mRNA_M-pyrifera_M_contig122554.4643.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122554.4643.1
Unique NamemRNA_M-pyrifera_M_contig122554.4643.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: A0A8H7ZR05_9FUNG (Origin recognition complex subunit 4 C-terminus-domain-containing protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZR05_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 1.850e-12
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  163 PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYS 396
            P V VL+E DLFA +         +QS+LY LFD+   E+  +A+VGVTCR+D L LLEKRV SRFS  QIR+  P S
Sbjct:   33 PVVFVLDEFDLFAEQP--------RQSLLYTLFDICQGEKSPIAVVGVTCRIDALELLEKRVKSRFSHRQIRLSPPAS 102          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: A0A0P7V9D8_SCLFO (Origin recognition complex subunit 4-like n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7V9D8_SCLFO)

HSP 1 Score: 72.0 bits (175), Expect = 4.900e-12
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   10 PGSLHSEPRTASQELLLALGGGGELE--AGEKVGMGSLEEEVEEVQRHLQQGP-----PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSVSQ 444
            PG L ++ R A +E+   L     LE   G+KV  GS  E +  +   L++G      P +  L+E DLF        T    Q++LY LFD+    +  +A+VG+TCRVD L LLEKRV SRFS  QI+  +P    + + LV+ +LS+ Q
Sbjct:    7 PGLLQTDDRIALKEITRQLN----LENVVGDKV-FGSFAENLAFLLEALKKGDRSSSRPVLFTLDEFDLF--------THHKNQTLLYNLFDISQSAQTPVAVVGLTCRVDVLELLEKRVKSRFSHRQIQALSPMDFPQYVELVQQQLSLPQ 145          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: A0A8C9T7I4_SCLFO (Origin recognition complex subunit 4 n=5 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9T7I4_SCLFO)

HSP 1 Score: 70.5 bits (171), Expect = 2.260e-11
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 1
Query:    1 LSLPGSLHSEPRTASQELLLALGGGGELE--AGEKVGMGSLEEEVEEVQRHLQQGP-----PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSVSQ 444
            + L G L ++ R A +E+   L     LE   G+KV  GS  E +  +   L++G      P +  L+E DLF        T    Q++LY LFD+    +  +A+VG+TCRVD L LLEKRV SRFS  QI+  +P    + + LV+ +LS+ Q
Sbjct:   97 VQLNGLLQTDDRIALKEITRQLN----LENVVGDKV-FGSFAENLAFLLEALKKGDRSSSRPVLFTLDEFDLF--------THHKNQTLLYNLFDISQSAQTPVAVVGLTCRVDVLELLEKRVKSRFSHRQIQALSPMDFPQYVELVQQQLSLPQ 238          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: U6D277_NEOVI (Origin recognition complex, subunit 4 (Fragment) n=2 Tax=Mustelidae TaxID=9655 RepID=U6D277_NEOVI)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  163 PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSV 438
            P + +L+E DLFA    Q+        +LY LFD+    +  LA++G+TCR+D L LLEKRV SRFS  QI +   +   + + + +++LS+
Sbjct:   15 PVIFILDEFDLFAHHKNQT--------LLYNLFDISQSAQTPLAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYLKIFKEQLSL 98          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: A0A3Q1BN39_AMPOC (Origin recognition complex subunit 4 n=4 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1BN39_AMPOC)

HSP 1 Score: 67.8 bits (164), Expect = 1.980e-10
Identity = 56/151 (37.09%), Postives = 81/151 (53.64%), Query Frame = 1
Query:    7 LPGSLHSEPRTASQELLLALGGGGELE--AGEKVGMGSLEEEVEEVQRHLQQGP-----PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSV 438
            L G L ++ R A +E+   L     LE   G+KV  GS  E +  +   L++G      P + VL+E DLFA    Q+        +LY LFD+    +  +A+VGVTCR+D L LLEKRV SRFS  QI + + +   + +  VR +LS+
Sbjct:   99 LNGLLQTDDRIALKEITRQLN----LENVVGDKV-FGSFAENLAFLLEALKKGDRSSSRPVLFVLDEFDLFAHHKNQT--------LLYNLFDVSQSAQTPVAVVGVTCRLDVLELLEKRVKSRFSHRQIHLLSSFGFSEYLQTVRTQLSL 236          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: UPI0020260D07 (origin recognition complex subunit 4 n=2 Tax=Gekkota TaxID=8560 RepID=UPI0020260D07)

