mRNA_M-pyrifera_M_contig122383.4614.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122383.4614.1
Unique NamemRNA_M-pyrifera_M_contig122383.4614.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122383.4614.1 vs. uniprot
Match: F2U931_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U931_SALR5)

HSP 1 Score: 95.9 bits (237), Expect = 6.000e-23
Identity = 40/63 (63.49%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    4 VFEKSQFSCDQYPPSGQVLFWDIMMRYDNEMVSPSWTTGYVDDNCNNRAHVVNETSIEITWNT 192
            VFEK ++ CDQYPP G+V F+DI ++Y+N+ VSP WTT YVDD CNNRAH+V+E++I+ITW+T
Sbjct:  164 VFEK-EWDCDQYPPDGEVTFYDIKVQYNNQTVSPQWTTAYVDDVCNNRAHIVDESTIKITWDT 225          
BLAST of mRNA_M-pyrifera_M_contig122383.4614.1 vs. uniprot
Match: A0A6B2LHB7_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LHB7_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 1.390e-22
Identity = 39/64 (60.94%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    4 VFEKSQFSCDQYPPSGQVLFWDIMMRYDNEMVSPSWTTGYVDDNCNNRAHVVNETSIEITWNTN 195
            V EKS++ C+QYPP G+V+F+DI + YD + V+P+W+TG VDDNCN RA V++ TSI+ITWNTN
Sbjct:  155 VMEKSEWDCNQYPPDGKVVFYDIKVEYDGKQVTPNWSTGIVDDNCNCRASVLSPTSIQITWNTN 218          
BLAST of mRNA_M-pyrifera_M_contig122383.4614.1 vs. uniprot
Match: A9UPB6_MONBE (Uncharacterized protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UPB6_MONBE)

HSP 1 Score: 94.0 bits (232), Expect = 3.280e-22
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    4 VFEKSQFSCDQYPPSGQVLFWDIMMRYDNEMVSPSWTTGYVDDNCNNRAHVVNETSIEITWNT 192
            VFEK+ F+C QYP    V F+DI ++YDN+ V+P+WTT YVDDNCNNRAH++NET+I ITW+T
Sbjct:  163 VFEKT-FACHQYPAEEVVTFYDIAVQYDNQTVAPTWTTAYVDDNCNNRAHILNETTISITWDT 224          
BLAST of mRNA_M-pyrifera_M_contig122383.4614.1 vs. uniprot
Match: A0A5A8EES0_CAFRO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8EES0_CAFRO)

HSP 1 Score: 92.4 bits (228), Expect = 2.300e-21
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    4 VFEKSQFSCDQYPPSGQVLFWDIMMRYDNEMVSPSWTTGYVDDNCNNRAHVVNETSIEITWNT 192
            V EKSQ+ C QYPP+ QV F DI + YD   V P WTT +VDDNCN RAH+ NETSI+ITW++
Sbjct:  165 VMEKSQWQCAQYPPNNQVTFTDIKVEYDGAAVQPKWTTAFVDDNCNCRAHITNETSIQITWDS 227          
BLAST of mRNA_M-pyrifera_M_contig122383.4614.1 vs. uniprot
Match: X6NA07_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NA07_RETFI)

HSP 1 Score: 82.8 bits (203), Expect = 1.740e-17
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    4 VFEKSQFSCDQYPPSGQVLFWDIMMRYDNEMVSPSWTTGYVDDNCNNRAHVVNETSIEITW 186
            VFEK +  CDQYPP+ +V F++I + Y+N  VSP WTT YVDD CNNRA VV+E +I+ITW
Sbjct:  182 VFEK-EARCDQYPPNDEVTFYNISIFYNNNKVSPQWTTAYVDDVCNNRAQVVDEATIKITW 241          
BLAST of mRNA_M-pyrifera_M_contig122383.4614.1 vs. uniprot
Match: A0A0L0DRT5_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DRT5_THETB)

