mRNA_M-pyrifera_M_contig122556.4644.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: UPI0019ACA568 (ATP-grasp domain-containing protein n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019ACA568) HSP 1 Score: 116 bits (291), Expect = 1.080e-28 Identity = 70/149 (46.98%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 7 FVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPRTITDTESFP--AKVILKPEWEHGSLGIDDASV 447
F+PVLHAAT RPDE DT+ A+ V AL RLGY +E++ P+ G + LA R P VFNLV+AV G + P L + +TG A++ SK G L AG+PTP D F A VI+KP WEHGSLGID ASV
Sbjct: 7 FIPVLHAATQSRPDEIDTIVAAQSVAGALARLGYATEIIGLAPDLGGLEALAARRPLLVFNLVDAVGGDCRLAAMVPARLDALALHYTGARTSAWLDTLSKIGTKLKLAHAGLPTPDWSQDGTGFDPDAHVIVKPVWEHGSLGIDPASV 155
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: A0A1F2XSE8_9PROT (ATP-grasp domain-containing protein n=1 Tax=Alphaproteobacteria bacterium RBG_16_64_48 TaxID=1797215 RepID=A0A1F2XSE8_9PROT) HSP 1 Score: 114 bits (284), Expect = 1.340e-27 Identity = 74/153 (48.37%), Postives = 91/153 (59.48%), Query Frame = 1
Query: 7 FVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARA---GVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPRTITDTESFP--AKVILKPEWEHGSLGIDDASVV 450
F+ VLHAAT RPDE DT+ TA+ V AL RLG+ +E++ P+ I L R P VFNLV+AV G+ C LAP AR G+A+TG A++ SK G L AG+PTP D AKVI+KP WEHGSLGID ASV+
Sbjct: 16 FISVLHAATESRPDEIDTIVTAKAVAGALSRLGFATEIIGLAPDLRGIDALPPRRPLLVFNLVDAVGGN---CRLAPMVPARLDALGLAYTGAGTSAWLDTLSKIGTKLKLAHAGLPTPDWSEDGTGLDPEAKVIVKPIWEHGSLGIDPASVM 165
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: A0A843RJ48_9PROT (D-alanine--D-alanine ligase n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RJ48_9PROT) HSP 1 Score: 113 bits (282), Expect = 2.210e-27 Identity = 70/150 (46.67%), Postives = 93/150 (62.00%), Query Frame = 1
Query: 7 FVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPRTITDTESFP--AKVILKPEWEHGSLGIDDASVV 450
++PVLH A A RPDEADT+ TAE + A+L+RLG+ SE+V+ + +A+LA P VFNLVEA++G +A LAP L + +TG A +K A LL AAG+PTP D F A+VI+K + EH SLG+D ASVV
Sbjct: 6 YLPVLHGAAADRPDEADTIVTAEAIAASLQRLGHDSEVVKLGLDLSVLAQLAAERPTLVFNLVEALEGDSALAQLAPAALDHFALPYTGSGLAAHHLTLTKTAAKRLLAAAGLPTPAWSPDGAGFAPDARVIVKSDTEHASLGLDAASVV 155
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: A0A1E3W8B2_9HYPH (Dala_Dala_lig_C domain-containing protein n=1 Tax=Methyloceanibacter superfactus TaxID=1774969 RepID=A0A1E3W8B2_9HYPH) HSP 1 Score: 112 bits (279), Expect = 3.260e-27 Identity = 70/158 (44.30%), Postives = 88/158 (55.70%), Query Frame = 1
Query: 1 KAFVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPRTITDTE--------SFPAKVILKPEWEHGSLGIDDASVV 450
K F+ VLHAATA RPDE DT+ AE V AL LGY +E+V +P+ G + L R P VFNLV+AV+G + P L G+ +TG A++ SK G L G+PTP D AKVI+KP WEHGSLG+DD SV+
Sbjct: 6 KGFISVLHAATASRPDEIDTVLAAEAVTLALRELGYAAEIVGLMPDLGGLDALPSRRPLVVFNLVDAVNGDGRLAPMVPARLDALGLRYTGACTTAWLDTLSKVGTKLKLAHEGLPTPVWSEDGRWPNGDDGVDAAAKVIVKPVWEHGSLGMDDTSVM 163
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: A0A1E3WD35_9HYPH (ATP-grasp domain-containing protein n=2 Tax=Methyloceanibacter marginalis TaxID=1774971 RepID=A0A1E3WD35_9HYPH) HSP 1 Score: 105 bits (262), Expect = 2.060e-24 Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 7 FVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPRTITDTESFPA--KVILKPEWEHGSLGIDDASVV 450
F+PVLHAAT RPDE DTL A+ V AAL+ LGY +E++ + + L+ P VFNLV+AVDG + P L G+ +TG A+ SK L G+PTP D +VI+KP WEHGSLG++++SVV
Sbjct: 8 FIPVLHAATTSRPDEIDTLVAADAVAAALKHLGYNTEIIGLASDLSEVEALSASRPLLVFNLVDAVDGDGKLAPMVPERLDALGIPYTGCQTNAWRDTLSKIETKLRLAETGLPTPDWSEDGTGMAQQPRVIVKPVWEHGSLGLEESSVV 157
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: A0A845MCQ4_9PROT (D-alanine--D-alanine ligase n=1 Tax=Sneathiella chungangensis TaxID=1418234 RepID=A0A845MCQ4_9PROT) HSP 1 Score: 104 bits (259), Expect = 4.590e-24 Identity = 64/148 (43.24%), Postives = 89/148 (60.14%), Query Frame = 1
Query: 7 FVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPRTITDTESFPAKVILKPEWEHGSLGIDDASVV 450
