mRNA_M-pyrifera_M_contig122205.4578.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122205.4578.1
Unique NamemRNA_M-pyrifera_M_contig122205.4578.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A2D8LRB9_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LRB9_9ACTN)

HSP 1 Score: 196 bits (498), Expect = 5.420e-61
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 1
Query:    1 SGFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRPP 351
            SGFEV+THGGRTRTG+DAVVWA E  RLGAGEILLTSM+RDGTK+GFD+PLT+ IT AV +PVIASGGVG L+HLVEGVTEGGADAVLAASIFHFGEHTV EAK +ML+AGV VRPP
Sbjct:  141 SGFEVFTHGGRTRTGVDAVVWAKEVVRLGAGEILLTSMDRDGTKNGFDLPLTSTITEAVDVPVIASGGVGALEHLVEGVTEGGADAVLAASIFHFGEHTVGEAKALMLEAGVTVRPP 257          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A7K1Z9H9_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z9H9_9ACTN)

HSP 1 Score: 189 bits (480), Expect = 2.640e-58
Identity = 95/115 (82.61%), Postives = 105/115 (91.30%), Query Frame = 1
Query:    7 FEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRPP 351
            FEVYTHGGRTRTGIDA+ WAAE +RLGAGEILLTSM+ DGTKDGFDIPLTAA+T+AV IPVIASGGVGTL HLVEGVT+GGADAVLAASIFHFGE+TVA+AK+V+    V VRPP
Sbjct:  141 FEVYTHGGRTRTGIDALQWAAEVQRLGAGEILLTSMDTDGTKDGFDIPLTAAVTSAVDIPVIASGGVGTLQHLVEGVTQGGADAVLAASIFHFGEYTVADAKRVLAANNVTVRPP 255          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A3M2H2X4_ACTSX (Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H2X4_ACTSX)

HSP 1 Score: 189 bits (479), Expect = 3.860e-58
Identity = 92/118 (77.97%), Postives = 106/118 (89.83%), Query Frame = 1
Query:    1 SGFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRPPD 354
            SGFEVYTHGGRTRTG+DAV WA E ERLGAGEILLTSM+RDGT++GFD+ LTAA+  AV +PVIASGGVGTL+HLV+GV EGGADAVLAASIFHFG+HTVA+AK+++   GV VRPPD
Sbjct:  139 SGFEVYTHGGRTRTGVDAVTWAREVERLGAGEILLTSMDRDGTREGFDLELTAAVADAVGVPVIASGGVGTLEHLVDGVLEGGADAVLAASIFHFGQHTVADAKRLLAARGVTVRPPD 256          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A7Y2DE95_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DE95_9ACTN)

HSP 1 Score: 181 bits (460), Expect = 3.080e-55
Identity = 89/116 (76.72%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    1 SGFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRP 348
            SGFEVYTHGGRTRTGIDA+ WAAECERLGAGEI+LTSM+RDGT+DGFDI +T A+ A + +P+IASGGVG LDHL EGV +GGADAVLAASIFHFGE++VAEAK  M   GV VRP
Sbjct:  143 SGFEVYTHGGRTRTGIDALEWAAECERLGAGEIMLTSMDRDGTRDGFDIEMTKAVNAVIGVPLIASGGVGGLDHLAEGVLDGGADAVLAASIFHFGEYSVAEAKAHMASRGVTVRP 258          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A7W0HAL8_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0HAL8_9ACTN)

HSP 1 Score: 180 bits (456), Expect = 1.070e-54
Identity = 87/115 (75.65%), Postives = 103/115 (89.57%), Query Frame = 1
Query:    4 GFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRP 348
            G+EVYTHGGR  TG+DAV WAAECERLGAGEILLTSM+RDGT+DG+D+ LT+A+T++V +PVIASGGVG LDHLV G  EGGADAVLAASIFHFGE T+A+AKQ + +AG+VVRP
Sbjct:  139 GYEVYTHGGRRPTGVDAVAWAAECERLGAGEILLTSMDRDGTRDGYDLALTSAVTSSVGVPVIASGGVGHLDHLVAGAREGGADAVLAASIFHFGEATIAQAKQRLTEAGLVVRP 253          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A520XNG2_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XNG2_9ACTN)

