mRNA_M-pyrifera_M_contig122052.4544.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122052.4544.1
Unique NamemRNA_M-pyrifera_M_contig122052.4544.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: UPI00034583A6 (heliorhodopsin HeR n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034583A6)

HSP 1 Score: 224 bits (570), Expect = 2.300e-71
Identity = 106/140 (75.71%), Postives = 115/140 (82.14%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVNDPDRPTWWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLID 420
            LIAL+TGITD+AALIAIAFVN +MILFGWIMEMVN P    WWTPFWFG IAGI PW AI  YLV+N S +GA  PPTFVY I+ TIFV FN FA+NQWLQYR +G+W DYV GE VYIVLSL AKS LAWQIFANTLID
Sbjct:  132 LIALITGITDVAALIAIAFVNVSMILFGWIMEMVNVPGGERWWTPFWFGCIAGIGPWAAIVTYLVINSSIDGAATPPTFVYAIIATIFVFFNCFAINQWLQYRGIGKWKDYVFGETVYIVLSLTAKSALAWQIFANTLID 271          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: A0A520XNW7_9ACTN (Heliorhodopsin HeR n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XNW7_9ACTN)

HSP 1 Score: 213 bits (541), Expect = 6.300e-67
Identity = 99/143 (69.23%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVNDPD----RPTWWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLI 417
            LIA  TG+TDLA L+ +AF N +MILFGWIMEMVN+P       TWWTPFWFG IAGI PWVAI   L  N+S++GAEGPP FVYGI+V+IF  FN FA+NQWLQYR++G+W+DY+HGE  YI+LS VAKSVLAWQIFANTLI
Sbjct:  129 LIAATTGVTDLAGLLGLAFANISMILFGWIMEMVNNPTDGSGAKTWWTPFWFGCIAGIGPWVAILVPLWFNISQDGAEGPPGFVYGIIVSIFFFFNTFAINQWLQYRQVGKWSDYLHGERTYIILSFVAKSVLAWQIFANTLI 271          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: UPI0011B52778 (heliorhodopsin HeR n=1 Tax=Nesterenkonia sp. NBAIMH1 TaxID=2600320 RepID=UPI0011B52778)

HSP 1 Score: 206 bits (523), Expect = 4.150e-64
Identity = 96/151 (63.58%), Postives = 116/151 (76.82%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVNDP-----------DRPTWWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLID 420
            LI+L+ GI+D+AALI + F N AMILFGW+MEM N+                WWTPFWFG IAG APW+A AAYL++NV  EG EGPP FVYGI+V++FVLFNIFA+NQWLQY++LGRW DY+ GE  YIVLSLVAKS+LAWQ+FAN L+ 
Sbjct:  131 LISLLLGISDIAALIGVGFANVAMILFGWLMEMANNGLMHEKNGRSARGERAWWTPFWFGCIAGAAPWLAAAAYLIINVGIEGGEGPPGFVYGIIVSLFVLFNIFAVNQWLQYKQLGRWKDYLTGERTYIVLSLVAKSLLAWQVFANVLVS 281          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: UPI001B83606C (heliorhodopsin HeR n=1 Tax=Phycicoccus sp. BSK3Z-2 TaxID=2828860 RepID=UPI001B83606C)

HSP 1 Score: 203 bits (516), Expect = 4.900e-63
Identity = 100/150 (66.67%), Postives = 115/150 (76.67%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVND------PDRPT-----WWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLI 417
            LIALVTGITDLAAL+ +   N AMILFGW+MEM N+        RP      WWTPFWFG +AGI PW+AIA YL V +   G EGPP FV+GI+V++FVLFN FA+NQWLQYRR+GRW DY+ GE  Y+VLSLVAKSVLAWQIFANTLI
Sbjct:  131 LIALVTGITDLAALVGLGVANIAMILFGWLMEMSNNGLMHGRDARPVRGGRAWWTPFWFGCVAGIGPWLAIALYLWVTIGVNGGEGPPGFVWGIIVSLFVLFNTFAVNQWLQYRRVGRWRDYLFGERQYVVLSLVAKSVLAWQIFANTLI 280          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: UPI001C676371 (heliorhodopsin HeR n=1 Tax=Ornithinimicrobium laminariae TaxID=2864873 RepID=UPI001C676371)

