mRNA_M-pyrifera_M_contig12244.4629.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12244.4629.1
Unique NamemRNA_M-pyrifera_M_contig12244.4629.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12244.4629.1 vs. uniprot
Match: D7FVD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD6_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 6.420e-53
Identity = 112/231 (48.48%), Postives = 151/231 (65.37%), Query Frame = 1 
Query:    7 QPWATSLPADVG-LGQIVDIRRVLPSWSKKSAGRGGRRSQTGYRDYGEGY-----PSEDGTGAGGHSFSSDEASLWWYTFACTGEGGEAGVSKRDNVFPELLERVKTNLKHRREHAEREEHKHRLTVARKRHSIVEKVIHQQHQQQVADHLCPHYS--QDRVTEAQRVAAVVIQACVRGFLERKKVAVLRAEMRVFGALQALVNELRQPELDEVSIADPMHSFAGILAEHT 675
            +PWATSLP+DVG    ++DIRR++P+W   + G  GR    G  D+ +G+      S+ G+G G   F SDEASLWWY ++  G        ++D VF ELLER KT  K R+EHAER+E +H+L VARKR  I++K+IH++   +VA   CP  S  + RVT AQR AA+ IQA +RG LERK+ ++LRAE RVFGALQ L+ ELRQPEL+      P+ +   ILA+H+
Sbjct:  225 KPWATSLPSDVGGYDDLLDIRRLVPAWPTHTVG--GR----GALDFVDGFIRNQHTSDGGSGTGDRKFDSDEASLWWYVYSTNGAQTSGLQQEQDGVFVELLERAKTTPKRRKEHAERDEQQHQLMVARKRQIIIDKMIHRR---KVAS--CPSLSCFKQRVTLAQRRAAITIQAFIRGCLERKQASLLRAEARVFGALQVLLTELRQPELEAEDTTRPLQTLGVILADHS 444
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12244.4629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVD6_ECTSI6.420e-5348.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12244contigM-pyrifera_M_contig12244:7314..9320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000720.1
Exons4
Model size675
Cds size675
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12244.4629.1prot_M-pyrifera_M_contig12244.4629.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12244 7314..9320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.338156-CDS-M-pyrifera_M_contig12244:7313..74061622815744.338156-CDS-M-pyrifera_M_contig12244:7313..7406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12244 7314..7406 -
1692277548.9029555-CDS-M-pyrifera_M_contig12244:7313..74061692277548.9029555-CDS-M-pyrifera_M_contig12244:7313..7406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12244 7314..7406 -
1622815744.3482435-CDS-M-pyrifera_M_contig12244:7983..81661622815744.3482435-CDS-M-pyrifera_M_contig12244:7983..8166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12244 7984..8166 -
1692277548.9119248-CDS-M-pyrifera_M_contig12244:7983..81661692277548.9119248-CDS-M-pyrifera_M_contig12244:7983..8166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12244 7984..8166 -
1622815744.357718-CDS-M-pyrifera_M_contig12244:8517..86461622815744.357718-CDS-M-pyrifera_M_contig12244:8517..8646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12244 8518..8646 -