HSP 1 Score: 180 bits (456), Expect = 1.280e-54
Identity = 91/117 (77.78%), Postives = 100/117 (85.47%), Query Frame = 1
Query:    1 SGFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRPP 351
            SGFEVYTHGGRTRTGI AV WA E ERLGAGEI+LTSM+RDGT+DGFDI LT  I+ AV +PVIASGGVGTLDHL EGV +G A+AVLAASIFHFGEHT+A+AK  ML  GV VRPP
Sbjct:  143 SGFEVYTHGGRTRTGICAVTWANEVERLGAGEIMLTSMDRDGTRDGFDIELTQTISDAVGVPVIASGGVGTLDHLAEGVIDGHAEAVLAASIFHFGEHTIADAKNHMLSRGVTVRPP 259          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A5Q2RN38_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RN38_9ACTN)

HSP 1 Score: 178 bits (452), Expect = 5.460e-54
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    1 SGFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRP 348
            +GFEV+THGGRT TGID V WA   E LGAGEILLTSM+RDGT++GFD+ +T A+  A  +P+IASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEH+VAEAK +M D GV VRP
Sbjct:  146 TGFEVFTHGGRTPTGIDVVEWAQRAESLGAGEILLTSMDRDGTREGFDLEMTRAVAEATNVPIIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHSVAEAKALMADRGVTVRP 261          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A2N5JW92_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5JW92_9ACTN)

HSP 1 Score: 178 bits (451), Expect = 8.690e-54
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    4 GFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRP 348
            GFEVYTHGGR  TGIDAVVWAAECER GAGEILLTSM+RDGT+DGFD+ LT  +  A  +PVIASGGVGTLDHLV G  EGGADAVLAASIFHFGE TVA+AKQ +  AGV VRP
Sbjct:  140 GFEVYTHGGRRPTGIDAVVWAAECERRGAGEILLTSMDRDGTRDGFDLDLTRQVVDATNVPVIASGGVGTLDHLVAGAVEGGADAVLAASIFHFGEFTVAQAKQHLAAAGVCVRP 254          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A6G0A6S2_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A6S2_9ACTN)

HSP 1 Score: 177 bits (448), Expect = 2.140e-53
Identity = 87/116 (75.00%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 SGFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRP 348
            +GFEVYTHGGRT TG +AV WA  CERLGAGEILLTSM+RDGT+DGFD  LT  +  A  IPVIASGGVGTLDHLVEG+TEGGADAVLAASIFHF +H++AEAK+ M  AG+ VRP
Sbjct:  144 AGFEVYTHGGRTATGTEAVAWARRCERLGAGEILLTSMDRDGTRDGFDTELTRRVVDATNIPVIASGGVGTLDHLVEGITEGGADAVLAASIFHFSQHSIAEAKEHMARAGLQVRP 259          
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Match: A0A6I3EUK9_9ACTN (Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=root TaxID=1 RepID=A0A6I3EUK9_9ACTN)

HSP 1 Score: 176 bits (446), Expect = 3.940e-53
Identity = 88/116 (75.86%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 SGFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIPLTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTVAEAKQVMLDAGVVVRP 348
            SGFEVY HGGRT TGIDAV WA E  RLGAGEILLTSM+RDGTK+GFD+PLT  +  AV +PVIASGGVGTL+HLV+GVTEG A  VLAASIFHFG+HT+AEAK VM  AG+ VRP
Sbjct:  142 SGFEVYLHGGRTATGIDAVWWATEAARLGAGEILLTSMDRDGTKEGFDLPLTRRVADAVGVPVIASGGVGTLEHLVDGVTEGRATGVLAASIFHFGQHTIAEAKAVMAAAGITVRP 257          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122205.4578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LRB9_9ACTN5.420e-6182.91Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A7K1Z9H9_9ACTN2.640e-5882.61Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A3M2H2X4_ACTSX3.860e-5877.97Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A7Y2DE95_9ACTN3.080e-5576.72Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A7W0HAL8_9ACTN1.070e-5475.65Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A520XNG2_9ACTN1.280e-5477.78Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A5Q2RN38_9ACTN5.460e-5475.00Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A2N5JW92_9ACTN8.690e-5478.26Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A6G0A6S2_9ACTN2.140e-5375.00Imidazole glycerol phosphate synthase subunit HisF... [more]
A0A6I3EUK9_9ACTN3.940e-5375.86Imidazole glycerol phosphate synthase subunit HisF... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122205contigM-pyrifera_M_contig122205:172..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score180.6
Seed ortholog evalue4.2e-43
Seed eggNOG ortholog1089552.KI911559_gene319
Preferred namehisF
KEGG rclassRC00010,RC01190,RC01943,RC02148,RC02414
KEGG koko:K01657,ko:K02500
KEGG ReactionR00985,R00986,R04558
KEGG Pathwayko00340,ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00340,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025
KEGG ModuleM00023,M00026
Hectar predicted targeting categoryother localisation
GOsGO:0000107,GO:0003674,GO:0003824,GO:0008150,GO:0016740,GO:0016757,GO:0016763,GO:0040007
EggNOG free text desc.IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
EggNOG OGs1MUS0@1224,2JPAN@204441,2TQXD@28211,COG0107@1,COG0107@2
EC4.1.3.27
COG Functional cat.E
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.0249836-CDS-M-pyrifera_M_contig122205:171..5281622815742.0249836-CDS-M-pyrifera_M_contig122205:171..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122205 172..528 -
1692277547.9320655-CDS-M-pyrifera_M_contig122205:171..5281692277547.9320655-CDS-M-pyrifera_M_contig122205:171..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122205 172..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122205.4578.1prot_M-pyrifera_M_contig122205.4578.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122205 172..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122205.4578.1