HSP 1 Score: 203 bits (517), Expect = 7.850e-63
Identity = 97/150 (64.67%), Postives = 116/150 (77.33%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVND------PDRPT-----WWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLI 417
            L++LV GI+DLAALI IA  N +MILFGW+MEM N+         PT     WWTPFWFG +AG+ PW+ +A YL+VNV+ EG +GPP FVYGI+++IFV FN FALNQWLQYR++GRW DY+ GE  YIVLSLVAKSVLAWQIFAN LI
Sbjct:  160 LVSLVFGISDLAALIGIAVANISMILFGWLMEMSNNGLMHSKEGHPTRGERAWWTPFWFGCVAGVGPWLGVAGYLIVNVAVEGGQGPPAFVYGIIISIFVFFNSFALNQWLQYRQIGRWKDYLTGERTYIVLSLVAKSVLAWQIFANVLI 309          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: A0A2E0RRW0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RRW0_9ACTN)

HSP 1 Score: 202 bits (513), Expect = 1.240e-62
Identity = 94/140 (67.14%), Postives = 114/140 (81.43%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVNDPDRPTWWTPFWFGSIAGIAPWVAIAAYLVVNVSR-EGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLI 417
            +IA++TGITD+AAL+ IA  N AMILFGW+ME+VN P    WW+PFWFG IAG APW+AI A LV NV++ +G EGPP FVYGI+V+IFVLFN FA+NQWLQY+ +G+W DY+ GE  Y VLSLVAK+ LAWQIFAN LI
Sbjct:  138 IIAMITGITDMAALVVIAAANVAMILFGWVMEVVNPPGERVWWSPFWFGCIAGAAPWIAIVATLVYNVNQSDGGEGPPGFVYGIIVSIFVLFNCFAVNQWLQYKGVGKWRDYLVGERTYGVLSLVAKTALAWQIFANVLI 277          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: UPI00029B3A19 (heliorhodopsin HeR n=1 Tax=Dietzia alimentaria TaxID=665550 RepID=UPI00029B3A19)

HSP 1 Score: 197 bits (502), Expect = 6.250e-61
Identity = 91/150 (60.67%), Postives = 113/150 (75.33%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVN-----------DPDRPTWWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLI 417
            LI+L+ GI+D+AALI + F N +MILFGW+MEM N           D     WWTPFWFG IAGI PW+A A YL+VNV  EG +GPP FVYGI+V++FV FN FA+NQWLQY+++GRW +Y+ GE  YIVLSLVAKS+LAWQ+FAN L+
Sbjct:  131 LISLILGISDIAALIGLGFANISMILFGWLMEMTNNGLMHGKGERSDRGERAWWTPFWFGCIAGIGPWLAAATYLIVNVGIEGGDGPPGFVYGIIVSLFVFFNSFAINQWLQYKQVGRWQNYLTGERTYIVLSLVAKSLLAWQVFANVLV 280          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: A0A4R7HWF0_9ACTN (Uncharacterized protein n=2 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HWF0_9ACTN)

HSP 1 Score: 197 bits (501), Expect = 7.870e-61
Identity = 96/141 (68.09%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVNDPDRPT-WWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLID 420
            +IA +TGITD+AALIAIA  N AMILFGW+ME+VN PD  T WW PFWFG IAG APW+AIAA L   +++   EGPP FV+GILV++FVLFN FA+NQWLQY+R+G+W+DY+ GE  Y VLSLVAK+ LAWQIFAN LID
Sbjct:  138 IIATITGITDVAALIAIAAANIAMILFGWVMEVVNRPDTDTVWWGPFWFGCIAGAAPWIAIAANLGYAINKTD-EGPPAFVWGILVSLFVLFNCFAVNQWLQYKRVGKWSDYLVGERTYGVLSLVAKTALAWQIFANVLID 277          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: A0A3M0GID2_9ACTN (Uncharacterized protein n=1 Tax=Tessaracoccus antarcticus TaxID=2479848 RepID=A0A3M0GID2_9ACTN)