1692277548.9236104-CDS-M-pyrifera_M_contig12244:8517..86461692277548.9236104-CDS-M-pyrifera_M_contig12244:8517..8646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12244 8518..8646 -
1622815744.3677294-CDS-M-pyrifera_M_contig12244:9050..93201622815744.3677294-CDS-M-pyrifera_M_contig12244:9050..9320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12244 9051..9320 -
1692277548.9317145-CDS-M-pyrifera_M_contig12244:9050..93201692277548.9317145-CDS-M-pyrifera_M_contig12244:9050..9320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12244 9051..9320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12244.4629.1

>prot_M-pyrifera_M_contig12244.4629.1 ID=prot_M-pyrifera_M_contig12244.4629.1|Name=mRNA_M-pyrifera_M_contig12244.4629.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=225bp
MFQPWATSLPADVGLGQIVDIRRVLPSWSKKSAGRGGRRSQTGYRDYGEG
YPSEDGTGAGGHSFSSDEASLWWYTFACTGEGGEAGVSKRDNVFPELLER
VKTNLKHRREHAEREEHKHRLTVARKRHSIVEKVIHQQHQQQVADHLCPH
YSQDRVTEAQRVAAVVIQACVRGFLERKKVAVLRAEMRVFGALQALVNEL
RQPELDEVSIADPMHSFAGILAEHT
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mRNA from alignment at M-pyrifera_M_contig12244:7314..9320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12244.4629.1 ID=mRNA_M-pyrifera_M_contig12244.4629.1|Name=mRNA_M-pyrifera_M_contig12244.4629.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at M-pyrifera_M_contig12244:7314..9320- (Macrocystis pyrifera P11B4 male)
ATGTTTCAGCCGTGGGCTACAAGCCTCCCAGCGGACGTGGGGCTCGGCCA
AATAGTAGACATTCGTCGCGTACTACCCTCCTGGTCAAAAAAATCGGCAG
GTCGGGGCGGTCGACGTTCACAAACAGGCTACAGAGACTACGGCGAAGGG
TATCCTAGCGAAGATGGTACTGGTGCCGGCGGTCACAGTTTTAGTAGCGA
TGAAGCCTCTTTATGGTGGTACACCTTCGCCTGCACGGGGGAAGGGGGTG
AGGCGGGTGTCTCGAAGAGGGTGAGTACTCATTTCGATATCTGTCGTACG
AACCCCCTGTACCAGTACGAACCAAATACCTCTATCATAACCTGTAGTAC
AACTACCGGCATCGTACATATCAATGAACATGTAGAGTGAGGGATGAAGT
TCGTGTGAGCATGAATGATGAAGGATCAAGGCTGTTTCGAGTGACACTCC
GGGCGCAACATTCCTACATGAAGGTTAACATCGCGCAAGAGAAAAGGTGG
TATTTTGGAGCTAGCGAACATACACCCTCCATCGCGCAACACACTCTTTG
ACAACGTCATCTTGTCGGCGACTAAAGCCCTGCCCACTGCCAACCCCTGT
CAATCCACGACTTATTGTCGTTCACTCGTCGTACTCATTATTGTCATCGG
GGGGAAATCTATTGGCGCCAATAGGATAACGTGTTTCCCGAGCTGCTGGA
GAGAGTGAAAACGAACCTAAAACACAGAAGGGAGCACGCCGAGCGAGAAG
AGCACAAACACCGACTTACGGTGGCGCGCAAGAGACACAGCATCGTTGAG
AAGGTAAATCAATTGTTTTTGTTACCTTTGTTGTTTTGCTGCTTTTGACT
GAGACATTGTGACGACCCACCTCTAGACCCTGGGCTGCAATCCACCGACA
GTAATAGTGTCCACTACACGAAGTGCTATAACATTGGATTGGTGGAGTTC
ACTTCTACAAGCAGTACCACATGTGTGAGTTCCAGGGGCTGATACCACCT
GACAGCAACGCATCATCCGGTCACCCCCTTGGGCCGCCTTTCAAATTCCT
TAAAACGTGTAGGATCGCTTTCGTAAGACTTTAGAACGAGCCGGCGGGAA
TACATACATTGTGCTTGTTACACCATTATATCAACACCCCTTGTACGGAC
TCAGGTTATCCATCAGCAACACCAGCAACAAGTCGCCGATCACCTGTGTC
