mRNA_M-pyrifera_M_contig122323.4599.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122323.4599.1
Unique NamemRNA_M-pyrifera_M_contig122323.4599.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: A0A6A6LX16_HEVBR (DIOX_N domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LX16_HEVBR)

HSP 1 Score: 105 bits (263), Expect = 4.800e-27
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIYG 282
            +D  S + FGWS G E L+  K  PDL+KG F+ANP LDVPTTD  L+  +P  C +N+WP  +LP L+ AF+ALG  ++DVGL+VA  CD YG
Sbjct:   59 EDPNSRYNFGWSHGKETLESGK--PDLFKGSFYANPVLDVPTTDVYLIQRYPHYCGSNIWPVNSLPELEVAFKALGKLILDVGLMVAYHCDQYG 150
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BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: A0A2P2KNY6_RHIMU (Uncharacterized protein MANES_16G065500 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KNY6_RHIMU)

HSP 1 Score: 107 bits (266), Expect = 1.280e-26
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIYG 282
            +D  S + FGWS G E L+  K  PD+ KG F+ANP LD+PTTDA L+  +P+ C +N+WP  ALP L+ AF+ALG  ++DVGL+VA  CD YG
Sbjct:  112 EDPGSRYNFGWSHGKEKLESGK--PDMLKGSFYANPVLDMPTTDAYLIERYPSYCGSNIWPQRALPDLEPAFKALGKLILDVGLMVAYHCDQYG 203
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BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: UPI000D6295C5 (uncharacterized protein LOC112501608 isoform X1 n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D6295C5)

HSP 1 Score: 107 bits (267), Expect = 7.150e-26
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIY 279
            +D +S + FGWS GNE L+  K  PDL KG F+ANP LD+PTT+A+L+  +P  C +N+WP + +P L+ AF+ALG  ++DVGLLVA  CD Y
Sbjct:   81 EDPQSRYNFGWSHGNEKLESGK--PDLLKGSFYANPILDIPTTEASLIQRYPAYCGSNIWPQSTMPELEVAFKALGKLILDVGLLVAYHCDKY 171
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BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: A0A2J6JFW9_LACSA (Fe2OG dioxygenase domain-containing protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6JFW9_LACSA)

HSP 1 Score: 107 bits (267), Expect = 8.210e-26
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIY 279
            +D +S + FGWS G E L+  K  PDL KG F+ANP LDVPTTDA L+  +P  C +N+WP  ALP L+ AF+ALG  ++DVGLLVA  CD Y
Sbjct:   81 EDPQSRYNFGWSHGKEKLESGK--PDLLKGSFYANPLLDVPTTDALLLQRYPAYCGSNIWPQTALPELEVAFKALGKLILDVGLLVAYHCDKY 171
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BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: UPI000B79AEDF (uncharacterized protein LOC110654430 isoform X2 n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B79AEDF)

HSP 1 Score: 103 bits (257), Expect = 1.500e-25
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIY 279
            +D  S + FGWS G E L+  K  PDL+KG F+ANP LDVPTTD  L+  +P  C +N+WP  +LP L+ AF+ALG  ++DVGL+VA  CD Y
Sbjct:   80 EDPNSRYNFGWSHGKETLESGK--PDLFKGSFYANPVLDVPTTDVYLIQRYPHYCGSNIWPVNSLPELEVAFKALGKLILDVGLMVAYHCDQY 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: UPI000B77F2F9 (uncharacterized protein LOC110654430 isoform X1 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B77F2F9)

HSP 1 Score: 103 bits (257), Expect = 1.580e-25
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIY 279
            +D  S + FGWS G E L+  K  PDL+KG F+ANP LDVPTTD  L+  +P  C +N+WP  +LP L+ AF+ALG  ++DVGL+VA  CD Y
Sbjct:   80 EDPNSRYNFGWSHGKETLESGK--PDLFKGSFYANPVLDVPTTDVYLIQRYPHYCGSNIWPVNSLPELEVAFKALGKLILDVGLMVAYHCDQY 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: A0A6J1DUW6_MOMCH (uncharacterized protein LOC111024250 isoform X1 n=7 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1DUW6_MOMCH)

HSP 1 Score: 106 bits (264), Expect = 1.980e-25
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIYGA 285
            +D  S + FGWS G E L+  K  PDL KG F+ANPTLD PTTDA+L+  +P+ C +N+WPS  LP L+ AF+ALG  ++DVGL++A  CD Y +
Sbjct:   79 EDPHSRYNFGWSHGKEKLESGK--PDLLKGSFYANPTLDSPTTDASLIKRYPSYCGSNIWPSRELPELELAFKALGKLILDVGLMLAYHCDQYAS 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: A0A2C9U9D9_MANES (DIOX_N domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9U9D9_MANES)

HSP 1 Score: 103 bits (257), Expect = 2.760e-25
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIY 279
            +D  S + +GWS G E L+  K  PDL+KG F+ANP LDVPTTDA L+  +P  C +N+WP  +LP L+ AF+ALG  ++DVGL+VA  CD Y
Sbjct:  117 EDPNSRYNYGWSHGKEMLESGK--PDLFKGSFYANPVLDVPTTDAYLMHRYPHFCGSNIWPVNSLPELEVAFKALGKLILDVGLMVAYHCDKY 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: A0A1R3IE08_COCAP (Fe2OG dioxygenase domain-containing protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3IE08_COCAP)

HSP 1 Score: 105 bits (263), Expect = 2.760e-25
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIY 279
            +D  S +  GWS G E L+  K  PDL KG F+ANP +DVPTTDA L+  +P  C AN+WP AALP L+ AF+ALG  +VDVG++VA  CD Y
Sbjct:   79 EDPRSRYNIGWSHGKEQLESGK--PDLLKGSFYANPLIDVPTTDAYLIERYPAKCGANIWPQAALPELEVAFKALGKLIVDVGMMVAYHCDQY 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Match: A0A2R6Q4Q7_ACTCC (Iron/ascorbate oxidoreductase n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6Q4Q7_ACTCC)

