mRNA_M-pyrifera_M_contig122244.4589.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122244.4589.1
Unique NamemRNA_M-pyrifera_M_contig122244.4589.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122244.4589.1 vs. uniprot
Match: A0A8G2BGP3_9PROT (Uncharacterized protein n=2 Tax=Thalassobaculaceae TaxID=2844864 RepID=A0A8G2BGP3_9PROT)

HSP 1 Score: 187 bits (474), Expect = 8.630e-58
Identity = 91/150 (60.67%), Postives = 119/150 (79.33%), Query Frame = 1 
Query:    1 SRLSITGGFLLGFGVIATATNRPSLNVNAVLANGGAWDIPWRTFLVQVGDPGHYAYAPLWRHLTVGDLDLPWLIYGVMTTFTLLAAALATLVMLRGEEFIIGIVAMAYQILVIQALTIYVILLLAYTLCTFNFWTALLALGVLQYYRHMK 450
            S+L++T G LLG GVIA +  RPS ++NA++A+GGAWD+ WR FL  + +PG Y Y  LW  L+  DL   W+IYGV  +  LLA+A+ATLVMLRGEEF+IG+ AM Y+IL++QAL +YVI+LLAYTLCTFNFWTALLAL +LQYYR+++
Sbjct:   30 SKLAMTTGLLLGIGVIAASPERPSFDINAIVADGGAWDVTWRRFLTDIANPGLYRYDALWSMLSSQDLSGSWMIYGVAVSAALLASAIATLVMLRGEEFLIGVFAMMYEILLMQALAMYVIMLLAYTLCTFNFWTALLALMILQYYRYVQ 179
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BLAST of mRNA_M-pyrifera_M_contig122244.4589.1 vs. uniprot
Match: UPI0019C3F96E (Uncharacterized protein n=2 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0019C3F96E)

HSP 1 Score: 102 bits (255), Expect = 2.070e-24
Identity = 62/147 (42.18%), Postives = 84/147 (57.14%), Query Frame = 1 
Query:   10 SITGGFLLGFGVIATATNRPSLNVNAVLANGGAWDIPWRTFLVQVGDPGHYAYAPLWRHLTVGDLDLPWLIYGVMTTFTLLA-AALATLVMLRGEEFIIGIVAMAYQILVIQALTIYVILLLAYTLCTFNFWTALLALGVLQYYRHM 447
            +++ G  L + ++      PS  ++AV   GG WDIPW TFL    DP  Y Y  L   L   D+D P L   +++   LL  A +A LV LR  +   G++ + + +L  QA+TIYV  L AYTL T NFW AL+AL VLQYYRH+
Sbjct:   58 AMSAGVALAWCILYADPFGPSFRISAVFEVGGPWDIPWTTFLTNRADPALYGYEKLLPVLRTPDID-PSLALALLSIGVLLVIAVVAALVYLRDMDLAAGLLGIPFLVLFSQAVTIYVTALFAYTLNTLNFWAALVALAVLQYYRHL 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122244.4589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8G2BGP3_9PROT8.630e-5860.67Uncharacterized protein n=2 Tax=Thalassobaculaceae... [more]
UPI0019C3F96E2.070e-2442.18Uncharacterized protein n=2 Tax=Thalassobaculum fu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122244contigM-pyrifera_M_contig122244:2..457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score89.0
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog331869.BAL199_24149
Hectar predicted targeting categorysignal peptide
EggNOG OGs1P3Z7@1224,296TP@1,2UYFT@28211,2ZU2N@2
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.4734519-CDS-M-pyrifera_M_contig122244:1..4571622815742.4734519-CDS-M-pyrifera_M_contig122244:1..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122244 2..457 +
1692277548.0975442-CDS-M-pyrifera_M_contig122244:1..4571692277548.0975442-CDS-M-pyrifera_M_contig122244:1..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122244 2..457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122244.4589.1prot_M-pyrifera_M_contig122244.4589.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122244 2..457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122244.4589.1