HSP 1 Score: 196 bits (499), Expect = 1.780e-60
Identity = 93/150 (62.00%), Postives = 112/150 (74.67%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVN-----------DPDRPTWWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLI 417
            LI+LV GI+D+AALI +   N +MILFGW+MEM N           D     WWTPFWFG IAGI PW+A A YL+VNV  +G EGPP FVYGI+V++FV FN FA+NQWLQY+++GRW DY+ GE  YIVLSLVAKS+LAWQ+FAN LI
Sbjct:  131 LISLVLGISDIAALIGLGIANVSMILFGWLMEMGNNGLMHGRHGRSDRGERAWWTPFWFGCIAGIGPWLAAAIYLIVNVGVKGGEGPPGFVYGIIVSLFVFFNSFAINQWLQYKQVGRWQDYLTGERTYIVLSLVAKSLLAWQVFANVLI 280          
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Match: A0A5D0XPF0_9MICC (Uncharacterized protein n=2 Tax=Arthrobacter TaxID=1663 RepID=A0A5D0XPF0_9MICC)

HSP 1 Score: 196 bits (498), Expect = 2.520e-60
Identity = 91/150 (60.67%), Postives = 116/150 (77.33%), Query Frame = 1
Query:    1 LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVN-----DPD-RP-----TWWTPFWFGSIAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWLQYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLI 417
            LI+L+ GI+D+AALI +   N +MILFGW+MEM N     D D RP      WWTPFWFG +AGI PW+A+A YL+VNV  EG EGPP FVYGI++++FV FN FA+NQWLQY+++GRW +Y+ GE  YIVLSL+AK++LAWQ+FAN LI
Sbjct:  131 LISLILGISDIAALIGLGIANISMILFGWLMEMTNNGLMHDADGRPQRGQRAWWTPFWFGCVAGIGPWLAVAVYLIVNVGVEGGEGPPGFVYGIIISLFVFFNSFAINQWLQYKQVGRWRNYLTGERTYIVLSLIAKTLLAWQVFANVLI 280          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122052.4544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00034583A62.300e-7175.71heliorhodopsin HeR n=1 Tax=Ilumatobacter nonamiens... [more]
A0A520XNW7_9ACTN6.300e-6769.23Heliorhodopsin HeR n=1 Tax=Acidimicrobiales bacter... [more]
UPI0011B527784.150e-6463.58heliorhodopsin HeR n=1 Tax=Nesterenkonia sp. NBAIM... [more]
UPI001B83606C4.900e-6366.67heliorhodopsin HeR n=1 Tax=Phycicoccus sp. BSK3Z-2... [more]
UPI001C6763717.850e-6364.67heliorhodopsin HeR n=1 Tax=Ornithinimicrobium lami... [more]
A0A2E0RRW0_9ACTN1.240e-6267.14Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI00029B3A196.250e-6160.67heliorhodopsin HeR n=1 Tax=Dietzia alimentaria Tax... [more]
A0A4R7HWF0_9ACTN7.870e-6168.09Uncharacterized protein n=2 Tax=Ilumatobacter flum... [more]
A0A3M0GID2_9ACTN1.780e-6062.00Uncharacterized protein n=1 Tax=Tessaracoccus anta... [more]
A0A5D0XPF0_9MICC2.520e-6060.67Uncharacterized protein n=2 Tax=Arthrobacter TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122052contigM-pyrifera_M_contig122052:107..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score194.5
Seed ortholog evalue3.3e-47
Seed eggNOG ortholog1077144.AGFF01000031_gene2886
Hectar predicted targeting categorysignal peptide
EggNOG OGs2I95D@201174,2ZB4E@2,arCOG06481@1
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.6331563-CDS-M-pyrifera_M_contig122052:106..5291622815740.6331563-CDS-M-pyrifera_M_contig122052:106..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122052 107..529 -
1692277547.3879678-CDS-M-pyrifera_M_contig122052:106..5291692277547.3879678-CDS-M-pyrifera_M_contig122052:106..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122052 107..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122052.4544.1prot_M-pyrifera_M_contig122052.4544.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122052 107..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122052.4544.1