HSP 1 Score: 67.4 bits (163), Expect = 2.700e-10
Identity = 52/151 (34.44%), Postives = 81/151 (53.64%), Query Frame = 1
Query:    7 LPGSLHSEPRTASQELLLALGGGGELE--AGEKVGMGSLEEEVEEVQRHLQQGP-----PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSV 438
            L G L +  + A +E+   L     LE   G+KV  GS  E +  +   L++G      P + +LEE DL+     QS        +LY LFD+    +  + ++G+TCR+D L LLEKRV SRFS  QI + +P+  KK  ++ +++LS+
Sbjct:   99 LNGLLQTNDKIALKEITKQLN----LENVVGDKV-FGSFSENLAFLLEALKRGDRAHSCPVLFILEEFDLYVHHKNQS--------LLYNLFDVSQSAQTPIVVIGLTCRLDVLELLEKRVKSRFSHRQIYLTSPFDFKKYASVCKEQLSL 236          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: H2ZTG2_LATCH (Origin recognition complex subunit 4 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZTG2_LATCH)

HSP 1 Score: 67.0 bits (162), Expect = 3.230e-10
Identity = 53/153 (34.64%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    7 LPGSLHSEPRTASQELLLALGGGGELE--AGEKVGMGSLEEEVEEVQRHLQQGP-----PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSVSQ 444
            L G L ++ +TA +E+   L    +LE   G+KV  GS  E +  +   L++G      P +  LEE DLFA    Q+        +LY LFD    E+  +A++G+TCR+D L LLEKRV SRFS  QI +   +  +  + +V+ ++S+ +
Sbjct:   25 LNGLLQTDDKTALKEITRQL----QLENVVGDKV-FGSFAENLAFLLEALKKGNRSSSRPVLFFLEEFDLFAHHKNQT--------LLYNLFDTSQSEQTPVAVIGLTCRLDVLELLEKRVKSRFSHRQIHLLNSFGFQDYLEIVKQQISLPE 164          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: A0A8C5NWX0_JACJA (Origin recognition complex subunit 4 n=9 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5NWX0_JACJA)

HSP 1 Score: 67.0 bits (162), Expect = 3.680e-10
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 1
Query:    7 LPGSLHSEPRTASQELLLALGGGGELE--AGEKVGMGSLEEEVEEVQRHLQQGP-----PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSV 438
            L G LH   + A +E+   L     LE   G+KV  GS  E +  +   L++G      P + VL+E DLFA    Q+        +LY LFD+    +  LA++G+TCR+D L LLEKRV SRFS  QI +   +   + I + +++LS+
Sbjct:   97 LNGLLHINDKIALKEITRQL----YLENVVGDKV-FGSFAENLSFLLEALKKGDRTHSCPVIFVLDEFDLFAHHKNQT--------LLYNLFDISQSAQTPLAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQFIKIFKEQLSL 234          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: UPI00155F6464 (origin recognition complex subunit 4-like isoform X1 n=5 Tax=Acipenseroidei TaxID=186622 RepID=UPI00155F6464)

HSP 1 Score: 66.6 bits (161), Expect = 5.020e-10
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 1
Query:    1 LSLPGSLHSEPRTASQELLLALGGGGELE--AGEKVGMGSLEEEVEEVQRHLQQGP-----PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSVSQ 444
            + L G L ++ R A +E+   L     LE   G+KV  GS  E +  +   L++G      P V +L+E DLFA    Q+        +LY LFD+    +  +A++G+TCR+D L LLEKRV SRFS  QI + + +  K+ + + + +LS+ +
Sbjct:   97 VQLNGLLQTDDRIALKEITRQL----HLENVVGDKV-FGSFAENLAFLLEALKKGDRSSSRPVVFILDEFDLFAHHKNQT--------LLYNLFDVSQSAQTPVAVIGLTCRLDVLELLEKRVKSRFSHRQIHLLSSFRFKQYLEIFKMQLSLPE 238          
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Match: UPI001C05CC31 (origin recognition complex subunit 4 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05CC31)

