mRNA_M-pyrifera_M_contig122391.4618.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122391.4618.1
Unique NamemRNA_M-pyrifera_M_contig122391.4618.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122391.4618.1 vs. uniprot
Match: A0A7X8AMN5_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X8AMN5_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 7.590e-9
Identity = 53/178 (29.78%), Postives = 80/178 (44.94%), Query Frame = 1 
Query:    1 WTGDNSELSIMEMIVIGFADARLVTEAAIVALN--APSSIRDELVAQPQIAEILAYRKFFESVEQHMIRHYRLAARRENSTSSYWEGFDNAIADLWPNLDDATSSVPKYSGNETSLSKTLERELNPRFGTVVRFVEIDGYRGLQMGHIVKDEWQEIEQYGKSATVRFVLLDSMVSNGF 528
            W G  +  +    +V   A+ R   EAA+VAL+  A +S+R+    +P    I AY +   +V +    HYR           +        A +   L       P  +  E      ++  L+  FGT +      GY  L +GH V DE + ++QY   A++RFV+LDSMVSNGF
Sbjct:  245 WPGAGATPADRIELVRALAEGRFFAEAALVALDPRADASVRESATVRP----IEAYARGLVAVRRLAEEHYRQTILGGGDPDEFARQIGAQAAPVLAAL--GVDRQPPPTNAE------VDALLDQHFGTYIAVGWTAGYYDLHLGHRVLDETRVVKQYSHEASLRFVVLDSMVSNGF 410
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122391.4618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X8AMN5_9BACT7.590e-929.78Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122391contigM-pyrifera_M_contig122391:1..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size498
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.833067-UTR-M-pyrifera_M_contig122391:0..301622815743.833067-UTR-M-pyrifera_M_contig122391:0..30Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122391 1..30 +
1692277548.6580162-UTR-M-pyrifera_M_contig122391:0..301692277548.6580162-UTR-M-pyrifera_M_contig122391:0..30Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122391 1..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.846276-CDS-M-pyrifera_M_contig122391:30..5281622815743.846276-CDS-M-pyrifera_M_contig122391:30..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122391 31..528 +
1692277548.6679592-CDS-M-pyrifera_M_contig122391:30..5281692277548.6679592-CDS-M-pyrifera_M_contig122391:30..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122391 31..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122391.4618.1prot_M-pyrifera_M_contig122391.4618.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122391 31..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122391.4618.1

>prot_M-pyrifera_M_contig122391.4618.1 ID=prot_M-pyrifera_M_contig122391.4618.1|Name=mRNA_M-pyrifera_M_contig122391.4618.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
MEMIVIGFADARLVTEAAIVALNAPSSIRDELVAQPQIAEILAYRKFFES
VEQHMIRHYRLAARRENSTSSYWEGFDNAIADLWPNLDDATSSVPKYSGN
ETSLSKTLERELNPRFGTVVRFVEIDGYRGLQMGHIVKDEWQEIEQYGKS
ATVRFVLLDSMVSNGF
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mRNA from alignment at M-pyrifera_M_contig122391:1..528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122391.4618.1 ID=mRNA_M-pyrifera_M_contig122391.4618.1|Name=mRNA_M-pyrifera_M_contig122391.4618.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig122391:1..528+ (Macrocystis pyrifera P11B4 male)
TGGACAGGCGACAACTCAGAGCTATCGATAATGGAGATGATTGTTATAGG
TTTCGCCGATGCACGCCTTGTCACCGAAGCAGCAATTGTCGCGCTGAATG
CACCGTCTTCGATTCGAGATGAACTCGTTGCACAACCTCAAATCGCTGAG
ATTCTCGCTTATAGAAAGTTTTTTGAATCCGTCGAACAACACATGATTCG
CCACTACCGACTTGCAGCACGAAGGGAGAACTCGACTTCTTCCTACTGGG
AGGGCTTTGACAACGCCATTGCTGACCTCTGGCCGAATCTCGACGATGCA
ACTTCGTCCGTTCCTAAGTACAGCGGGAATGAAACCTCTCTCTCCAAAAC
CCTTGAGCGAGAGTTGAACCCACGTTTCGGCACGGTTGTGCGTTTTGTAG
AAATCGACGGATACCGTGGATTGCAGATGGGCCATATCGTCAAAGACGAG
TGGCAAGAAATTGAACAATATGGGAAGTCGGCAACGGTCCGATTTGTCTT
GCTCGATTCGATGGTATCCAATGGCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122391:1..528+

>mRNA_M-pyrifera_M_contig122391.4618.1 ID=mRNA_M-pyrifera_M_contig122391.4618.1|Name=mRNA_M-pyrifera_M_contig122391.4618.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig122391:1..528+ (Macrocystis pyrifera P11B4 male)
ATGGAGATGATTGTTATAGGTTTCGCCGATGCACGCCTTGTCACCGAAGC
AGCAATTGTCGCGCTGAATGCACCGTCTTCGATTCGAGATGAACTCGTTG
CACAACCTCAAATCGCTGAGATTCTCGCTTATAGAAAGTTTTTTGAATCC
GTCGAACAACACATGATTCGCCACTACCGACTTGCAGCACGAAGGGAGAA
CTCGACTTCTTCCTACTGGGAGGGCTTTGACAACGCCATTGCTGACCTCT
GGCCGAATCTCGACGATGCAACTTCGTCCGTTCCTAAGTACAGCGGGAAT
GAAACCTCTCTCTCCAAAACCCTTGAGCGAGAGTTGAACCCACGTTTCGG
CACGGTTGTGCGTTTTGTAGAAATCGACGGATACCGTGGATTGCAGATGG
GCCATATCGTCAAAGACGAGTGGCAAGAAATTGAACAATATGGGAAGTCG
GCAACGGTCCGATTTGTCTTGCTCGATTCGATGGTATCCAATGGCTTCAT
GGAGATGATTGTTATAGGTTTCGCCGATGCACGCCTTGTCACCGAAGCAG
CAATTGTCGCGCTGAATGCACCGTCTTCGATTCGAGATGAACTCGTTGCA
CAACCTCAAATCGCTGAGATTCTCGCTTATAGAAAGTTTTTTGAATCCGT
CGAACAACACATGATTCGCCACTACCGACTTGCAGCACGAAGGGAGAACT
CGACTTCTTCCTACTGGGAGGGCTTTGACAACGCCATTGCTGACCTCTGG
CCGAATCTCGACGATGCAACTTCGTCCGTTCCTAAGTACAGCGGGAATGA
AACCTCTCTCTCCAAAACCCTTGAGCGAGAGTTGAACCCACGTTTCGGCA
CGGTTGTGCGTTTTGTAGAAATCGACGGATACCGTGGATTGCAGATGGGC
CATATCGTCAAAGACGAGTGGCAAGAAATTGAACAATATGGGAAGTCGGC
AACGGTCCGATTTGTCTTGCTCGATTCGATGGTATCCAATGGCTTC
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