mRNA_M-pyrifera_M_contig122321.4598.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122321.4598.1
Unique NamemRNA_M-pyrifera_M_contig122321.4598.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A1D1VQ92_RAMVA (GOLD domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VQ92_RAMVA)

HSP 1 Score: 67.8 bits (164), Expect = 2.850e-12
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            Q++ PD + IY+G RE  G+Y F TH+ G Y+ CFSNKMST+T KTV   +++G
Sbjct:   60 QISGPDGKAIYSGERETNGKYTFATHMDGAYQYCFSNKMSTLTTKTVMFTMDLG 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A7S4M5X4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M5X4_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 4.970e-12
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   43 VTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            VT P + ++Y  + +K G+YFFV H+KG Y+ CFSN+MSTVT K V++ + IG
Sbjct:   64 VTGPGDDVLYGAKGDKYGKYFFVAHIKGTYKFCFSNQMSTVTTKKVDVTMQIG 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A6A1Q3X1_BALPH (GOLD domain-containing protein n=2 Tax=Balaenoptera TaxID=9766 RepID=A0A6A1Q3X1_BALPH)

HSP 1 Score: 65.5 bits (158), Expect = 2.160e-11
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            ++T PDN+ IY G RE +G+Y F  H+ G ++ CFSN+MST+T KTV   ++IG
Sbjct:   60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTHKSCFSNRMSTMTPKTVMFTIDIG 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A8J5D472_9CHEL (Transmembrane emp24 domain-containing protein n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5D472_9CHEL)

HSP 1 Score: 66.6 bits (161), Expect = 2.970e-11
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            ++TAPD ++IY G +E +G+Y F  H+ G Y  CFSN MST+TAKTV   + IG
Sbjct:  310 KITAPDGKIIYQGNKETSGKYTFAAHMDGEYHYCFSNSMSTLTAKTVMFTVEIG 363
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A8J5BJM7_9DIPT (GOLD domain-containing protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5BJM7_9DIPT)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-10
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            ++T PD   IY G RE +G+Y F  H  G Y  CFSNKMSTVT KTV   + IG
Sbjct:   61 RITGPDGASIYQGERESSGKYAFAAHNTGIYTYCFSNKMSTVTPKTVMFTVEIG 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: UPI0018849104 (transmembrane emp24 domain-containing protein 2-like n=1 Tax=Peromyscus leucopus TaxID=10041 RepID=UPI0018849104)

HSP 1 Score: 63.2 bits (152), Expect = 1.500e-10
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            ++T PDN+ IY G RE +G+Y F  H+ G Y++CFSN+MST+T K V   +  G
Sbjct:   57 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKLCFSNRMSTMTPKIVMFTIATG 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A1W0WES3_HYPDU (Transmembrane emp24 domain-containing protein n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WES3_HYPDU)

HSP 1 Score: 63.5 bits (153), Expect = 3.320e-10
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            Q++ PD ++IY+G RE  G+Y F T   G Y+ CFSNKMST+T KT+   ++IG
Sbjct:   69 QISGPDGKVIYSGERETNGKYTFATTSDGVYQYCFSNKMSTLTTKTIMFTMDIG 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A6J8C220_MYTCO (TMED2 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8C220_MYTCO)

HSP 1 Score: 59.7 bits (143), Expect = 3.280e-9
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            ++  PD ++++ G RE  G+Y F  H+ G Y+ CFSNKMST+T KTV   +++G
Sbjct:   63 KIYGPDGKVLHQGERESNGKYTFAAHMDGMYKYCFSNKMSTMTPKTVMFSMDLG 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A815DC48_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815DC48_ADIRI)

