mRNA_M-pyrifera_M_contig122118.4548.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122118.4548.1
Unique NamemRNA_M-pyrifera_M_contig122118.4548.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: L8GNW5_ACACA (Carrier superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GNW5_ACACA)

HSP 1 Score: 114 bits (284), Expect = 2.820e-29
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNLHTGGGVAR 237
            + R+RMQI+GL LE++Y+Y Y  TWH L TI + EGWR LFRGLHINY+KVVP+VS+SFT+ND +RR+  L T GGV R
Sbjct:  194 IKRQRMQIDGLMLEQTYSYKYLSTWHGLQTIAQKEGWRTLFRGLHINYIKVVPLVSVSFTINDLMRRWMGLKTEGGVER 272
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BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: A0A7S4MKU8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MKU8_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 8.880e-22
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKS-YNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            V+RRRMQI+G+   KS ++Y Y+ +W AL  I +TEGW+MLFRGLHINY+KVVP+VS+SFT+ND LR +  +
Sbjct:  231 VIRRRMQIDGVTSGKSAFSYKYQSSWTALKHIYRTEGWKMLFRGLHINYIKVVPLVSVSFTVNDVLRSFLGI 302
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BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: A0A8J4QJ79_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4QJ79_9ROSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.450e-15
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            VVRR+MQ+E L+     +  Y+ TW  L+TIV  +GWR LF GL INY+K+VP V+I FT ND ++ +  +
Sbjct:   75 VVRRQMQVENLQPSFQGSARYRNTWEGLTTIVHNQGWRQLFAGLSINYIKIVPSVAIGFTANDMMKFWLRI 145
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BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: B9RQR8_RICCO (Grave disease carrier protein, putative n=3 Tax=Ricinus communis TaxID=3988 RepID=B9RQR8_RICCO)

HSP 1 Score: 77.4 bits (189), Expect = 5.460e-15
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            VVRR+MQ+E L+     +  Y+ TW  LSTIV+ +GWR LF GL INY+K+VP V+I FT  DT++ +  +
Sbjct:  262 VVRRQMQVENLQPSVQGHGRYRNTWDGLSTIVRKQGWRQLFAGLSINYIKIVPSVAIGFTAYDTMKMWLRI 332
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BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: A0A8J4QKX3_9ROSI (Uncharacterized protein n=2 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4QKX3_9ROSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.500e-15
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            VVRR+MQ+E L+     +  Y+ TW  L+TIV  +GWR LF GL INY+K+VP V+I FT  D ++ +  +
Sbjct:   22 VVRRQMQVENLQPSFQGSARYRNTWEGLTTIVHNQGWRQLFAGLSINYIKIVPSVAIGFTAYDMMKFWLRM 92
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BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: A0A8J4RCN0_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4RCN0_9ROSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.680e-14
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            VVRR+MQ+E L+     +  Y+ TW  L+TIV+ +GWR LF GL INY+K+VP V+I FT  D ++ +  +
Sbjct:  100 VVRRQMQVENLQPSFQGSVRYRNTWEGLTTIVRNQGWRQLFAGLSINYIKIVPSVAIGFTAYDMMKFWLRI 170
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BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: M1AEQ6_SOLTU (Grave disease carrier protein n=9 Tax=Solanoideae TaxID=424551 RepID=M1AEQ6_SOLTU)

HSP 1 Score: 75.1 bits (183), Expect = 3.630e-14
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            VVRR+MQ+E L+        Y+ T+  LS+IV+ +GWR LF GL +NY+K+VP V+I FT  DT++ Y N+
Sbjct:  261 VVRRQMQVEHLQPSLQDRARYRSTFDGLSSIVRNQGWRQLFAGLSVNYMKIVPSVAIGFTAYDTMKAYLNV 331
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BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: A0A6P8E3J5_PUNGR (mitochondrial carrier protein CoAc1 isoform X2 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A6P8E3J5_PUNGR)

HSP 1 Score: 73.9 bits (180), Expect = 4.020e-14
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            VVRR+MQ+E L+        Y+ TW  L+TIV+ +GWR LF GL INY+K+VP V+I FT  D ++ +  +
Sbjct:  164 VVRRQMQVESLQPAAEGQARYRNTWDGLTTIVRNQGWRQLFAGLSINYIKIVPSVAIGFTAYDMMKGWLRI 234
[Close]
BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: A0A2P2IVN0_RHIMU (Mitochondrial substrate carrier family protein n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2IVN0_RHIMU)

HSP 1 Score: 74.3 bits (181), Expect = 6.760e-14
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            VVRR+MQ+E L+     N  Y+ T   LSTI++ +GWR LF GL INYLK+VP V+I FT+ D ++ + ++
Sbjct:  250 VVRRQMQVENLQAPTQGNGRYRNTLEGLSTIIRNQGWRQLFAGLSINYLKIVPSVAIGFTVYDMMKIWLHI 320
[Close]
BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Match: A0A218VS73_PUNGR (mitochondrial carrier protein CoAc1 isoform X1 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218VS73_PUNGR)

