mRNA_M-pyrifera_M_contig122573.4646.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122573.4646.1
Unique NamemRNA_M-pyrifera_M_contig122573.4646.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A6B1AV60_9ACTN (Cell division protein FtsX n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AV60_9ACTN)

HSP 1 Score: 191 bits (484), Expect = 4.070e-58
Identity = 101/132 (76.52%), Postives = 115/132 (87.12%), Query Frame = 1 
Query:    1 SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            +D V RVFL+G + LL A+TLLILTN+VSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGL QAV+GA+GAWVGL +L+  VI  L + ++LQLMQGFRV  GEF STSLLVLGIA+VVSG+GS VAVTRYLD
Sbjct:  166 ADKVTRVFLVGSVILLTAATLLILTNIVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLVQAVLGAMGAWVGLRILDDTVIKGLSEPDSLQLMQGFRVDQGEFYSTSLLVLGIAIVVSGIGSAVAVTRYLD 297
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A2D8LVK5_9ACTN (Cell division protein FtsX n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LVK5_9ACTN)

HSP 1 Score: 159 bits (402), Expect = 9.200e-46
Identity = 83/132 (62.88%), Postives = 104/132 (78.79%), Query Frame = 1 
Query:    1 SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            +D+VG VFL G L LL A+TLLILTN+VSAIR+RG EIEIMKVVGATNWFIR+PFMLEG+ QA++GA+ AW GLY+++  VI      ++L+LM GF+V   E + T  LVLGIA+ VS +GS +AVTRYLD
Sbjct:  166 ADEVGTVFLAGSLVLLAAATLLILTNIVSAIRNRGREIEIMKVVGATNWFIRIPFMLEGIMQALLGAVLAWGGLYVIDQRVIGRFSQPDSLELMAGFQVESDELIFTGGLVLGIALAVSVIGSSIAVTRYLD 297
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A3M2GVG3_ACTSX (Cell division protein FtsX n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GVG3_ACTSX)

HSP 1 Score: 154 bits (389), Expect = 8.230e-44
Identity = 80/132 (60.61%), Postives = 101/132 (76.52%), Query Frame = 1 
Query:    1 SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            +D +G +F +G L LLGA+TLLILT +V AI SR  EIEIMKVVGATNWFIR+PFMLEGL Q + GA+GA +  Y LN+YVI+   + ++LQL+ GFRV+  E   T+LL++ IAV V+ VGS VAVTRYLD
Sbjct:  166 ADRIGLIFFVGSLLLLGAATLLILTTLVIAINSRRQEIEIMKVVGATNWFIRIPFMLEGLVQGLAGAVGAVIATYFLNAYVIEGFSETSSLQLLDGFRVTSSELFRTNLLLIAIAVGVAVVGSAVAVTRYLD 297
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A354B6Z1_9ACTN (FtsX domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B6Z1_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 2.960e-38
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:   70 LTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            LTN+VSAIR+RG EIEIMKVVGATNWFIR+PFMLEG+ QA++GA+ AW GLY+++  VI      ++L+LM GF+V   E + T  LVLGIA+ VS +GS +AVTRYLD
Sbjct:    2 LTNIVSAIRNRGREIEIMKVVGATNWFIRIPFMLEGIMQALLGAVLAWGGLYVIDQRVIGRFSQPDSLELMAGFQVESDELIFTGGLVLGIALAVSVIGSSIAVTRYLD 110
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A6B0WIS5_9ACTN (Cell division protein FtsX n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WIS5_9ACTN)

HSP 1 Score: 129 bits (325), Expect = 2.990e-34
Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 1 
Query:    1 SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            S+  GRV  IG + LLGASTLLIL  +  AI +R AEIEIM++VGAT WFIRVPFMLEGL Q ++GA+ A     LL +YVID   D + LQL+ GF+V D   L  +LLV+ IAV V+ +GS +AV  +L+
Sbjct:  165 SNRAGRVLFIGSIVLLGASTLLILNTLAVAISNRRAEIEIMRLVGATKWFIRVPFMLEGLVQGLLGALVAITSNALLRNYVIDQFSDADGLQLLAGFKVDDAAMLQVNLLVVAIAVGVAVIGSNLAVAMHLN 296
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A520Y5G9_9ACTN (Cell division protein FtsX n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y5G9_9ACTN)

HSP 1 Score: 129 bits (325), Expect = 3.200e-34
Identity = 69/132 (52.27%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:    1 SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            ++ + R  L  G+ LL AST++ILT +  AI SR  EIEIMK+VGA+NWFIR+PFM+EG+ Q VIGA+ A  GL ++ +Y+I++    + L+L++GFRV+D EFL  SL VLGI  +V+ +GS+ AV+RYLD
Sbjct:  168 AEKISRATLWAGVTLLFASTIMILTTLSIAIASRRNEIEIMKLVGASNWFIRIPFMIEGMIQGVIGALIALPGLAIVRTYLIEDFSKSDVLRLLEGFRVTDAEFLFISLGVLGIGTLVATIGSIFAVSRYLD 299
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A6B1EG86_9ACTN (Cell division protein FtsX n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EG86_9ACTN)