HSP 1 Score: 66.6 bits (161), Expect = 5.020e-10
Identity = 55/153 (35.95%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    1 LSLPGSLHSEPRTASQELLLALGGGGELE--AGEKVGMGSLEEEVEEVQRHLQQGP-----PTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIVGVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSV 438
            ++L G L ++ R A +E+   L    +LE   G+KV  GS  E +  +   L++G      P + VL+E DLFA    Q+        +LY LFD+    +  +A+VG TCR+D L LLEKRV SRFS  QI + +  +  + +  VR +LS+
Sbjct:   97 VNLNGLLQTDDRIALKEITRQL----QLENVVGDKV-FGSFAENLSFLLEALKKGDRSSSRPVLFVLDEFDLFAHHKNQT--------LLYNLFDVSQSAQAPIAVVGTTCRLDVLELLEKRVKSRFSHRQIHLLSSLTFAQYLERVRTQLSL 236          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122554.4643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7ZR05_9FUNG1.850e-1252.56Origin recognition complex subunit 4 C-terminus-do... [more]
A0A0P7V9D8_SCLFO4.900e-1237.50Origin recognition complex subunit 4-like n=1 Tax=... [more]
A0A8C9T7I4_SCLFO2.260e-1136.77Origin recognition complex subunit 4 n=5 Tax=Scler... [more]
U6D277_NEOVI1.300e-1038.04Origin recognition complex, subunit 4 (Fragment) n... [more]
A0A3Q1BN39_AMPOC1.980e-1037.09Origin recognition complex subunit 4 n=4 Tax=Pomac... [more]
UPI0020260D072.700e-1034.44origin recognition complex subunit 4 n=2 Tax=Gekko... [more]
H2ZTG2_LATCH3.230e-1034.64Origin recognition complex subunit 4 n=1 Tax=Latim... [more]
A0A8C5NWX0_JACJA3.680e-1035.76Origin recognition complex subunit 4 n=9 Tax=Jacul... [more]
UPI00155F64645.020e-1034.19origin recognition complex subunit 4-like isoform ... [more]
UPI001C05CC315.020e-1035.95origin recognition complex subunit 4 n=1 Tax=Melan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122554contigM-pyrifera_M_contig122554:1..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.6
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog38833.XP_003061717.1
Preferred nameORC4
KEGG koko:K02606
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000228,GO:0000808,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005664,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0031974,GO:0031981,GO:0032991,GO:0034285,GO:0034641,GO:0034645,GO:0036094,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1990837
EggNOG free text desc.origin recognition complex subunit 4
EggNOG OGs34II8@3041,37J7R@33090,KOG2228@1,KOG2228@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.0781007-CDS-M-pyrifera_M_contig122554:0..4441622815745.0781007-CDS-M-pyrifera_M_contig122554:0..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122554 1..444 -
1692277549.274309-CDS-M-pyrifera_M_contig122554:0..4441692277549.274309-CDS-M-pyrifera_M_contig122554:0..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122554 1..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122554.4643.1prot_M-pyrifera_M_contig122554.4643.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122554 1..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122554.4643.1

