mRNA_M-pyrifera_M_contig122427.4626.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122427.4626.1
Unique NamemRNA_M-pyrifera_M_contig122427.4626.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A258R3Y8_9BURK (UPF0311 protein B7Y51_09710 n=1 Tax=Burkholderiales bacterium 28-67-8 TaxID=1970497 RepID=A0A258R3Y8_9BURK)

HSP 1 Score: 171 bits (432), Expect = 3.510e-52
Identity = 78/130 (60.00%), Postives = 94/130 (72.31%), Query Frame = 1
Query:    4 GPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGRVEYKVYQCVN 393
            GP G R I EVTGG F GP+L+GK       DW++ D  G+GHLDVR T ET DGA+IY+QYFG +VV + ++ AL      D+G THFFTQPRFETGD RY WLNQV+AVA+GRV  GRVEY+V+ C N
Sbjct:   22 GPHGTRAIFEVTGGAFEGPRLRGKLLT-GGGDWMLIDAQGMGHLDVRATFETHDGALIYVQYFGRVVVTEAISQALQGNGATDYGDTHFFTQPRFETGDARYAWLNQVIAVAQGRVCHGRVEYRVFACAN 150          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A7C1SCB5_9DELT (UPF0311 protein ENI07_08320 n=2 Tax=root TaxID=1 RepID=A0A7C1SCB5_9DELT)

HSP 1 Score: 163 bits (413), Expect = 2.720e-49
Identity = 76/131 (58.02%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 DGPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGRVEYKVYQCVN 393
            +GP+G R I + TGG F G +L GK    +  DW++FD DG+GHLDVR+TLET DGA IY+QY+G  V+N+ + AAL QG   ++G T+F TQPRFETGD RYKWLN V+AVAEGR+  G VEY+V + VN
Sbjct:   21 NGPYGARTIFDATGGTFEGQRLSGKVLP-SGGDWILFDADGVGHLDVRITLETQDGAYIYVQYYGVAVMNEKVNAALEQGEWTEYGDTYFMTQPRFETGDSRYKWLNAVMAVAEGRIKPGAVEYRVLELVN 150          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A2E7XI10_9GAMM (UPF0311 protein CMQ21_11345 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XI10_9GAMM)

HSP 1 Score: 160 bits (405), Expect = 4.480e-48
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 DGPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGRVEYKVYQCVN 393
            +GP G R+I +VTGG F G KLKGK    + ADW+I D DG+GHLDVR+TL+TDDGA IY+QY+G +V N+ ++ + A     ++G T+F TQPRFETGD RYKWLN+ +AVAEGR +   VEY+VY+  N
Sbjct:   21 EGPSGNRIIFDVTGGHFEGEKLKGKIL-ASGADWIIMDSDGVGHLDVRITLQTDDGANIYVQYYGVLVFNEKISESQAGTRQAEFGDTYFVTQPRFETGDERYKWLNRTMAVAEGRPLKNAVEYQVYEVTN 150          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A524NKK3_9DELT (UPF0311 protein E4H03_04815 n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524NKK3_9DELT)

HSP 1 Score: 159 bits (403), Expect = 8.740e-48
Identity = 79/130 (60.77%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    4 GPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGRVEYKVYQCVN 393
            GPFG R+I EVTGG F G +LKG+F      DW++ D    GHLDVR T++TDDGAIIY+QY G M +N+   AALA G+  D+G T+F TQPRFETGD RY WLN VVAV EGR   G VEY+VY CVN
Sbjct:   22 GPFGARMIFEVTGGTFEGARLKGEFL-AGGGDWMLIDATATGHLDVRGTMKTDDGAIIYVQYPGVMTINEKAQAALAGGS-FDYGDTYFMTQPRFETGDERYAWLNAVVAVGEGRAGAGWVEYRVYACVN 149          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A661BW85_9GAMM (UPF0311 protein DRQ58_00965 n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BW85_9GAMM)

HSP 1 Score: 154 bits (390), Expect = 9.960e-46
Identity = 72/130 (55.38%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    7 PFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGRVEYKVYQCVND 396
            P G R+I+EV GGEF G KL GK R+ + ADW+    +G GHLDVR T ETDDGAIIY+QYFG +     + AALA   D ++G   FFTQPR +TGDPRY W+N ++ V +GR++ G+VEY+V+Q VND
Sbjct:   28 PSGNRLIIEVHGGEFKGEKLNGKLRDASCADWMTVS-EGYGHLDVRATFETDDGAIIYVQYFGVLEFTPGIQAALAGEGDTNFGDQVFFTQPRMQTGDPRYTWVNNILCVGQGRLLPGKVEYQVFQLVND 156          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A2E8K9W7_9GAMM (UPF0311 protein CMQ20_13120 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8K9W7_9GAMM)