HSP 1 Score: 116 bits (291), Expect = 3.350e-29
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 1 
Query:    1 SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            SD  GRV  IG + LL ASTLLIL  +  AI +R  EIEIM++VGAT  FIR+PFMLEGL Q ++GA  A     LL +YVID   D + L+L+ GF+V D      +LLVL IAV V+ VG+ +AV  +++
Sbjct:  165 SDRAGRVLFIGSIVLLAASTLLILNTLAVAIGNRRTEIEIMRLVGATKAFIRIPFMLEGLVQGLLGAAVAMTSNALLRNYVIDQFSDADGLRLLAGFKVDDAAMFQVNLLVLVIAVGVAVVGANLAVAMHIN 296
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A5Q2RN08_9ACTN (Cell division protein FtsX n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RN08_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 1.880e-28
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = 1 
Query:   10 VGRVFLIGGLFLLG----ASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNL-GDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            + RV  IG LF+ G    A+ LLIL  +  A+ +R  EIE+MK+VGATNWFIRVPFMLEGL Q ++GA  A   + +LN++    L G G++  ++QGF VS GE   TSL VLG+ + V  +GS +AV+RYLD
Sbjct:  164 LSRVLSIGILFVAGVLLLAAGLLILNTIRMAMFARRREIEVMKLVGATNWFIRVPFMLEGLIQGIVGAAVAVGSVVVLNNFFESRLSGSGDSFAILQGFAVSSGEVFGTSLFVLGVGIFVGVIGSGIAVSRYLD 297
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A3C2DDM9_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2DDM9_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 1.580e-27
Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 1 
Query:    1 SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            S+ V +  L+  + L+G S LLIL  V +AI +R  EIE+MK+VGATNWFIR+PFMLEG    +IGA  A   L++++  V+    + +A+ L +GF V DG    TS+ +L I  VV  +GS VAVTRYLD
Sbjct:   63 SNRVSQALLVAAVVLVGVSALLILNTVFTAIGARRQEIEVMKLVGATNWFIRIPFMLEGTIHGLIGAALAVPALFVVDHRVLAYFQESDAVPLFRGFAVPDGFVWDTSIWLLVIGGVVGMIGSAVAVTRYLD 194
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BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Match: A0A381TMF9_9ZZZZ (FtsX_ECD domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381TMF9_9ZZZZ)

HSP 1 Score: 110 bits (275), Expect = 7.900e-27
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 1 
Query:    1 SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWFIRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVSDGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLD 396
            S+ V +  L+  + L+  STLLIL  V +AI +R  EIE+MKVVGATNWFIR+PFMLEG    +IGA  A   L++++  V+    + +A+ L +GF V DG    TSL +L +   V  +GS VAVTRY D
Sbjct:  166 SNRVSQALLVAAVVLVAVSTLLILNTVFTAISARRQEIEVMKVVGATNWFIRIPFMLEGTIHGLIGAALAVPALFVVDDQVLAYFQESDAVPLFRGFAVPDGYIWDTSLWLLAVGGAVGMIGSAVAVTRYTD 297
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122573.4646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1AV60_9ACTN4.070e-5876.52Cell division protein FtsX n=1 Tax=Acidimicrobiace... [more]
A0A2D8LVK5_9ACTN9.200e-4662.88Cell division protein FtsX n=6 Tax=Acidimicrobiace... [more]
A0A3M2GVG3_ACTSX8.230e-4460.61Cell division protein FtsX n=1 Tax=Actinomyces sp.... [more]
A0A354B6Z1_9ACTN2.960e-3862.39FtsX domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A6B0WIS5_9ACTN2.990e-3454.55Cell division protein FtsX n=5 Tax=Acidimicrobiace... [more]
A0A520Y5G9_9ACTN3.200e-3452.27Cell division protein FtsX n=1 Tax=Acidimicrobiale... [more]
A0A6B1EG86_9ACTN3.350e-2950.76Cell division protein FtsX n=1 Tax=Acidimicrobiace... [more]
A0A5Q2RN08_9ACTN1.880e-2850.00Cell division protein FtsX n=1 Tax=Actinomarinicol... [more]
A0A3C2DDM9_9ACTN1.580e-2747.73Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A381TMF9_9ZZZZ7.900e-2746.97FtsX_ECD domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122573contigM-pyrifera_M_contig122573:2..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.5
Seed ortholog evalue6.6e-13
Seed eggNOG ortholog1313172.YM304_28310
Preferred nameftsX
KEGG koko:K09811,ko:K09812
KEGG TC3.A.1.140
KEGG Pathwayko02010,map02010
KEGG ModuleM00256
Hectar predicted targeting categorysignal peptide
GOsGO:0000910,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008356,GO:0009274,GO:0009276,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0016020,GO:0016021,GO:0016043,GO:0019221,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030312,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0032153,GO:0032506,GO:0034097,GO:0040007,GO:0042173,GO:0042221,GO:0043937,GO:0043938,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051301,GO:0051716,GO:0065007,GO:0070098,GO:0070297,GO:0070887,GO:0071310,GO:0071345,GO:0071840,GO:0071944,GO:0090529,GO:1902531
EggNOG free text desc.Part of the ABC transporter FtsEX involved in cellular division
EggNOG OGs2GJMA@201174,4CN4Q@84992,COG2177@1,COG2177@2
COG Functional cat.D
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03036
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.1944013-CDS-M-pyrifera_M_contig122573:1..4031622815745.1944013-CDS-M-pyrifera_M_contig122573:1..403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122573 2..403 +
1692277549.3121216-CDS-M-pyrifera_M_contig122573:1..4031692277549.3121216-CDS-M-pyrifera_M_contig122573:1..403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122573 2..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122573.4646.1prot_M-pyrifera_M_contig122573.4646.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122573 2..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122573.4646.1

