mRNA_M-pyrifera_M_contig122535.4640.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122535.4640.1
Unique NamemRNA_M-pyrifera_M_contig122535.4640.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122535.4640.1 vs. uniprot
Match: A0A140K6R8_9CYAN (Sulfotransferase n=1 Tax=Stanieria sp. NIES-3757 TaxID=1807358 RepID=A0A140K6R8_9CYAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.520e-7
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 PFGVKNSIYLLQLYEWLEVFDRDHLMLIVSEEFYAHTADVMDRVVNFLGVP 153
            P  +  S+YL QL  WLE+F+R+ L+++ SE+ Y + A VM++V  FLG+P
Sbjct:  590 PDNILGSLYLYQLQPWLELFNREQLLILPSEDLYNNPAQVMEQVFKFLGLP 640
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BLAST of mRNA_M-pyrifera_M_contig122535.4640.1 vs. uniprot
Match: K9XT64_STAC7 (Sulfotransferase n=1 Tax=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437) TaxID=111780 RepID=K9XT64_STAC7)

HSP 1 Score: 51.6 bits (122), Expect = 3.480e-6
Identity = 21/51 (41.18%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 PFGVKNSIYLLQLYEWLEVFDRDHLMLIVSEEFYAHTADVMDRVVNFLGVP 153
            P  +  S+Y  QL  WLE+F+R+ L+++ SE+ Y + A VM++V +FL +P
Sbjct:  590 PDNILGSLYFYQLQPWLELFNREQLLILPSEDLYNNPAQVMEQVFSFLDLP 640
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BLAST of mRNA_M-pyrifera_M_contig122535.4640.1 vs. uniprot
Match: A0A7S4ILP2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ILP2_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 1.660e-5
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    7 GVKNSIYLLQLYEWLEVFDRDHLMLIVSEEFYAHTADVMDRVVNFLGV 150
             V NS Y  Q+  W E++  D L+++ S+EFYAHT  VM+R+ +F+G+
Sbjct:  350 AVANSFYAAQILSWQELYG-DRLLVVNSDEFYAHTPSVMNRIADFIGL 396
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BLAST of mRNA_M-pyrifera_M_contig122535.4640.1 vs. uniprot
Match: D8FYV1_9CYAN (Sulfotransferase n=1 Tax=Kamptonema sp. PCC 6506 TaxID=272129 RepID=D8FYV1_9CYAN)

HSP 1 Score: 49.3 bits (116), Expect = 2.280e-5
Identity = 20/46 (43.48%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   16 NSIYLLQLYEWLEVFDRDHLMLIVSEEFYAHTADVMDRVVNFLGVP 153
              +Y+  + +WLE+F R+ L+++ SE+FY HTA VM +V+ F+G+P
Sbjct:  525 RGMYVEFIKKWLELFPREQLLILRSEDFYEHTAVVMKQVLEFVGLP 570
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BLAST of mRNA_M-pyrifera_M_contig122535.4640.1 vs. uniprot
Match: A0A1H8CRX7_9FIRM (Sulfotransferase domain-containing protein n=1 Tax=Candidatus Frackibacter sp. WG12 TaxID=2017977 RepID=A0A1H8CRX7_9FIRM)

HSP 1 Score: 48.9 bits (115), Expect = 3.110e-5
Identity = 19/46 (41.30%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   16 NSIYLLQLYEWLEVFDRDHLMLIVSEEFYAHTADVMDRVVNFLGVP 153
             SIY+ QL  WL +F R+ L+++ SE+ YA   +VM++++ FL +P
Sbjct:  383 RSIYINQLKRWLNIFPREQLLILKSEDLYAGPEEVMNKIIKFLNLP 428
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122535.4640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A140K6R8_9CYAN1.520e-745.10Sulfotransferase n=1 Tax=Stanieria sp. NIES-3757 T... [more]
K9XT64_STAC73.480e-641.18Sulfotransferase n=1 Tax=Stanieria cyanosphaera (s... [more]
A0A7S4ILP2_9EUKA1.660e-543.75Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
D8FYV1_9CYAN2.280e-543.48Sulfotransferase n=1 Tax=Kamptonema sp. PCC 6506 T... [more]
A0A1H8CRX7_9FIRM3.110e-541.30Sulfotransferase domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122535contigM-pyrifera_M_contig122535:15..176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.951991-CDS-M-pyrifera_M_contig122535:14..1761622815744.951991-CDS-M-pyrifera_M_contig122535:14..176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122535 15..176 -
1692277549.2338674-CDS-M-pyrifera_M_contig122535:14..1761692277549.2338674-CDS-M-pyrifera_M_contig122535:14..176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122535 15..176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122535.4640.1prot_M-pyrifera_M_contig122535.4640.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122535 15..176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122535.4640.1

>prot_M-pyrifera_M_contig122535.4640.1 ID=prot_M-pyrifera_M_contig122535.4640.1|Name=mRNA_M-pyrifera_M_contig122535.4640.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
PFGVKNSIYLLQLYEWLEVFDRDHLMLIVSEEFYAHTADVMDRVVNFLGV
PTQE
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mRNA from alignment at M-pyrifera_M_contig122535:15..176-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122535.4640.1 ID=mRNA_M-pyrifera_M_contig122535.4640.1|Name=mRNA_M-pyrifera_M_contig122535.4640.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig122535:15..176- (Macrocystis pyrifera P11B4 male)
CCCTTTGGCGTGAAGAACAGCATCTATCTCCTGCAGCTCTACGAGTGGCT
CGAGGTGTTCGACCGCGACCATCTCATGCTCATCGTCAGCGAAGAGTTCT
ACGCTCACACCGCCGACGTCATGGACAGGGTCGTCAACTTCCTCGGCGTC
CCCACCCAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122535:15..176-

>mRNA_M-pyrifera_M_contig122535.4640.1 ID=mRNA_M-pyrifera_M_contig122535.4640.1|Name=mRNA_M-pyrifera_M_contig122535.4640.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig122535:15..176- (Macrocystis pyrifera P11B4 male)
CCCTTTGGCGTGAAGAACAGCATCTATCTCCTGCAGCTCTACGAGTGGCT
CGAGGTGTTCGACCGCGACCATCTCATGCTCATCGTCAGCGAAGAGTTCT
ACGCTCACACCGCCGACGTCATGGACAGGGTCGTCAACTTCCTCGGCGTC
CCCACCCAGGAGCCCTTTGGCGTGAAGAACAGCATCTATCTCCTGCAGCT
CTACGAGTGGCTCGAGGTGTTCGACCGCGACCATCTCATGCTCATCGTCA
GCGAAGAGTTCTACGCTCACACCGCCGACGTCATGGACAGGGTCGTCAAC
TTCCTCGGCGTCCCCACCCAGGAG
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