mRNA_M-pyrifera_M_contig12251.4635.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12251.4635.1
Unique NamemRNA_M-pyrifera_M_contig12251.4635.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12251.4635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12251contigM-pyrifera_M_contig12251:7031..7702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.687305-CDS-M-pyrifera_M_contig12251:7031..71241622815744.687305-CDS-M-pyrifera_M_contig12251:7031..7124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12251 7032..7124 -
1692277549.1168633-CDS-M-pyrifera_M_contig12251:7031..71241692277549.1168633-CDS-M-pyrifera_M_contig12251:7031..7124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12251 7032..7124 -
1622815744.699745-CDS-M-pyrifera_M_contig12251:7486..77021622815744.699745-CDS-M-pyrifera_M_contig12251:7486..7702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12251 7487..7702 -
1692277549.1272101-CDS-M-pyrifera_M_contig12251:7486..77021692277549.1272101-CDS-M-pyrifera_M_contig12251:7486..7702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12251 7487..7702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12251.4635.1prot_M-pyrifera_M_contig12251.4635.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12251 7032..7702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12251.4635.1

>prot_M-pyrifera_M_contig12251.4635.1 ID=prot_M-pyrifera_M_contig12251.4635.1|Name=mRNA_M-pyrifera_M_contig12251.4635.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
VVIGVDEAVVKSALRHMCTQDSGARCVDCGGSSDILTDAYVSALAHETEK
TTRKRGRITLTDLSSKFELPIHVMEDIISAWMLDPSYDRIRLASGALMTE
SYQ
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mRNA from alignment at M-pyrifera_M_contig12251:7031..7702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12251.4635.1 ID=mRNA_M-pyrifera_M_contig12251.4635.1|Name=mRNA_M-pyrifera_M_contig12251.4635.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig12251:7031..7702- (Macrocystis pyrifera P11B4 male)
GTTGTGATCGGCGTGGATGAGGCCGTAGTGAAGTCGGCACTGCGGCATAT
GTGTACGCAGGACTCCGGGGCTCGATGTGTCGACTGTGGAGGGAGTTCTG
ATATTTTGACGGACGCATATGTGAGCGCCCTGGCTCATGAAACAGAAAAG
ACGACAAGGAAACGAGGGCGGATCACGTTGACAGATCTGTCATCGAAGTT
CGAGCTACCGATCCATGTGAGCCTGCGTCGGGGATCGTGTCGACTTTCGT
ATTCCTATTGCCCGCATGCAGTATTCGACGACACCACGAAACATGGAAAA
CATCTACCGTACTCGTATGATAGATGCTGTAATACCAACCAACACCAGTA
GCCCTTTTGCCTTGCACGCACCAGGTATACAGCATCGTAAGCATACAGTA
TACCTGGTAGCCCTGCCACGTTCCTGTGCTGTTTTGATATGCGTTCTTCT
CCCAAGGGACACAATTTGCTCTTTCGCTAAGCTATTGAACGTACGTGATT
GCAGATACAACAAGTATGTACAATGTACTAGTCTAATGTCTCAACGTCCT
CTTTTCACGGTTCGACCATCTTCCACAGGTCATGGAGGACATTATTTCTG
CCTGGATGCTTGATCCCTCATACGATAGAATTAGGCTGGCGAGTGGGGCC
CTAATGACAGAGTCATACCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12251:7031..7702-

>mRNA_M-pyrifera_M_contig12251.4635.1 ID=mRNA_M-pyrifera_M_contig12251.4635.1|Name=mRNA_M-pyrifera_M_contig12251.4635.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig12251:7031..7702- (Macrocystis pyrifera P11B4 male)
GTTGTGATCGGCGTGGATGAGGCCGTAGTGAAGTCGGCACTGCGGCATAT
GTGTACGCAGGACTCCGGGGCTCGATGTGTCGACTGTGGAGGGAGTTCTG
ATATTTTGACGGACGCATATGTGAGCGCCCTGGCTCATGAAACAGAAAAG
ACGACAAGGAAACGAGGGCGGATCACGTTGACAGATCTGTCATCGAAGTT
CGAGCTACCGATCCATGTTGTGATCGGCGTGGATGAGGCCGTAGTGAAGT
CGGCACTGCGGCATATGTGTACGCAGGACTCCGGGGCTCGATGTGTCGAC
TGTGGAGGGAGTTCTGATATTTTGACGGACGCATATGTGAGCGCCCTGGC
TCATGAAACAGAAAAGACGACAAGGAAACGAGGGCGGATCACGTTGACAG
ATCTGTCATCGAAGTTCGAGCTACCGATCCATGTCATGGAGGACATTATT
TCTGCCTGGATGCTTGATCCCTCATACGATAGAATTAGGCTGGCGAGTGG
GGCCCTAATGACAGAGTCATACCAAGTCATGGAGGACATTATTTCTGCCT
GGATGCTTGATCCCTCATACGATAGAATTAGGCTGGCGAGTGGGGCCCTA
ATGACAGAGTCATACCAA
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