>prot_M-pyrifera_M_contig122573.4646.1 ID=prot_M-pyrifera_M_contig122573.4646.1|Name=mRNA_M-pyrifera_M_contig122573.4646.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
SDDVGRVFLIGGLFLLGASTLLILTNVVSAIRSRGAEIEIMKVVGATNWF
IRVPFMLEGLAQAVIGAIGAWVGLYLLNSYVIDNLGDGNALQLMQGFRVS
DGEFLSTSLLVLGIAVVVSGVGSMVAVTRYLDT*
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mRNA from alignment at M-pyrifera_M_contig122573:2..403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122573.4646.1 ID=mRNA_M-pyrifera_M_contig122573.4646.1|Name=mRNA_M-pyrifera_M_contig122573.4646.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig122573:2..403+ (Macrocystis pyrifera P11B4 male)
TCCGACGACGTAGGCCGTGTCTTCCTCATCGGCGGGTTGTTCCTTCTCGG
CGCATCGACGCTGTTGATCCTCACCAATGTGGTGAGCGCCATCCGCAGTC
GCGGGGCCGAGATCGAGATCATGAAGGTGGTGGGAGCGACCAACTGGTTC
ATCCGCGTCCCCTTCATGCTCGAGGGGTTGGCCCAGGCCGTGATAGGCGC
AATAGGGGCGTGGGTCGGGCTCTACCTCTTGAACTCGTATGTGATCGACA
ACCTCGGCGACGGCAACGCGCTCCAGCTGATGCAGGGCTTCCGGGTGAGC
GATGGCGAGTTCTTGTCCACGAGCCTGCTGGTTCTGGGCATCGCGGTGGT
CGTGTCGGGCGTGGGCTCGATGGTGGCTGTCACCCGCTATCTCGACACCT
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122573:2..403+

>mRNA_M-pyrifera_M_contig122573.4646.1 ID=mRNA_M-pyrifera_M_contig122573.4646.1|Name=mRNA_M-pyrifera_M_contig122573.4646.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig122573:2..403+ (Macrocystis pyrifera P11B4 male)
TCCGACGACGTAGGCCGTGTCTTCCTCATCGGCGGGTTGTTCCTTCTCGG
CGCATCGACGCTGTTGATCCTCACCAATGTGGTGAGCGCCATCCGCAGTC
GCGGGGCCGAGATCGAGATCATGAAGGTGGTGGGAGCGACCAACTGGTTC
ATCCGCGTCCCCTTCATGCTCGAGGGGTTGGCCCAGGCCGTGATAGGCGC
AATAGGGGCGTGGGTCGGGCTCTACCTCTTGAACTCGTATGTGATCGACA
ACCTCGGCGACGGCAACGCGCTCCAGCTGATGCAGGGCTTCCGGGTGAGC
GATGGCGAGTTCTTGTCCACGAGCCTGCTGGTTCTGGGCATCGCGGTGGT
CGTGTCGGGCGTGGGCTCGATGGTGGCTGTCACCCGCTATCTCGACACCT
GATCCGACGACGTAGGCCGTGTCTTCCTCATCGGCGGGTTGTTCCTTCTC
GGCGCATCGACGCTGTTGATCCTCACCAATGTGGTGAGCGCCATCCGCAG
TCGCGGGGCCGAGATCGAGATCATGAAGGTGGTGGGAGCGACCAACTGGT
TCATCCGCGTCCCCTTCATGCTCGAGGGGTTGGCCCAGGCCGTGATAGGC
GCAATAGGGGCGTGGGTCGGGCTCTACCTCTTGAACTCGTATGTGATCGA
CAACCTCGGCGACGGCAACGCGCTCCAGCTGATGCAGGGCTTCCGGGTGA
GCGATGGCGAGTTCTTGTCCACGAGCCTGCTGGTTCTGGGCATCGCGGTG
GTCGTGTCGGGCGTGGGCTCGATGGTGGCTGTCACCCGCTATCTCGACAC
CTGA
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