>prot_M-pyrifera_M_contig122205.4578.1 ID=prot_M-pyrifera_M_contig122205.4578.1|Name=mRNA_M-pyrifera_M_contig122205.4578.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
SGFEVYTHGGRTRTGIDAVVWAAECERLGAGEILLTSMNRDGTKDGFDIP
LTAAITAAVTIPVIASGGVGTLDHLVEGVTEGGADAVLAASIFHFGEHTV
AEAKQVMLDAGVVVRPPD*
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mRNA from alignment at M-pyrifera_M_contig122205:172..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122205.4578.1 ID=mRNA_M-pyrifera_M_contig122205.4578.1|Name=mRNA_M-pyrifera_M_contig122205.4578.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig122205:172..528- (Macrocystis pyrifera P11B4 male)
AGCGGCTTCGAGGTCTACACCCATGGCGGGCGCACCCGCACCGGCATCGA TGCCGTCGTGTGGGCTGCTGAATGCGAGCGTCTGGGGGCGGGTGAGATCC TGCTCACGTCGATGAACCGCGACGGGACCAAGGACGGCTTCGATATCCCG CTCACCGCGGCGATCACCGCCGCAGTCACCATTCCCGTGATCGCCTCGGG TGGGGTCGGCACCCTCGACCATCTGGTCGAGGGCGTGACCGAGGGCGGCG CCGACGCGGTGCTGGCCGCCAGCATCTTCCATTTCGGCGAACACACCGTG GCCGAGGCCAAGCAGGTGATGCTCGACGCGGGCGTGGTGGTTCGTCCACC CGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122205:172..528-

>mRNA_M-pyrifera_M_contig122205.4578.1 ID=mRNA_M-pyrifera_M_contig122205.4578.1|Name=mRNA_M-pyrifera_M_contig122205.4578.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig122205:172..528- (Macrocystis pyrifera P11B4 male)
AGCGGCTTCGAGGTCTACACCCATGGCGGGCGCACCCGCACCGGCATCGA
TGCCGTCGTGTGGGCTGCTGAATGCGAGCGTCTGGGGGCGGGTGAGATCC
TGCTCACGTCGATGAACCGCGACGGGACCAAGGACGGCTTCGATATCCCG
CTCACCGCGGCGATCACCGCCGCAGTCACCATTCCCGTGATCGCCTCGGG
TGGGGTCGGCACCCTCGACCATCTGGTCGAGGGCGTGACCGAGGGCGGCG
CCGACGCGGTGCTGGCCGCCAGCATCTTCCATTTCGGCGAACACACCGTG
GCCGAGGCCAAGCAGGTGATGCTCGACGCGGGCGTGGTGGTTCGTCCACC
CGACTGAAGCGGCTTCGAGGTCTACACCCATGGCGGGCGCACCCGCACCG
GCATCGATGCCGTCGTGTGGGCTGCTGAATGCGAGCGTCTGGGGGCGGGT
GAGATCCTGCTCACGTCGATGAACCGCGACGGGACCAAGGACGGCTTCGA
TATCCCGCTCACCGCGGCGATCACCGCCGCAGTCACCATTCCCGTGATCG
CCTCGGGTGGGGTCGGCACCCTCGACCATCTGGTCGAGGGCGTGACCGAG
GGCGGCGCCGACGCGGTGCTGGCCGCCAGCATCTTCCATTTCGGCGAACA
CACCGTGGCCGAGGCCAAGCAGGTGATGCTCGACGCGGGCGTGGTGGTTC
GTCCACCCGACTGA
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