++PVLH T R DE DT+E+A+H+ +ALERLGYRSE++ + + +A+ VFNLVE++ G LA +L G+A+TGV AF + SK + LL AA +PTPR TD + KVI+K EH S G+D S+V
Sbjct: 4 YIPVLHGGTDLRADELDTIESAKHIASALERLGYRSEVIALDIDFTVVETIAQAKSLVVFNLVESIRGDGRLGHLACAFLEHFGLAYTGVGESAFFQSNSKRLSKALLRAANLPTPREWTDVAAAGQKVIIKSVNEHASYGMDQNSIV 151
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: A0A4R2Q404_9RHOB (D-alanine-D-alanine ligase n=1 Tax=Rhodovulum marinum TaxID=320662 RepID=A0A4R2Q404_9RHOB) HSP 1 Score: 104 bits (259), Expect = 4.970e-24 Identity = 70/149 (46.98%), Postives = 82/149 (55.03%), Query Frame = 1
Query: 10 VPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPRTITDTESFPA--KVILKPEWEHGSLGIDDASVV 450
+ VLH A+ RPDE DTL TAE V AAL RLG+ LV P+ ++ LA P VFNLVEAV G AA P LAR G+AFTG A A K +L+ AG+PTP PA VI+K EH S+GID SVV
Sbjct: 6 IAVLHGASGDRPDEIDTLRTAETVAAALTRLGHAPTLVHLAPDMAALDRLAAAPPDLVFNLVEAVGGVAAPAAAIPARLARRGLAFTGCGARASRLCAEKPAMKRVLVRAGLPTPAWSMTRRGLPAGAPVIVKSTSEHASVGIDAGSVV 154
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: A0A353YG68_9HYPH (D-alanine--D-alanine ligase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A353YG68_9HYPH) HSP 1 Score: 99.8 bits (247), Expect = 2.860e-22 Identity = 66/151 (43.71%), Postives = 85/151 (56.29%), Query Frame = 1
Query: 7 FVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLA-AGIPTPRTITDTESFP--AKVILKPEWEHGSLGIDDASVV 450
F+PVLHAAT RPDE DTL AE V AL +LG+ + +V + + +L P VFNLV+AVDG P L G+ +TG ++ SK AT L LA AG+PTP D +VI+K WEHGSLG+D+ASV+
Sbjct: 8 FIPVLHAATTSRPDEIDTLIAAEAVSGALSQLGFATMIVELGRDLAELDDLTATRPLLVFNLVDAVDGDGRLAPFVPARLDALGLPYTGAGTSPWLETLSKV-ATKLRLAHAGLPTPGWSMDGTGLDPDTRVIVKAVWEHGSLGLDEASVM 157
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: UPI00110DD53A (D-alanine--D-alanine ligase n=1 Tax=Ruegeria sediminis TaxID=2583820 RepID=UPI00110DD53A) HSP 1 Score: 95.1 bits (235), Expect = 1.490e-20 Identity = 65/150 (43.33%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 7 FVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPR-TITDTESFPA-KVILKPEWEHGSLGIDDASVV 450
F+PVLH ATA RPDE DTL+TA + L +LG+RS+LV + +I++L P +FNLVEA+DG P L R G+ FTG A +K G L AAG+PTP ++T +VI+K EH S GID SVV
Sbjct: 5 FIPVLHGATAERPDEIDTLQTAGVICDTLRQLGHRSDLVHIGSDFAAISKLCATRPDLIFNLVEAIDGDCGLAAEIPVELERLGIPFTGCGALASELCLTKPGMKRALEAAGLPTPAWSLTGAGLIDVPRVIVKSVDEHASFGIDADSVV 154
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Match: A0A6L8W908_9PROT (D-alanine--D-alanine ligase n=2 Tax=Sneathiella TaxID=510690 RepID=A0A6L8W908_9PROT) HSP 1 Score: 89.0 bits (219), Expect = 2.780e-18 Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 7 FVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIAELARRAPACVFNLVEAVDGSAAGCLLAPWYLARAGVAFTGVVFGAFVAAASKAGATGLLLAAGIPTPRTITDTESFPAKVILKPEWEHGSLGIDDASVV 450
++PVLH T R DE DT+++A+ V AALE LGYRS ++ + I EL + P VFNLVE++ G+ + LA LA + +TG AF + SK + LL AA +PTP KVI+K EH S G+D S+V
Sbjct: 4 YIPVLHGGTDLRADELDTIDSAKCVAAALEYLGYRSNVIALDIDFAIIEELTKEQPLVVFNLVESIRGNGSLGHLACALLAHFHLPYTGAGETAFFQSNSKRLSKSLLRAANLPTPMEWAGAVPVGQKVIVKSVNEHASYGMDQKSIV 151 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122556.4644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig122556.4644.1 >prot_M-pyrifera_M_contig122556.4644.1 ID=prot_M-pyrifera_M_contig122556.4644.1|Name=mRNA_M-pyrifera_M_contig122556.4644.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp KAFVPVLHAATAGRPDEADTLETAEHVQAALERLGYRSELVRFVPESGSIback to top mRNA from alignment at M-pyrifera_M_contig122556:69..518+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig122556.4644.1 ID=mRNA_M-pyrifera_M_contig122556.4644.1|Name=mRNA_M-pyrifera_M_contig122556.4644.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig122556:69..518+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig122556:69..518+ >mRNA_M-pyrifera_M_contig122556.4644.1 ID=mRNA_M-pyrifera_M_contig122556.4644.1|Name=mRNA_M-pyrifera_M_contig122556.4644.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig122556:69..518+ (Macrocystis pyrifera P11B4 male)back to top |