGGCGGAGCTTCGCAGGCGCAAAGCGGAGCTTCGCGGG
CGTATGCGGGATTTGGAGGCGAAGCAGGCGGAGGAGGTGCGTGCGCTGGT
GACCAAGTACGAGCGCACGATCACGTTGACGCGCGGCAAATTTCGGAAAA
CGGTGGATGAGTTGCGGGTTGGTCATGACAAGCGGTTGGAGAAGCTTCGC
GAGGATATGGAGCTGCGGCGACGCGTGGAGCTCAGAGAGGCGGAGGAGCG
GAAGAACCAGCATTTGGCGGATTTGCTGCGGAACCACGAGCGCGATTTCG
GCAAGATGAAGGAGTTTTACAACGGCATCACGCGCAAGAATGTGGCCACG
ATTCGCGATTTGAGGGCGCAAATCCAGCAGCTGCGTGAGAAGCAGACTGC
GAGCCAAGCGCTGATGATCGACATTTACGAGCAGAAAGTGAAGCATCTGG
AGTACGAGCATCGGCATGCGATGCGTCGTGCGGGGGAGAGCAGTGGGAGT
GCGCATCGAGTGGAGCGTGTGGAGCACGGGAAGAGTGAGGCGGAGCTTCG
CAGGCGCAAAGCGGAGCTTCGCGGGCGTATGCGGGATTTGGAGGCGAAGC
AGGCGGAGGAGGTGCGTGCGCTGGTGACCAAGTACGAGCGCACGATCACG
TTGACGCGCGGCAAATTTCGGAAAACGGTGGATGAGTTGCGGGTTGGTCA
TGACAAGCGGTTGGAGAAGCTTCGCGAGGATATGGAGCTGCGGCGACGCG
TGGAGCTCAGAGAGGCGGAGGAGCGGAAGAACCAGCATTTGGCGGATTTG
CTGCGGAACCACGAGCGCGATTTCGGCAAGATGAAGGAGTTTTACAACGG
CATCACGCGCAAGAATGTGGCCACGATTCGCGATTTGAGGGCGCAAATCC
AGCAGCTGCGTGAGAAGCAGACTGCGAGCCAAGCGCTGATGATCGACATT
back to top