>prot_M-pyrifera_M_contig122244.4589.1 ID=prot_M-pyrifera_M_contig122244.4589.1|Name=mRNA_M-pyrifera_M_contig122244.4589.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
SRLSITGGFLLGFGVIATATNRPSLNVNAVLANGGAWDIPWRTFLVQVGD
PGHYAYAPLWRHLTVGDLDLPWLIYGVMTTFTLLAAALATLVMLRGEEFI
IGIVAMAYQILVIQALTIYVILLLAYTLCTFNFWTALLALGVLQYYRHMK
H*
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mRNA from alignment at M-pyrifera_M_contig122244:2..457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122244.4589.1 ID=mRNA_M-pyrifera_M_contig122244.4589.1|Name=mRNA_M-pyrifera_M_contig122244.4589.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig122244:2..457+ (Macrocystis pyrifera P11B4 male)
TCCCGGTTGTCGATTACGGGCGGTTTCCTGCTCGGCTTCGGCGTCATCGC
CACGGCCACCAACCGGCCATCCTTGAACGTGAACGCGGTGCTCGCCAACG
GCGGAGCCTGGGACATTCCCTGGCGCACCTTCCTGGTCCAGGTCGGCGAC
CCCGGCCACTATGCCTATGCCCCGCTATGGCGGCACCTGACCGTCGGCGA
CCTCGATCTGCCGTGGCTGATCTACGGGGTGATGACGACGTTCACGCTGC
TTGCCGCGGCCTTGGCGACGCTGGTCATGCTGCGGGGCGAGGAGTTCATC
ATCGGCATCGTCGCCATGGCCTATCAGATCCTGGTGATCCAGGCGCTGAC
CATCTACGTGATCCTGCTCCTGGCCTACACGCTGTGCACGTTCAACTTCT
GGACCGCCCTGCTGGCACTTGGCGTGCTGCAGTATTACCGCCACATGAAA
CATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122244:2..457+

>mRNA_M-pyrifera_M_contig122244.4589.1 ID=mRNA_M-pyrifera_M_contig122244.4589.1|Name=mRNA_M-pyrifera_M_contig122244.4589.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig122244:2..457+ (Macrocystis pyrifera P11B4 male)
TCCCGGTTGTCGATTACGGGCGGTTTCCTGCTCGGCTTCGGCGTCATCGC
CACGGCCACCAACCGGCCATCCTTGAACGTGAACGCGGTGCTCGCCAACG
GCGGAGCCTGGGACATTCCCTGGCGCACCTTCCTGGTCCAGGTCGGCGAC
CCCGGCCACTATGCCTATGCCCCGCTATGGCGGCACCTGACCGTCGGCGA
CCTCGATCTGCCGTGGCTGATCTACGGGGTGATGACGACGTTCACGCTGC
TTGCCGCGGCCTTGGCGACGCTGGTCATGCTGCGGGGCGAGGAGTTCATC
ATCGGCATCGTCGCCATGGCCTATCAGATCCTGGTGATCCAGGCGCTGAC
CATCTACGTGATCCTGCTCCTGGCCTACACGCTGTGCACGTTCAACTTCT
GGACCGCCCTGCTGGCACTTGGCGTGCTGCAGTATTACCGCCACATGAAA
CATTGATCCCGGTTGTCGATTACGGGCGGTTTCCTGCTCGGCTTCGGCGT
CATCGCCACGGCCACCAACCGGCCATCCTTGAACGTGAACGCGGTGCTCG
CCAACGGCGGAGCCTGGGACATTCCCTGGCGCACCTTCCTGGTCCAGGTC
GGCGACCCCGGCCACTATGCCTATGCCCCGCTATGGCGGCACCTGACCGT
CGGCGACCTCGATCTGCCGTGGCTGATCTACGGGGTGATGACGACGTTCA
CGCTGCTTGCCGCGGCCTTGGCGACGCTGGTCATGCTGCGGGGCGAGGAG
TTCATCATCGGCATCGTCGCCATGGCCTATCAGATCCTGGTGATCCAGGC
GCTGACCATCTACGTGATCCTGCTCCTGGCCTACACGCTGTGCACGTTCA
ACTTCTGGACCGCCCTGCTGGCACTTGGCGTGCTGCAGTATTACCGCCAC
ATGAAACATTGA
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