HSP 1 Score: 153 bits (386), Expect = 3.790e-45
Identity = 74/133 (55.64%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    4 GPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGR--VEYKVYQCVND 396
            GP G R + EV GG F+G +LKG       ADW++   DGL H+DVR+TL+TDDGA+IY+QY G +V+ND    A  QG D   G T+F TQPRFETG   Y WLN +VAVAEGRV+GG   VEY+VY+C +D
Sbjct:   23 GPLGTRSVTEVMGGSFSGERLKGTVLR-PGADWVLIGADGLIHVDVRITLKTDDGALIYMQYPGKLVLNDKFTEASQQGKDMQLGDTYFMTQPRFETGSDDYAWLNSIVAVAEGRVLGGATGVEYQVYECQHD 154          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A7Y5W251_9CHLR (UPF0311 protein HUU14_10400 n=2 Tax=Bacteria TaxID=2 RepID=A0A7Y5W251_9CHLR)

HSP 1 Score: 152 bits (385), Expect = 4.910e-45
Identity = 76/130 (58.46%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 GPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGRVEYKVYQCVN 393
            GP G R I +V GG   GP+L+GK    +  DWL+   DG+G LDVR T ETDDGA IY+QYFG +VV    A  LA+G   D+G  +F T PRFETGDPRY WLN VVAVAEGR   G VEY+VYQ VN
Sbjct:   22 GPLGVRNIYDVLGGTLEGPRLRGKLLP-SGGDWLLTGPDGVGRLDVRATFETDDGAYIYMQYFGIVVVAGAAAEKLARGEGTDYGDAYFMTSPRFETGDPRYAWLNAVVAVAEGRFGPGWVEYRVYQAVN 150          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: UPI001CA65E79 (DUF3237 domain-containing protein n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA65E79)

HSP 1 Score: 152 bits (385), Expect = 5.220e-45
Identity = 78/134 (58.21%), Postives = 94/134 (70.15%), Query Frame = 1
Query:    1 DGPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQG-TDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGR-VEYKVYQCVND 396
            +GPFG R+IVEVTGG F GPKLKG F      DWL+   DG G LDVR TL+T+DGA IY+QY G + + D + A L  G T   +G  +FFT PRFETGD RY+W+NQ+  V+EGRV+ G  VEY VYQCVND
Sbjct:   21 EGPFGNRMIVEVTGGWFEGPKLKGTFLT-CGGDWLLAHPDGYGRLDVRGTLQTEDGAHIYMQYNGVLQLTDGVMAVLGGGDTPTQYGDQNFFTAPRFETGDERYQWINQIQCVSEGRVVPGPGVEYHVYQCVND 153          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A496WMT6_9GAMM (UPF0311 protein DRR42_26325 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496WMT6_9GAMM)

HSP 1 Score: 151 bits (381), Expect = 1.990e-44
Identity = 68/131 (51.91%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    4 GPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGRVEYKVYQCVND 396
            GP+G+R I +VT G F G KL G     +  DW++ D  G+GHLDVR+TL+TDD A++Y+QY+G + +N  +  A+A G   ++G  +F TQPR ETGD RY+WLN +VAVAEGRV+   VEY+VY+ VND
Sbjct:   22 GPYGQRTIFDVTAGTFKGDKLSGTILP-SGGDWILIDDQGIGHLDVRITLKTDDDALLYVQYYGVLEMNQAVMTAIAGGKPTEFGDIYFMTQPRVETGDERYQWLNNIVAVAEGRVVDSGVEYQVYELVND 151          
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Match: A0A2E0PWY1_9GAMM (UPF0311 protein CMF45_07185 n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E0PWY1_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 5.860e-44
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 DGPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVTLETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGDPRYKWLNQVVAVAEGRVMGGRVEYKVYQCVND 396
            +GPFGKR+  EV GGEF G KL GK R+   ADW+  D  G GHLDVR + ETDDGA IY+QY G + +   +   LA   + D+G+ +FF  PR +TGD RY W+N +  VA+GR++ G+VEY+V+Q VND
Sbjct:   21 NGPFGKRMTFEVHGGEFKGEKLNGKIRDAGCADWMTIDDKGYGHLDVRASFETDDGANIYVQYSGVIELTSEIMGVLAGEGETDFGEQNFFINPRMQTGDERYDWVNNIFCVAQGRLVPGKVEYEVFQLVND 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122427.4626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A258R3Y8_9BURK3.510e-5260.00UPF0311 protein B7Y51_09710 n=1 Tax=Burkholderiale... [more]
A0A7C1SCB5_9DELT2.720e-4958.02UPF0311 protein ENI07_08320 n=2 Tax=root TaxID=1 R... [more]
A0A2E7XI10_9GAMM4.480e-4856.49UPF0311 protein CMQ21_11345 n=1 Tax=Gammaproteobac... [more]
A0A524NKK3_9DELT8.740e-4860.77UPF0311 protein E4H03_04815 n=1 Tax=Myxococcales b... [more]
A0A661BW85_9GAMM9.960e-4655.38UPF0311 protein DRQ58_00965 n=2 Tax=Gammaproteobac... [more]
A0A2E8K9W7_9GAMM3.790e-4555.64UPF0311 protein CMQ20_13120 n=1 Tax=Gammaproteobac... [more]
A0A7Y5W251_9CHLR4.910e-4558.46UPF0311 protein HUU14_10400 n=2 Tax=Bacteria TaxID... [more]
UPI001CA65E795.220e-4558.21DUF3237 domain-containing protein n=1 Tax=Algiphil... [more]
A0A496WMT6_9GAMM1.990e-4451.91UPF0311 protein DRR42_26325 n=1 Tax=Gammaproteobac... [more]
A0A2E0PWY1_9GAMM5.860e-4451.52UPF0311 protein CMF45_07185 n=1 Tax=Legionellales ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122427contigM-pyrifera_M_contig122427:126..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score149.1
Seed ortholog evalue1.5e-33
Seed eggNOG ortholog1415780.JPOG01000001_gene437
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3237)
EggNOG OGs1NC27@1224,1SBA3@1236,1XD1Y@135614,2DMP1@1,32SS8@2
COG Functional cat.S
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.2115302-CDS-M-pyrifera_M_contig122427:125..5241622815744.2115302-CDS-M-pyrifera_M_contig122427:125..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122427 126..524 -
1692277548.833825-CDS-M-pyrifera_M_contig122427:125..5241692277548.833825-CDS-M-pyrifera_M_contig122427:125..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122427 126..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122427.4626.1prot_M-pyrifera_M_contig122427.4626.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122427 126..524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122427.4626.1

