mRNA_M-pyrifera_M_contig122243.4588.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122243.4588.1
Unique NamemRNA_M-pyrifera_M_contig122243.4588.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122243.4588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122243contigM-pyrifera_M_contig122243:125..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.430758-CDS-M-pyrifera_M_contig122243:124..2821622815742.430758-CDS-M-pyrifera_M_contig122243:124..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122243 125..282 +
1692277548.0812943-CDS-M-pyrifera_M_contig122243:124..2821692277548.0812943-CDS-M-pyrifera_M_contig122243:124..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122243 125..282 +
1622815742.4407966-CDS-M-pyrifera_M_contig122243:363..5261622815742.4407966-CDS-M-pyrifera_M_contig122243:363..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122243 364..526 +
1692277548.08979-CDS-M-pyrifera_M_contig122243:363..5261692277548.08979-CDS-M-pyrifera_M_contig122243:363..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122243 364..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122243.4588.1prot_M-pyrifera_M_contig122243.4588.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122243 125..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122243.4588.1

>prot_M-pyrifera_M_contig122243.4588.1 ID=prot_M-pyrifera_M_contig122243.4588.1|Name=mRNA_M-pyrifera_M_contig122243.4588.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MRILTLALIGLLVASTAQAEQISFANYADNNGERAYTFDDSIYFGSQEVK
LQATFETSGYSTGPYAYLDRGNAGLGVAGRVTQTLQVNPSNDDNTGSLST
QSALDGL
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mRNA from alignment at M-pyrifera_M_contig122243:125..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122243.4588.1 ID=mRNA_M-pyrifera_M_contig122243.4588.1|Name=mRNA_M-pyrifera_M_contig122243.4588.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig122243:125..526+ (Macrocystis pyrifera P11B4 male)
ATGAGAATTTTAACTTTGGCCTTAATTGGCCTCCTTGTCGCCTCAACGGC
GCAGGCTGAGCAAATCAGTTTCGCGAATTATGCGGATAACAATGGTGAAA
GAGCTTACACTTTTGACGACAGCATCTACTTCGGAAGCCAGGAAGTAAAA
CTGCAAGCGTGGCGGATGACGGATGACACCGAGCCTTTCCCGCTAACAGG
GCCAATCGACGATATCAACACATTGGTGCAGGGATCTAGTACGTTTGAAA
CATCCGGCTACTCCACCGGCCCGTATGCCTACTTGGATCGCGGAAATGCC
GGGCTTGGTGTTGCGGGAAGAGTAACTCAAACATTGCAGGTCAATCCGAG
CAACGACGACAATACTGGTTCTCTCAGTACCCAATCAGCGCTTGATGGAC
TC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122243:125..526+

>mRNA_M-pyrifera_M_contig122243.4588.1 ID=mRNA_M-pyrifera_M_contig122243.4588.1|Name=mRNA_M-pyrifera_M_contig122243.4588.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig122243:125..526+ (Macrocystis pyrifera P11B4 male)
ATGAGAATTTTAACTTTGGCCTTAATTGGCCTCCTTGTCGCCTCAACGGC
GCAGGCTGAGCAAATCAGTTTCGCGAATTATGCGGATAACAATGGTGAAA
GAGCTTACACTTTTGACGACAGCATCTACTTCGGAAGCCAGGAAGTAAAA
CTGCAAGCATGAGAATTTTAACTTTGGCCTTAATTGGCCTCCTTGTCGCC
TCAACGGCGCAGGCTGAGCAAATCAGTTTCGCGAATTATGCGGATAACAA
TGGTGAAAGAGCTTACACTTTTGACGACAGCATCTACTTCGGAAGCCAGG
AAGTAAAACTGCAAGCTACGTTTGAAACATCCGGCTACTCCACCGGCCCG
TATGCCTACTTGGATCGCGGAAATGCCGGGCTTGGTGTTGCGGGAAGAGT
AACTCAAACATTGCAGGTCAATCCGAGCAACGACGACAATACTGGTTCTC
TCAGTACCCAATCAGCGCTTGATGGACTCTACGTTTGAAACATCCGGCTA
CTCCACCGGCCCGTATGCCTACTTGGATCGCGGAAATGCCGGGCTTGGTG
TTGCGGGAAGAGTAACTCAAACATTGCAGGTCAATCCGAGCAACGACGAC
AATACTGGTTCTCTCAGTACCCAATCAGCGCTTGATGGACTC
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