CGCACTACTCACAAGATCGGGTGACGGAAGCTCAGCGGGTTGCGGCCGTA
GTTATTCAGGCGTGCGTCCGAGGATTTCTTGAGCGCAAGAAGGTGGCGGT
GTTGCGCGCGGAGATGCGGGTGTTTGGCGCTCTGCAGGTGGGGGGCTGCC
AAACATTTAGTAATACCGTATCCATGCGGTGTTCGTATGAACGTTTTTCG
TGGCCACAATAGCATCCCAATAGCCCGACAAACAGTCAAAATTGTGTTGT
ATCGTGTCCATCGTCAGTATGCATTTAGAGGCAGTGGCAGCCAGGCGTGA
TCCCATCATCACCAACAAGCACGCATATTCACATTTGAGTGCCGTACTTC
TGGGGTGGTGGGTTTCCAAGGAACATCGTCCATAGCACCAAGATGACCAC
CGTGCTAATACTCAAAGCCGAGAAGCAAATCGATCGGCGAGGCCCGCGTC
GAAGACATCTCCCCGGTGTTCCATCAATATAATTAATCAGTGTTAGTTGC
CTCTTGTACAGCGTTTGTAGCGATATAGCGAAGGCACCTCGTGTCCACTG
CTTATGTATGCCAGGGTGTGTACCCTGCGTGTACTTCCTCTGGTCGCAAC
TGTCTCGTACGCCACGCTCATGACTCTTCCCCTTCCACCCCTCTATCAAT
ACCTGATGCTGGTCTCAATCACCAAGCACACAACTGATCCCCCCCACGTG
CGCTTTCGATGCAGGCCCTGGTCAACGAACTCCGCCAGCCGGAGCTCGAC
GAAGTAAGCATCGCGGACCCCATGCACAGCTTCGCCGGTATCCTTGCCGA
GCACACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12244:7314..9320-

>mRNA_M-pyrifera_M_contig12244.4629.1 ID=mRNA_M-pyrifera_M_contig12244.4629.1|Name=mRNA_M-pyrifera_M_contig12244.4629.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1350bp|location=Sequence derived from alignment at M-pyrifera_M_contig12244:7314..9320- (Macrocystis pyrifera P11B4 male)
ATGTTTCAGCCGTGGGCTACAAGCCTCCCAGCGGACGTGGGGCTCGGCCA
AATAGTAGACATTCGTCGCGTACTACCCTCCTGGTCAAAAAAATCGGCAG
GTCGGGGCGGTCGACGTTCACAAACAGGCTACAGAGACTACGGCGAAGGG
TATCCTAGCGAAGATGGTACTGGTGCCGGCGGTCACAGTTTTAGTAGCGA
TGAAGCCTCTTTATGGTGGTACACCTTCGCCTGCACGGGGGAAGGGGGTG
AGGCGGGTGTCTCGAAGAGGATGTTTCAGCCGTGGGCTACAAGCCTCCCA
GCGGACGTGGGGCTCGGCCAAATAGTAGACATTCGTCGCGTACTACCCTC
CTGGTCAAAAAAATCGGCAGGTCGGGGCGGTCGACGTTCACAAACAGGCT
ACAGAGACTACGGCGAAGGGTATCCTAGCGAAGATGGTACTGGTGCCGGC
GGTCACAGTTTTAGTAGCGATGAAGCCTCTTTATGGTGGTACACCTTCGC
CTGCACGGGGGAAGGGGGTGAGGCGGGTGTCTCGAAGAGGGATAACGTGT
TTCCCGAGCTGCTGGAGAGAGTGAAAACGAACCTAAAACACAGAAGGGAG
CACGCCGAGCGAGAAGAGCACAAACACCGACTTACGGTGGCGCGCAAGAG
ACACAGCATCGTTGAGAAGGATAACGTGTTTCCCGAGCTGCTGGAGAGAG
TGAAAACGAACCTAAAACACAGAAGGGAGCACGCCGAGCGAGAAGAGCAC
AAACACCGACTTACGGTGGCGCGCAAGAGACACAGCATCGTTGAGAAGGT
TATCCATCAGCAACACCAGCAACAAGTCGCCGATCACCTGTGTCCGCACT
ACTCACAAGATCGGGTGACGGAAGCTCAGCGGGTTGCGGCCGTAGTTATT
CAGGCGTGCGTCCGAGGATTTCTTGAGCGCAAGAAGGTGGCGGTGTTGCG
CGCGGAGATGCGGGTGTTTGGCGCTCTGCAGGTTATCCATCAGCAACACC
AGCAACAAGTCGCCGATCACCTGTGTCCGCACTACTCACAAGATCGGGTG
ACGGAAGCTCAGCGGGTTGCGGCCGTAGTTATTCAGGCGTGCGTCCGAGG
ATTTCTTGAGCGCAAGAAGGTGGCGGTGTTGCGCGCGGAGATGCGGGTGT
TTGGCGCTCTGCAGGCCCTGGTCAACGAACTCCGCCAGCCGGAGCTCGAC
GAAGTAAGCATCGCGGACCCCATGCACAGCTTCGCCGGTATCCTTGCCGA
GCACACGGCCCTGGTCAACGAACTCCGCCAGCCGGAGCTCGACGAAGTAA
GCATCGCGGACCCCATGCACAGCTTCGCCGGTATCCTTGCCGAGCACACG
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