mRNA_M-pyrifera_M_contig1224.4620.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1224.4620.1
Unique NamemRNA_M-pyrifera_M_contig1224.4620.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1224.4620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1224contigM-pyrifera_M_contig1224:19786..20607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size822
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.9763217-UTR-M-pyrifera_M_contig1224:19785..201691622815743.9763217-UTR-M-pyrifera_M_contig1224:19785..20169Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1224 19786..20169 +
1692277548.7283938-UTR-M-pyrifera_M_contig1224:19785..201691692277548.7283938-UTR-M-pyrifera_M_contig1224:19785..20169Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1224 19786..20169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.9916036-CDS-M-pyrifera_M_contig1224:20169..206071622815743.9916036-CDS-M-pyrifera_M_contig1224:20169..20607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 20170..20607 +
1692277548.7368412-CDS-M-pyrifera_M_contig1224:20169..206071692277548.7368412-CDS-M-pyrifera_M_contig1224:20169..20607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 20170..20607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1224.4620.1prot_M-pyrifera_M_contig1224.4620.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1224 20170..20607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1224.4620.1

>prot_M-pyrifera_M_contig1224.4620.1 ID=prot_M-pyrifera_M_contig1224.4620.1|Name=mRNA_M-pyrifera_M_contig1224.4620.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MNIIVDTPVFTRETCFFSFSLLTKGRREKRIYLYRYPFATPDGSFARKRI
LRSDEGMVQEFSLMAKTTLDAITARGVVEFGVYCQLPRVYNDANRKTVGG
FFNKERRRCARFLCWSTFVEGKDLGQATGKKRQNIYLVWYHGVIKG
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mRNA from alignment at M-pyrifera_M_contig1224:19786..20607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1224.4620.1 ID=mRNA_M-pyrifera_M_contig1224.4620.1|Name=mRNA_M-pyrifera_M_contig1224.4620.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig1224:19786..20607+ (Macrocystis pyrifera P11B4 male)
AGCATGGAGCGGGGCGGTAGGAGAGCCGCCAAGGAAGAATGCGGCGTTTG
GAGAGGCGCCACAGCGGCTCTGCCAGACCTGCCTCGGCAACGGCGTGTCT
CGCAGCTTCCTCGCGGAGAAGGCTCACAAGAGGAAGAGCCAACATTGCGA
GGAGGTCCAGAGGGCGTGGGATGAGCAGGGCGAGAACGGAGCGTAATTTT
CCGTATTAGGCCCGTGCGCCACAAAATATGTCGGACTTTGATGATATGGA
GGAAGACAAAGTGTTTCAGAGCTCGGTTTGTAGCTACGCATCAAGCCCGC
TTTAGATTTTAACGGCCGACGCATCAAGCCCGCTTTAGATTTTAACGGCC
GAGGTATTCGGTTGGCCTAAAAGTCATTGACACAATGAATATAATAGTAG
ATACGCCAGTTTTTACTCGAGAAACTTGTTTTTTTAGCTTTTCGTTGTTG
ACAAAAGGCAGAAGAGAGAAACGTATATATTTATACCGGTATCCGTTTGC
TACACCTGACGGATCGTTTGCGCGAAAACGTATACTACGGAGTGACGAAG
GTATGGTTCAAGAATTCAGCCTGATGGCTAAAACCACTCTAGACGCGATC
ACCGCACGCGGTGTAGTGGAGTTTGGCGTATATTGTCAGCTCCCCCGAGT
GTATAATGATGCAAACAGGAAAACTGTTGGGGGGTTTTTCAACAAAGAGA
GAAGAAGGTGCGCGCGTTTTCTTTGTTGGTCGACTTTTGTTGAAGGGAAG
GATTTGGGCCAGGCGACCGGTAAAAAACGTCAAAATATATACCTGGTCTG
GTACCATGGTGTGATAAAAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1224:19786..20607+

>mRNA_M-pyrifera_M_contig1224.4620.1 ID=mRNA_M-pyrifera_M_contig1224.4620.1|Name=mRNA_M-pyrifera_M_contig1224.4620.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig1224:19786..20607+ (Macrocystis pyrifera P11B4 male)
ATGAATATAATAGTAGATACGCCAGTTTTTACTCGAGAAACTTGTTTTTT
TAGCTTTTCGTTGTTGACAAAAGGCAGAAGAGAGAAACGTATATATTTAT
ACCGGTATCCGTTTGCTACACCTGACGGATCGTTTGCGCGAAAACGTATA
CTACGGAGTGACGAAGGTATGGTTCAAGAATTCAGCCTGATGGCTAAAAC
CACTCTAGACGCGATCACCGCACGCGGTGTAGTGGAGTTTGGCGTATATT
GTCAGCTCCCCCGAGTGTATAATGATGCAAACAGGAAAACTGTTGGGGGG
TTTTTCAACAAAGAGAGAAGAAGGTGCGCGCGTTTTCTTTGTTGGTCGAC
TTTTGTTGAAGGGAAGGATTTGGGCCAGGCGACCGGTAAAAAACGTCAAA
ATATATACCTGGTCTGGTACCATGGTGTGATAAAAGGGATGAATATAATA
GTAGATACGCCAGTTTTTACTCGAGAAACTTGTTTTTTTAGCTTTTCGTT
GTTGACAAAAGGCAGAAGAGAGAAACGTATATATTTATACCGGTATCCGT
TTGCTACACCTGACGGATCGTTTGCGCGAAAACGTATACTACGGAGTGAC
GAAGGTATGGTTCAAGAATTCAGCCTGATGGCTAAAACCACTCTAGACGC
GATCACCGCACGCGGTGTAGTGGAGTTTGGCGTATATTGTCAGCTCCCCC
GAGTGTATAATGATGCAAACAGGAAAACTGTTGGGGGGTTTTTCAACAAA
GAGAGAAGAAGGTGCGCGCGTTTTCTTTGTTGGTCGACTTTTGTTGAAGG
GAAGGATTTGGGCCAGGCGACCGGTAAAAAACGTCAAAATATATACCTGG
TCTGGTACCATGGTGTGATAAAAGGG
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