HSP 1 Score: 105 bits (262), Expect = 4.020e-25
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAAHPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIY 279
            +D  S + FGWS G E L+  K  PD+ KG F+ANP LD+PTTDA+LV  +P+ C +N+WP  ALP L+ AF+ALG  +++VGL++A  CD+Y
Sbjct:   79 EDPNSRYNFGWSHGKEKLESGK--PDILKGSFYANPILDIPTTDASLVQRYPSYCGSNIWPDKALPELELAFKALGKLILNVGLMLAYHCDLY 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122323.4599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6LX16_HEVBR4.800e-2753.19DIOX_N domain-containing protein n=1 Tax=Hevea bra... [more]
A0A2P2KNY6_RHIMU1.280e-2653.19Uncharacterized protein MANES_16G065500 n=1 Tax=Rh... [more]
UPI000D6295C57.150e-2652.69uncharacterized protein LOC112501608 isoform X1 n=... [more]
A0A2J6JFW9_LACSA8.210e-2655.91Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
UPI000B79AEDF1.500e-2552.69uncharacterized protein LOC110654430 isoform X2 n=... [more]
UPI000B77F2F91.580e-2552.69uncharacterized protein LOC110654430 isoform X1 n=... [more]
A0A6J1DUW6_MOMCH1.980e-2552.63uncharacterized protein LOC111024250 isoform X1 n=... [more]
A0A2C9U9D9_MANES2.760e-2552.69DIOX_N domain-containing protein n=1 Tax=Manihot e... [more]
A0A1R3IE08_COCAP2.760e-2554.84Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A2R6Q4Q7_ACTCC4.020e-2551.61Iron/ascorbate oxidoreductase n=1 Tax=Actinidia ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122323contigM-pyrifera_M_contig122323:175..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.1
Seed ortholog evalue4.7e-21
Seed eggNOG ortholog3659.XP_004166090.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGs28J4J@1,2QRGK@2759,37IGK@33090,3GBI5@35493,4JS08@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.0378108-CDS-M-pyrifera_M_contig122323:174..4591622815743.0378108-CDS-M-pyrifera_M_contig122323:174..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122323 175..459 -
1692277548.3375742-CDS-M-pyrifera_M_contig122323:174..4591692277548.3375742-CDS-M-pyrifera_M_contig122323:174..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122323 175..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122323.4599.1prot_M-pyrifera_M_contig122323.4599.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122323 175..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122323.4599.1

>prot_M-pyrifera_M_contig122323.4599.1 ID=prot_M-pyrifera_M_contig122323.4599.1|Name=mRNA_M-pyrifera_M_contig122323.4599.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
QDAESFFQFGWSQGNEFLDKEKRMPDLYKGGFFANPTLDVPTTDAALVAA
HPTCCHANVWPSAALPGLKSAFQALGACVVDVGLLVAQLCDIYGA
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mRNA from alignment at M-pyrifera_M_contig122323:175..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122323.4599.1 ID=mRNA_M-pyrifera_M_contig122323.4599.1|Name=mRNA_M-pyrifera_M_contig122323.4599.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig122323:175..459- (Macrocystis pyrifera P11B4 male)
CAGGACGCGGAGAGCTTCTTCCAGTTCGGCTGGAGCCAGGGCAACGAGTT
CCTCGACAAGGAGAAGCGCATGCCTGACCTCTACAAGGGCGGCTTCTTCG
CAAACCCCACCCTCGACGTGCCCACCACCGACGCGGCGCTCGTGGCGGCG
CACCCCACGTGCTGCCACGCCAACGTGTGGCCCTCTGCTGCCCTGCCGGG
CCTCAAGTCCGCATTCCAGGCGCTGGGCGCGTGCGTCGTGGACGTCGGCC
TTCTCGTGGCACAGCTGTGCGACATCTACGGTGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122323:175..459-

>mRNA_M-pyrifera_M_contig122323.4599.1 ID=mRNA_M-pyrifera_M_contig122323.4599.1|Name=mRNA_M-pyrifera_M_contig122323.4599.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig122323:175..459- (Macrocystis pyrifera P11B4 male)
CAGGACGCGGAGAGCTTCTTCCAGTTCGGCTGGAGCCAGGGCAACGAGTT
CCTCGACAAGGAGAAGCGCATGCCTGACCTCTACAAGGGCGGCTTCTTCG
CAAACCCCACCCTCGACGTGCCCACCACCGACGCGGCGCTCGTGGCGGCG
CACCCCACGTGCTGCCACGCCAACGTGTGGCCCTCTGCTGCCCTGCCGGG
CCTCAAGTCCGCATTCCAGGCGCTGGGCGCGTGCGTCGTGGACGTCGGCC
TTCTCGTGGCACAGCTGTGCGACATCTACGGTGCGCAGGACGCGGAGAGC
TTCTTCCAGTTCGGCTGGAGCCAGGGCAACGAGTTCCTCGACAAGGAGAA
GCGCATGCCTGACCTCTACAAGGGCGGCTTCTTCGCAAACCCCACCCTCG
ACGTGCCCACCACCGACGCGGCGCTCGTGGCGGCGCACCCCACGTGCTGC
CACGCCAACGTGTGGCCCTCTGCTGCCCTGCCGGGCCTCAAGTCCGCATT
CCAGGCGCTGGGCGCGTGCGTCGTGGACGTCGGCCTTCTCGTGGCACAGC
TGTGCGACATCTACGGTGCG
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