HSP 1 Score: 79.0 bits (193), Expect = 2.020e-16
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 VVFEKSQFSCDQYPPSGQVLFWDIMMRYDNEMVSPSWTTGYVDDNCNNRAHVVNETSIEITWN 189
            VV+EK    C Q P SG+VLF+DI + +D ++V+P WTT +V D C+NRA +VN TS+ +TWN
Sbjct:  163 VVYEKVPIVCGQLPASGKVLFFDIEIEFDGKLVTPEWTTAFVVDKCDNRAQLVNSTSVLLTWN 225          
BLAST of mRNA_M-pyrifera_M_contig122383.4614.1 vs. uniprot
Match: A0A7S1YFL5_9EUKA (Hypothetical protein n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1YFL5_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.790e-13
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 VVFEKSQFSCDQYPPSGQVLFWDIMMRYDNEMV-SPSWTTGYVDDNCNNRAHVVNETSIEITW 186
            +V EK  + CDQY   GQV F+DI +  D + + SP W T YV+DNCNNRA V+N ++I+ITW
Sbjct:  157 LVMEKV-WDCDQYSTDGQVTFFDIAVEIDGKPIDSPKWITSYVEDNCNNRAKVLNSSAIQITW 218          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122383.4614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
F2U931_SALR56.000e-2363.49Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A6B2LHB7_9EUKA1.390e-2260.94Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A9UPB6_MONBE3.280e-2263.49Uncharacterized protein n=1 Tax=Monosiga brevicoll... [more]
A0A5A8EES0_CAFRO2.300e-2161.90Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
X6NA07_RETFI1.740e-1760.66Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A0L0DRT5_THETB2.020e-1652.38Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S1YFL5_9EUKA1.790e-1352.38Hypothetical protein n=1 Tax=Sexangularia sp. CB-2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122383contigM-pyrifera_M_contig122383:92..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog946362.XP_004994265.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C6K2@1,2S30E@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.6776333-CDS-M-pyrifera_M_contig122383:91..2891622815743.6776333-CDS-M-pyrifera_M_contig122383:91..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122383 92..289 +
1692277548.5974867-CDS-M-pyrifera_M_contig122383:91..2891692277548.5974867-CDS-M-pyrifera_M_contig122383:91..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122383 92..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122383.4614.1prot_M-pyrifera_M_contig122383.4614.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122383 92..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122383.4614.1

>prot_M-pyrifera_M_contig122383.4614.1 ID=prot_M-pyrifera_M_contig122383.4614.1|Name=mRNA_M-pyrifera_M_contig122383.4614.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
VVFEKSQFSCDQYPPSGQVLFWDIMMRYDNEMVSPSWTTGYVDDNCNNRA
HVVNETSIEITWNTN*
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mRNA from alignment at M-pyrifera_M_contig122383:92..289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122383.4614.1 ID=mRNA_M-pyrifera_M_contig122383.4614.1|Name=mRNA_M-pyrifera_M_contig122383.4614.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig122383:92..289+ (Macrocystis pyrifera P11B4 male)
GTGGTGTTCGAAAAGTCTCAATTTAGCTGTGACCAGTACCCTCCATCTGG ACAAGTTTTGTTCTGGGACATTATGATGCGTTACGACAACGAAATGGTGT CTCCATCATGGACCACTGGCTACGTGGACGACAACTGCAACAACCGCGCT CATGTCGTCAACGAAACCTCCATCGAAATCACCTGGAACACCAACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122383:92..289+

>mRNA_M-pyrifera_M_contig122383.4614.1 ID=mRNA_M-pyrifera_M_contig122383.4614.1|Name=mRNA_M-pyrifera_M_contig122383.4614.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig122383:92..289+ (Macrocystis pyrifera P11B4 male)
GTGGTGTTCGAAAAGTCTCAATTTAGCTGTGACCAGTACCCTCCATCTGG
ACAAGTTTTGTTCTGGGACATTATGATGCGTTACGACAACGAAATGGTGT
CTCCATCATGGACCACTGGCTACGTGGACGACAACTGCAACAACCGCGCT
CATGTCGTCAACGAAACCTCCATCGAAATCACCTGGAACACCAACTAAGT
GGTGTTCGAAAAGTCTCAATTTAGCTGTGACCAGTACCCTCCATCTGGAC
AAGTTTTGTTCTGGGACATTATGATGCGTTACGACAACGAAATGGTGTCT
CCATCATGGACCACTGGCTACGTGGACGACAACTGCAACAACCGCGCTCA
TGTCGTCAACGAAACCTCCATCGAAATCACCTGGAACACCAACTAA
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