HSP 1 Score: 73.9 bits (180), Expect = 1.000e-13
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 VVRRRMQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMVSISFTLNDTLRRYFNL 213
            VVRR+MQ+E L+        Y+ TW  L+TIV+ +GWR LF GL INY+K+VP V+I FT  D ++ +  +
Sbjct:  262 VVRRQMQVESLQPAAEGQARYRNTWDGLTTIVRNQGWRQLFAGLSINYIKIVPSVAIGFTAYDMMKGWLRI 332
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122118.4548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GNW5_ACACA2.820e-2963.29Carrier superfamily protein n=1 Tax=Acanthamoeba c... [more]
A0A7S4MKU8_9EUKA8.880e-2259.72Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A8J4QJ79_9ROSI1.450e-1547.89Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
B9RQR8_RICCO5.460e-1549.30Grave disease carrier protein, putative n=3 Tax=Ri... [more]
A0A8J4QKX3_9ROSI6.500e-1546.48Uncharacterized protein n=2 Tax=Castanea mollissim... [more]
A0A8J4RCN0_9ROSI1.680e-1446.48Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
M1AEQ6_SOLTU3.630e-1447.89Grave disease carrier protein n=9 Tax=Solanoideae ... [more]
A0A6P8E3J5_PUNGR4.020e-1446.48mitochondrial carrier protein CoAc1 isoform X2 n=1... [more]
A0A2P2IVN0_RHIMU6.760e-1447.89Mitochondrial substrate carrier family protein n=2... [more]
A0A218VS73_PUNGR1.000e-1346.48mitochondrial carrier protein CoAc1 isoform X1 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122118contigM-pyrifera_M_contig122118:176..418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog3988.XP_002516087.1
KEGG koko:K15084,ko:K15085
KEGG TC2.A.29.12.1,2.A.29.12.2
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGs37I1W@33090,3G78X@35493,4JJ3U@91835,KOG0752@1,KOG0752@2759
COG Functional cat.C
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size243
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.7769856-CDS-M-pyrifera_M_contig122118:175..4031622815740.7769856-CDS-M-pyrifera_M_contig122118:175..403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122118 176..403 -
1692277547.4536934-CDS-M-pyrifera_M_contig122118:175..4031692277547.4536934-CDS-M-pyrifera_M_contig122118:175..403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122118 176..403 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.7924423-UTR-M-pyrifera_M_contig122118:403..4181622815740.7924423-UTR-M-pyrifera_M_contig122118:403..418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122118 404..418 -
1692277547.4718606-UTR-M-pyrifera_M_contig122118:403..4181692277547.4718606-UTR-M-pyrifera_M_contig122118:403..418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122118 404..418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122118.4548.1prot_M-pyrifera_M_contig122118.4548.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122118 176..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122118.4548.1

>prot_M-pyrifera_M_contig122118.4548.1 ID=prot_M-pyrifera_M_contig122118.4548.1|Name=mRNA_M-pyrifera_M_contig122118.4548.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MQIEGLKLEKSYNYSYKGTWHALSTIVKTEGWRMLFRGLHINYLKVVPMV
SISFTLNDTLRRYFNLHTGGGVARR*
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mRNA from alignment at M-pyrifera_M_contig122118:176..418-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122118.4548.1 ID=mRNA_M-pyrifera_M_contig122118.4548.1|Name=mRNA_M-pyrifera_M_contig122118.4548.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig122118:176..418- (Macrocystis pyrifera P11B4 male)
GTGGTGAGGAGGAGGATGCAGATAGAGGGCCTCAAGCTGGAGAAGTCCTA
CAACTACAGCTACAAGGGCACCTGGCATGCCCTCAGTACCATCGTGAAGA
CAGAGGGCTGGAGAATGCTCTTCAGAGGGCTCCACATCAACTATCTCAAG
GTGGTGCCCATGGTCAGCATCAGCTTCACCCTCAACGACACACTCCGTCG
CTACTTCAACCTTCACACCGGCGGCGGTGTTGCTCGGCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122118:176..418-

>mRNA_M-pyrifera_M_contig122118.4548.1 ID=mRNA_M-pyrifera_M_contig122118.4548.1|Name=mRNA_M-pyrifera_M_contig122118.4548.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig122118:176..418- (Macrocystis pyrifera P11B4 male)
ATGCAGATAGAGGGCCTCAAGCTGGAGAAGTCCTACAACTACAGCTACAA
GGGCACCTGGCATGCCCTCAGTACCATCGTGAAGACAGAGGGCTGGAGAA
TGCTCTTCAGAGGGCTCCACATCAACTATCTCAAGGTGGTGCCCATGGTC
AGCATCAGCTTCACCCTCAACGACACACTCCGTCGCTACTTCAACCTTCA
CACCGGCGGCGGTGTTGCTCGGCGGTGAATGCAGATAGAGGGCCTCAAGC
TGGAGAAGTCCTACAACTACAGCTACAAGGGCACCTGGCATGCCCTCAGT
ACCATCGTGAAGACAGAGGGCTGGAGAATGCTCTTCAGAGGGCTCCACAT
CAACTATCTCAAGGTGGTGCCCATGGTCAGCATCAGCTTCACCCTCAACG
ACACACTCCGTCGCTACTTCAACCTTCACACCGGCGGCGGTGTTGCTCGG
CGGTGA
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