mRNA_M-pyrifera_M_contig122239.4585.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122239.4585.1
Unique NamemRNA_M-pyrifera_M_contig122239.4585.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122239.4585.1 vs. uniprot
Match: A0A2E7KJT2_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJT2_9PLAN)

HSP 1 Score: 175 bits (443), Expect = 9.780e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSAPSAGTYEAPQQALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLGA 270
            MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSAPSAGTYEAPQQALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLGA
Sbjct:    1 MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSAPSAGTYEAPQQALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLGA 90
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BLAST of mRNA_M-pyrifera_M_contig122239.4585.1 vs. uniprot
Match: A0A6I6ACM3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ACM3_9PLAN)

HSP 1 Score: 154 bits (388), Expect = 2.330e-46
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSAPSAGTYEAPQQALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLGA 270
            MDWFTFLILLLTASLTA AVWWAIQKWFR ESE I EDSA  AG+YEAPQ ALYWNFTTVLIAVCILLLVLGISVQTTSLR+PITWTLGA
Sbjct:    1 MDWFTFLILLLTASLTALAVWWAIQKWFRVESESIVEDSASIAGSYEAPQHALYWNFTTVLIAVCILLLVLGISVQTTSLRDPITWTLGA 90
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BLAST of mRNA_M-pyrifera_M_contig122239.4585.1 vs. uniprot
Match: A0A518FQ38_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FQ38_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 2.090e-38
Identity = 74/94 (78.72%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:    1 MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISE----DSAPSAGTYEAPQQALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLGA 270
            MDWFTFLILLLTASLTA AVWWAIQKWFRDE+E ISE    D  P     E PQ ALYWNFT+VLIAVC LLLVLGISVQTTS+RNP+TWTLGA
Sbjct:    1 MDWFTFLILLLTASLTALAVWWAIQKWFRDEAESISEASFQDIHPVTDDSE-PQHALYWNFTSVLIAVCALLLVLGISVQTTSIRNPVTWTLGA 93
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BLAST of mRNA_M-pyrifera_M_contig122239.4585.1 vs. uniprot
Match: A0A517Q1F6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q1F6_9PLAN)

HSP 1 Score: 131 bits (330), Expect = 1.710e-37
Identity = 72/93 (77.42%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSA----PSAGTYEAPQQALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLG 267
            MDWFTFLILLLTASLTA AVWWAIQKWFRDESE +SE++     P     E PQ ALYWNFTTVLI+VC LLLVLGISVQT S+RNPITWTLG
Sbjct:    1 MDWFTFLILLLTASLTALAVWWAIQKWFRDESESVSEETMQDIHPVTDESE-PQHALYWNFTTVLISVCTLLLVLGISVQTMSIRNPITWTLG 92
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BLAST of mRNA_M-pyrifera_M_contig122239.4585.1 vs. uniprot
Match: A0A518I6V6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6V6_9PLAN)