>prot_M-pyrifera_M_contig122554.4643.1 ID=prot_M-pyrifera_M_contig122554.4643.1|Name=mRNA_M-pyrifera_M_contig122554.4643.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
LSLPGSLHSEPRTASQELLLALGGGGELEAGEKVGMGSLEEEVEEVQRHL
QQGPPTVLVLEEMDLFAGKNGQSGTGSGQQSVLYLLFDLLHLEELRLAIV
GVTCRVDCLSLLEKRVVSRFSQLQIRVRAPYSKKKVIALVRDRLSVSQ
back to top

mRNA from alignment at M-pyrifera_M_contig122554:1..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122554.4643.1 ID=mRNA_M-pyrifera_M_contig122554.4643.1|Name=mRNA_M-pyrifera_M_contig122554.4643.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig122554:1..444- (Macrocystis pyrifera P11B4 male)
CTCAGCCTGCCCGGCTCCCTCCACAGCGAGCCCAGGACTGCCAGCCAGGA GCTGCTGCTGGCGCTGGGCGGCGGTGGCGAGCTGGAGGCCGGAGAGAAGG TGGGCATGGGCTCCCTGGAGGAGGAGGTGGAGGAGGTGCAGCGCCACCTC CAGCAGGGGCCGCCGACCGTGCTCGTGCTCGAGGAAATGGACCTCTTTGC GGGGAAGAACGGACAGTCAGGCACCGGCAGTGGACAGCAGTCGGTGCTGT ACCTCCTCTTCGACCTCCTCCACCTCGAAGAGCTGCGCCTCGCCATCGTG GGTGTCACCTGTCGGGTGGATTGCCTGTCACTCCTGGAGAAGCGCGTCGT CAGCCGCTTTTCTCAGCTTCAGATCCGTGTCAGGGCGCCCTATTCCAAGA AGAAGGTCATTGCTCTCGTCAGGGATCGGCTCTCCGTCTCACAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122554:1..444-

>mRNA_M-pyrifera_M_contig122554.4643.1 ID=mRNA_M-pyrifera_M_contig122554.4643.1|Name=mRNA_M-pyrifera_M_contig122554.4643.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig122554:1..444- (Macrocystis pyrifera P11B4 male)
CTCAGCCTGCCCGGCTCCCTCCACAGCGAGCCCAGGACTGCCAGCCAGGA
GCTGCTGCTGGCGCTGGGCGGCGGTGGCGAGCTGGAGGCCGGAGAGAAGG
TGGGCATGGGCTCCCTGGAGGAGGAGGTGGAGGAGGTGCAGCGCCACCTC
CAGCAGGGGCCGCCGACCGTGCTCGTGCTCGAGGAAATGGACCTCTTTGC
GGGGAAGAACGGACAGTCAGGCACCGGCAGTGGACAGCAGTCGGTGCTGT
ACCTCCTCTTCGACCTCCTCCACCTCGAAGAGCTGCGCCTCGCCATCGTG
GGTGTCACCTGTCGGGTGGATTGCCTGTCACTCCTGGAGAAGCGCGTCGT
CAGCCGCTTTTCTCAGCTTCAGATCCGTGTCAGGGCGCCCTATTCCAAGA
AGAAGGTCATTGCTCTCGTCAGGGATCGGCTCTCCGTCTCACAGCTCAGC
CTGCCCGGCTCCCTCCACAGCGAGCCCAGGACTGCCAGCCAGGAGCTGCT
GCTGGCGCTGGGCGGCGGTGGCGAGCTGGAGGCCGGAGAGAAGGTGGGCA
TGGGCTCCCTGGAGGAGGAGGTGGAGGAGGTGCAGCGCCACCTCCAGCAG
GGGCCGCCGACCGTGCTCGTGCTCGAGGAAATGGACCTCTTTGCGGGGAA
GAACGGACAGTCAGGCACCGGCAGTGGACAGCAGTCGGTGCTGTACCTCC
TCTTCGACCTCCTCCACCTCGAAGAGCTGCGCCTCGCCATCGTGGGTGTC
ACCTGTCGGGTGGATTGCCTGTCACTCCTGGAGAAGCGCGTCGTCAGCCG
CTTTTCTCAGCTTCAGATCCGTGTCAGGGCGCCCTATTCCAAGAAGAAGG
TCATTGCTCTCGTCAGGGATCGGCTCTCCGTCTCACAG
back to top