HSP 1 Score: 58.2 bits (139), Expect = 8.820e-9
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNI 198
            ++T PD + +Y G RE +G+  F  H+ G Y +CF+NKMST+T KT+   +N+
Sbjct:   62 KITGPDQKDVYHGERESSGKTTFSAHMDGNYTLCFNNKMSTMTPKTIMFSMNV 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Match: A0A817NSB2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817NSB2_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 1.090e-8
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   40 QVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSNKMSTVTAKTVNMVLNIG 201
            ++T PD + IY G RE +G+  F  H+ G Y++CFSN+MST+T K V   +++G
Sbjct:   62 KITGPDQKEIYRGDRESSGKTTFSAHMDGIYKLCFSNRMSTMTPKMVMFEMDVG 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122321.4598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D1VQ92_RAMVA2.850e-1251.85GOLD domain-containing protein n=1 Tax=Ramazzottiu... [more]
A0A7S4M5X4_9EUKA4.970e-1250.94Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6A1Q3X1_BALPH2.160e-1150.00GOLD domain-containing protein n=2 Tax=Balaenopter... [more]
A0A8J5D472_9CHEL2.970e-1151.85Transmembrane emp24 domain-containing protein n=1 ... [more]
A0A8J5BJM7_9DIPT1.150e-1053.70GOLD domain-containing protein n=2 Tax=Bradysia Ta... [more]
UPI00188491041.500e-1048.15transmembrane emp24 domain-containing protein 2-li... [more]
A0A1W0WES3_HYPDU3.320e-1050.00Transmembrane emp24 domain-containing protein n=1 ... [more]
A0A6J8C220_MYTCO3.280e-944.44TMED2 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8C220_... [more]
A0A815DC48_ADIRI8.820e-943.40Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A817NSB2_9BILA1.090e-844.44Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122321contigM-pyrifera_M_contig122321:109..309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score69.3
Seed ortholog evalue7.6e-10
Seed eggNOG ortholog225400.XP_006768845.1
Preferred nameTMED2
KEGG koko:K20347
KEGG TC9.B.188.1.2
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000578,GO:0001568,GO:0001701,GO:0001756,GO:0001838,GO:0001841,GO:0001843,GO:0001890,GO:0001892,GO:0001893,GO:0001944,GO:0001947,GO:0002009,GO:0003002,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007507,GO:0007565,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009880,GO:0009887,GO:0009888,GO:0009893,GO:0009948,GO:0009952,GO:0009987,GO:0010256,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0012506,GO:0014020,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016331,GO:0019222,GO:0021915,GO:0022414,GO:0030135,GO:0030137,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032525,GO:0033036,GO:0034260,GO:0034613,GO:0035050,GO:0035148,GO:0035239,GO:0035264,GO:0035282,GO:0035295,GO:0036342,GO:0040007,GO:0042588,GO:0042589,GO:0042886,GO:0043009,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048562,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051346,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0060135,GO:0060255,GO:0060429,GO:0060562,GO:0060606,GO:0060674,GO:0060711,GO:0060716,GO:0061053,GO:0061371,GO:0061458,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072175,GO:0072358,GO:0072359,GO:0072657,GO:0072659,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:1990778
EggNOG free text desc.Transmembrane emp24 domain-containing protein 2
EggNOG OGs38HZS@33154,3BDBC@33208,3CV3N@33213,3J2RT@40674,47Z3D@7711,48VMB@7742,4M3S8@9397,KOG1692@1,KOG1692@2759
COG Functional cat.U
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04131
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.002057-CDS-M-pyrifera_M_contig122321:108..3091622815743.002057-CDS-M-pyrifera_M_contig122321:108..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122321 109..309 +
1692277548.3208122-CDS-M-pyrifera_M_contig122321:108..3091692277548.3208122-CDS-M-pyrifera_M_contig122321:108..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122321 109..309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122321.4598.1prot_M-pyrifera_M_contig122321.4598.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122321 109..309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122321.4598.1

>prot_M-pyrifera_M_contig122321.4598.1 ID=prot_M-pyrifera_M_contig122321.4598.1|Name=mRNA_M-pyrifera_M_contig122321.4598.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
LSALLSRLQLTWRQVTAPDNQMIYAGRREKAGRYFFVTHVKGPYRMCFSN
KMSTVTAKTVNMVLNIG
back to top

mRNA from alignment at M-pyrifera_M_contig122321:109..309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122321.4598.1 ID=mRNA_M-pyrifera_M_contig122321.4598.1|Name=mRNA_M-pyrifera_M_contig122321.4598.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig122321:109..309+ (Macrocystis pyrifera P11B4 male)
CTCTCTGCTCTCCTCTCTCGACTGCAGCTAACGTGGCGCCAGGTGACTGC
TCCCGACAACCAGATGATCTACGCCGGCAGGAGGGAGAAGGCAGGTCGCT
ACTTCTTCGTCACCCACGTGAAGGGCCCTTACAGGATGTGCTTCAGCAAC
AAGATGTCCACTGTCACCGCCAAGACCGTCAACATGGTGCTCAACATCGG
C
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122321:109..309+

>mRNA_M-pyrifera_M_contig122321.4598.1 ID=mRNA_M-pyrifera_M_contig122321.4598.1|Name=mRNA_M-pyrifera_M_contig122321.4598.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig122321:109..309+ (Macrocystis pyrifera P11B4 male)
CTCTCTGCTCTCCTCTCTCGACTGCAGCTAACGTGGCGCCAGGTGACTGC
TCCCGACAACCAGATGATCTACGCCGGCAGGAGGGAGAAGGCAGGTCGCT
ACTTCTTCGTCACCCACGTGAAGGGCCCTTACAGGATGTGCTTCAGCAAC
AAGATGTCCACTGTCACCGCCAAGACCGTCAACATGGTGCTCAACATCGG
CCTCTCTGCTCTCCTCTCTCGACTGCAGCTAACGTGGCGCCAGGTGACTG
CTCCCGACAACCAGATGATCTACGCCGGCAGGAGGGAGAAGGCAGGTCGC
TACTTCTTCGTCACCCACGTGAAGGGCCCTTACAGGATGTGCTTCAGCAA
CAAGATGTCCACTGTCACCGCCAAGACCGTCAACATGGTGCTCAACATCG
GC
back to top