HSP 1 Score: 67.4 bits (163), Expect = 3.250e-12
Identity = 46/92 (50.00%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:    1 MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSAPSAGTY--EAPQQA--LYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTL 264
            M+WF FLI LLTA   +  VW+AI+  FR +SE  S    P         P  A  L+WNFT  LI V  LLLVLGIS+QT S R+P+T TL
Sbjct:    1 MEWFAFLIYLLTAVCCSLLVWFAIKVGFRTDSEPESTSHQPEETNVVDSIPDAARKLHWNFTAALIVVPTLLLVLGISMQTASWRHPVTGTL 92
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BLAST of mRNA_M-pyrifera_M_contig122239.4585.1 vs. uniprot
Match: A0A517WT05_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WT05_9PLAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.800e-8
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSAPSAGTYEA----PQQALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLG 267
            M+WF FLI  L A      +W+ I+  FRD   + SE   P     +      ++ LYWNF++VLI +  LLLVLGISV+   L +P+  TLG
Sbjct:    1 MEWFAFLIYFLIAFFCTLVLWFMIKVCFRDT--IPSEPKLPEPKEIDTIPLVAKERLYWNFSSVLIVILTLLLVLGISVRDLPLSHPVILTLG 91
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BLAST of mRNA_M-pyrifera_M_contig122239.4585.1 vs. uniprot
Match: A0A517W2V6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W2V6_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 8.560e-8
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:    1 MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSAPSAGTYEA----PQQALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLG 267
            M+WF FLI  L A      +W+ I+  FR  +   SE   P     +      ++ LYWNF++VLI +  LLLVLGISV+   L +P+  TLG
Sbjct:    1 MEWFAFLIYFLIAFFCTLVLWFTIKVGFRGSAS--SEPMLPEPKEIDTFPLVAKERLYWNFSSVLIVILTLLLVLGISVRDLPLSHPVVLTLG 91
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122239.4585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2E7KJT2_9PLAN9.780e-55100.00Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A6I6ACM3_9PLAN2.330e-4690.00Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A518FQ38_9PLAN2.090e-3878.72Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517Q1F6_9PLAN1.710e-3777.42Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A518I6V6_9PLAN3.250e-1250.00Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517WT05_9PLAN1.800e-840.86Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A517W2V6_9PLAN8.560e-839.78Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122239contigM-pyrifera_M_contig122239:2..271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size270
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.3231316-CDS-M-pyrifera_M_contig122239:1..2711622815742.3231316-CDS-M-pyrifera_M_contig122239:1..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122239 2..271 -
1692277548.0375738-CDS-M-pyrifera_M_contig122239:1..2711692277548.0375738-CDS-M-pyrifera_M_contig122239:1..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122239 2..271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122239.4585.1prot_M-pyrifera_M_contig122239.4585.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122239 2..271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122239.4585.1

>prot_M-pyrifera_M_contig122239.4585.1 ID=prot_M-pyrifera_M_contig122239.4585.1|Name=mRNA_M-pyrifera_M_contig122239.4585.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MDWFTFLILLLTASLTASAVWWAIQKWFRDESELISEDSAPSAGTYEAPQ
QALYWNFTTVLIAVCILLLVLGISVQTTSLRNPITWTLGA
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mRNA from alignment at M-pyrifera_M_contig122239:2..271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122239.4585.1 ID=mRNA_M-pyrifera_M_contig122239.4585.1|Name=mRNA_M-pyrifera_M_contig122239.4585.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig122239:2..271- (Macrocystis pyrifera P11B4 male)
ATGGATTGGTTCACCTTTCTGATATTACTGCTGACTGCTTCGCTGACGGC
GTCGGCTGTCTGGTGGGCCATTCAGAAATGGTTTCGCGACGAGTCCGAAT
TGATCAGCGAAGACTCAGCTCCGAGTGCCGGCACTTATGAAGCACCTCAG
CAGGCGCTGTACTGGAACTTTACGACCGTATTGATAGCCGTCTGTATTCT
GCTGCTGGTACTGGGAATCAGCGTGCAGACAACCTCACTGCGGAACCCGA
TCACCTGGACTCTGGGAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122239:2..271-

>mRNA_M-pyrifera_M_contig122239.4585.1 ID=mRNA_M-pyrifera_M_contig122239.4585.1|Name=mRNA_M-pyrifera_M_contig122239.4585.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig122239:2..271- (Macrocystis pyrifera P11B4 male)
ATGGATTGGTTCACCTTTCTGATATTACTGCTGACTGCTTCGCTGACGGC
GTCGGCTGTCTGGTGGGCCATTCAGAAATGGTTTCGCGACGAGTCCGAAT
TGATCAGCGAAGACTCAGCTCCGAGTGCCGGCACTTATGAAGCACCTCAG
CAGGCGCTGTACTGGAACTTTACGACCGTATTGATAGCCGTCTGTATTCT
GCTGCTGGTACTGGGAATCAGCGTGCAGACAACCTCACTGCGGAACCCGA
TCACCTGGACTCTGGGAGCGATGGATTGGTTCACCTTTCTGATATTACTG
CTGACTGCTTCGCTGACGGCGTCGGCTGTCTGGTGGGCCATTCAGAAATG
GTTTCGCGACGAGTCCGAATTGATCAGCGAAGACTCAGCTCCGAGTGCCG
GCACTTATGAAGCACCTCAGCAGGCGCTGTACTGGAACTTTACGACCGTA
TTGATAGCCGTCTGTATTCTGCTGCTGGTACTGGGAATCAGCGTGCAGAC
AACCTCACTGCGGAACCCGATCACCTGGACTCTGGGAGCG
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