>prot_M-pyrifera_M_contig122052.4544.1 ID=prot_M-pyrifera_M_contig122052.4544.1|Name=mRNA_M-pyrifera_M_contig122052.4544.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
LIALVTGITDLAALIAIAFVNAAMILFGWIMEMVNDPDRPTWWTPFWFGS
IAGIAPWVAIAAYLVVNVSREGAEGPPTFVYGILVTIFVLFNIFALNQWL
QYRRLGRWADYVHGEVVYIVLSLVAKSVLAWQIFANTLID*
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mRNA from alignment at M-pyrifera_M_contig122052:107..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122052.4544.1 ID=mRNA_M-pyrifera_M_contig122052.4544.1|Name=mRNA_M-pyrifera_M_contig122052.4544.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig122052:107..529- (Macrocystis pyrifera P11B4 male)
CTGATTGCGCTCGTCACCGGCATCACCGACCTCGCCGCGCTGATTGCCAT CGCCTTCGTCAATGCAGCGATGATCCTCTTCGGCTGGATCATGGAGATGG TCAACGACCCCGACCGACCGACCTGGTGGACCCCGTTCTGGTTCGGCTCG ATCGCCGGGATCGCCCCATGGGTCGCGATTGCCGCCTACCTCGTCGTGAA CGTCAGCCGTGAGGGCGCGGAAGGCCCGCCCACGTTCGTCTACGGGATCC TCGTGACGATCTTCGTGCTGTTCAACATCTTCGCTCTCAACCAGTGGCTG CAATACCGGCGACTCGGACGTTGGGCCGACTACGTCCACGGCGAGGTCGT CTACATCGTGCTGAGTCTCGTGGCCAAGAGCGTGCTGGCCTGGCAGATCT TCGCCAACACCCTGATCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122052:107..529-

>mRNA_M-pyrifera_M_contig122052.4544.1 ID=mRNA_M-pyrifera_M_contig122052.4544.1|Name=mRNA_M-pyrifera_M_contig122052.4544.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig122052:107..529- (Macrocystis pyrifera P11B4 male)
CTGATTGCGCTCGTCACCGGCATCACCGACCTCGCCGCGCTGATTGCCAT
CGCCTTCGTCAATGCAGCGATGATCCTCTTCGGCTGGATCATGGAGATGG
TCAACGACCCCGACCGACCGACCTGGTGGACCCCGTTCTGGTTCGGCTCG
ATCGCCGGGATCGCCCCATGGGTCGCGATTGCCGCCTACCTCGTCGTGAA
CGTCAGCCGTGAGGGCGCGGAAGGCCCGCCCACGTTCGTCTACGGGATCC
TCGTGACGATCTTCGTGCTGTTCAACATCTTCGCTCTCAACCAGTGGCTG
CAATACCGGCGACTCGGACGTTGGGCCGACTACGTCCACGGCGAGGTCGT
CTACATCGTGCTGAGTCTCGTGGCCAAGAGCGTGCTGGCCTGGCAGATCT
TCGCCAACACCCTGATCGACTGACTGATTGCGCTCGTCACCGGCATCACC
GACCTCGCCGCGCTGATTGCCATCGCCTTCGTCAATGCAGCGATGATCCT
CTTCGGCTGGATCATGGAGATGGTCAACGACCCCGACCGACCGACCTGGT
GGACCCCGTTCTGGTTCGGCTCGATCGCCGGGATCGCCCCATGGGTCGCG
ATTGCCGCCTACCTCGTCGTGAACGTCAGCCGTGAGGGCGCGGAAGGCCC
GCCCACGTTCGTCTACGGGATCCTCGTGACGATCTTCGTGCTGTTCAACA
TCTTCGCTCTCAACCAGTGGCTGCAATACCGGCGACTCGGACGTTGGGCC
GACTACGTCCACGGCGAGGTCGTCTACATCGTGCTGAGTCTCGTGGCCAA
GAGCGTGCTGGCCTGGCAGATCTTCGCCAACACCCTGATCGACTGA
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