>prot_M-pyrifera_M_contig122427.4626.1 ID=prot_M-pyrifera_M_contig122427.4626.1|Name=mRNA_M-pyrifera_M_contig122427.4626.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
DGPFGKRVIVEVTGGEFNGPKLKGKFRNLAAADWLIFDRDGLGHLDVRVT
LETDDGAIIYLQYFGHMVVNDTMAAALAQGTDCDWGQTHFFTQPRFETGD
PRYKWLNQVVAVAEGRVMGGRVEYKVYQCVND*
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mRNA from alignment at M-pyrifera_M_contig122427:126..524-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122427.4626.1 ID=mRNA_M-pyrifera_M_contig122427.4626.1|Name=mRNA_M-pyrifera_M_contig122427.4626.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig122427:126..524- (Macrocystis pyrifera P11B4 male)
GATGGTCCGTTCGGCAAACGGGTGATCGTCGAGGTCACCGGCGGCGAATT CAACGGGCCGAAGCTGAAAGGAAAGTTTCGCAATCTCGCGGCGGCCGACT GGCTCATTTTCGACCGCGATGGTCTCGGCCATCTCGATGTCCGGGTAACG CTGGAAACCGACGACGGCGCGATTATTTATCTGCAGTATTTCGGCCACAT GGTCGTGAACGATACGATGGCCGCGGCGCTGGCGCAGGGGACGGATTGCG ACTGGGGGCAGACGCACTTCTTCACCCAGCCCCGCTTCGAAACCGGCGAT CCGCGGTATAAATGGCTGAACCAGGTCGTTGCCGTCGCCGAGGGCCGGGT GATGGGCGGCCGGGTCGAGTACAAAGTCTATCAATGCGTTAATGACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122427:126..524-

>mRNA_M-pyrifera_M_contig122427.4626.1 ID=mRNA_M-pyrifera_M_contig122427.4626.1|Name=mRNA_M-pyrifera_M_contig122427.4626.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig122427:126..524- (Macrocystis pyrifera P11B4 male)
GATGGTCCGTTCGGCAAACGGGTGATCGTCGAGGTCACCGGCGGCGAATT
CAACGGGCCGAAGCTGAAAGGAAAGTTTCGCAATCTCGCGGCGGCCGACT
GGCTCATTTTCGACCGCGATGGTCTCGGCCATCTCGATGTCCGGGTAACG
CTGGAAACCGACGACGGCGCGATTATTTATCTGCAGTATTTCGGCCACAT
GGTCGTGAACGATACGATGGCCGCGGCGCTGGCGCAGGGGACGGATTGCG
ACTGGGGGCAGACGCACTTCTTCACCCAGCCCCGCTTCGAAACCGGCGAT
CCGCGGTATAAATGGCTGAACCAGGTCGTTGCCGTCGCCGAGGGCCGGGT
GATGGGCGGCCGGGTCGAGTACAAAGTCTATCAATGCGTTAATGACTAGG
ATGGTCCGTTCGGCAAACGGGTGATCGTCGAGGTCACCGGCGGCGAATTC
AACGGGCCGAAGCTGAAAGGAAAGTTTCGCAATCTCGCGGCGGCCGACTG
GCTCATTTTCGACCGCGATGGTCTCGGCCATCTCGATGTCCGGGTAACGC
TGGAAACCGACGACGGCGCGATTATTTATCTGCAGTATTTCGGCCACATG
GTCGTGAACGATACGATGGCCGCGGCGCTGGCGCAGGGGACGGATTGCGA
CTGGGGGCAGACGCACTTCTTCACCCAGCCCCGCTTCGAAACCGGCGATC
CGCGGTATAAATGGCTGAACCAGGTCGTTGCCGTCGCCGAGGGCCGGGTG
ATGGGCGGCCGGGTCGAGTACAAAGTCTATCAATGCGTTAATGACTAG
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