mRNA_M-pyrifera_M_contig122039.4541.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122039.4541.1
Unique NamemRNA_M-pyrifera_M_contig122039.4541.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A2E7KLF4_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLF4_9PLAN)

HSP 1 Score: 322 bits (824), Expect = 3.850e-107
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 486
            GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF
Sbjct:  283 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 444          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A517QAR0_9PLAN (Fibronectin type-III domain-containing protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QAR0_9PLAN)

HSP 1 Score: 294 bits (752), Expect = 3.160e-96
Identity = 145/162 (89.51%), Postives = 156/162 (96.30%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 486
            GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMP+QLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGG++L+VGCVIATLA+FE++  P ++ +PT L+SAQTYI ENILGKGGF
Sbjct:  284 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPSQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGLLLLVGCVIATLASFESREPPPDKAKPTLLQSAQTYIIENILGKGGF 445          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A518IG86_9PLAN (Fibronectin type-III domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IG86_9PLAN)

HSP 1 Score: 286 bits (732), Expect = 1.450e-93
Identity = 139/162 (85.80%), Postives = 151/162 (93.21%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 486
            GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKL+GG++L+ GC+I TL+A E++    +++  T L+SAQ YIKENILGKGGF
Sbjct:  256 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLIGGLLLIAGCLIMTLSAIESRGVAPDEERKTFLQSAQAYIKENILGKGGF 417          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A3C0ARA1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0ARA1_9PLAN)

HSP 1 Score: 277 bits (708), Expect = 2.660e-93
Identity = 135/162 (83.33%), Postives = 147/162 (90.74%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 486
            GRPDEYNEDDIYYITDEQFGYVASVTGKMV DKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLS EPQQLGSLKGQDFGKL+GG++L+ GC+I TL++ +++    +  EPT L+SA  YI ENILGKGGF
Sbjct:   16 GRPDEYNEDDIYYITDEQFGYVASVTGKMVLDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSGEPQQLGSLKGQDFGKLIGGLLLIAGCLIMTLSSIQSRGVAPDNQEPTYLQSASNYIIENILGKGGF 177          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A2E2BWP7_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BWP7_9PLAN)

HSP 1 Score: 280 bits (715), Expect = 1.250e-92
Identity = 136/162 (83.95%), Postives = 148/162 (91.36%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 486
            GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLS EPQQLGSLKGQDFGKL+GG++L+ GC+I TL++ +++    +  EPT L+SA  YI ENILGKGGF
Sbjct:  135 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSGEPQQLGSLKGQDFGKLIGGLLLIAGCLIMTLSSIQSRGVAPDNQEPTYLQSASNYIIENILGKGGF 296          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A517VUA3_9PLAN (Fibronectin type-III domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VUA3_9PLAN)

HSP 1 Score: 282 bits (722), Expect = 5.150e-92
Identity = 140/166 (84.34%), Postives = 153/166 (92.17%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDE----PTSLESAQTYIKENILGKGGF 486
            GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLS EPQQLGSLKGQDFGK++GGI+L+ GC+I TL++FE+   P E+ +    PT L+SAQTY+K+NILGKGGF
Sbjct:  255 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSGEPQQLGSLKGQDFGKVIGGILLLAGCIIMTLSSFESAFDPKEKTQAESRPTFLQSAQTYLKDNILGKGGF 420          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A6CAP4_9PLAN (Fibronectin type-III domain-containing protein n=5 Tax=Gimesia TaxID=1649453 RepID=A6CAP4_9PLAN)

HSP 1 Score: 281 bits (720), Expect = 1.000e-91
Identity = 136/162 (83.95%), Postives = 150/162 (92.59%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 486
            GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQ+AGTAMPTQLPFFVAACDFTLIGEEFFAASAYLS EPQQLGSLKGQDFGKLVGG++LV GC+I T+++ +++  P + +EPT L+SA  YI +NILGKGGF
Sbjct:  257 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQIAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSGEPQQLGSLKGQDFGKLVGGLLLVAGCLIMTVSSIQSRGVPPDNEEPTYLQSASNYIIQNILGKGGF 418          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A517ZBD5_9PLAN (Fibronectin type-III domain-containing protein n=2 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZBD5_9PLAN)

HSP 1 Score: 232 bits (592), Expect = 1.790e-72
Identity = 117/163 (71.78%), Postives = 133/163 (81.60%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQT-YIKENILGKGGF 486
            GRPD +NEDDIYY+TDEQFGYVA VTGKMVRDKPAACFYMGAFYAESL+LAETGN+VGAIQVAGTAMP+QLPFFVAACD+TLIGEEFFAASAYLS EP QLG+L+GQD GKL+GG +L+VGC + T+A F           P    +A   +IK +ILG  GF
Sbjct:  262 GRPDSFNEDDIYYLTDEQFGYVAGVTGKMVRDKPAACFYMGAFYAESLLLAETGNAVGAIQVAGTAMPSQLPFFVAACDYTLIGEEFFAASAYLSGEPFQLGTLRGQDVGKLLGGALLLVGCTVMTIAVFN----------PDGTAAAIAGFIKNHILGGAGF 414          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A2E5E8F5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5E8F5_9BACT)

HSP 1 Score: 231 bits (590), Expect = 1.200e-71
Identity = 116/162 (71.60%), Postives = 132/162 (81.48%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 486
            GRPD YNED+IYY+TDEQFGY A V G MVR+KPAACFYMGAFYAESLILAET NS+GAIQVAGTAMP+QLPFFVAACD+TLIGEEFFAASAYLS +P+QLGSLKGQD GK+V  I+L++GCV+ATLA       P        L  A+ YIK+NILG+ G 
Sbjct:  276 GRPDAYNEDNIYYLTDEQFGYTAGVQGVMVREKPAACFYMGAFYAESLILAETANSIGAIQVAGTAMPSQLPFFVAACDYTLIGEEFFAASAYLSNDPEQLGSLKGQDVGKIVAAILLILGCVLATLATVVPTNKP--------LLMAEMYIKDNILGEDGL 429          
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Match: A0A7W0MD23_9PLAN (Fibronectin type III domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0MD23_9PLAN)

HSP 1 Score: 226 bits (576), Expect = 4.560e-70
Identity = 109/162 (67.28%), Postives = 133/162 (82.10%), Query Frame = 1
Query:    1 GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLILAETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQLGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQTYIKENILGKGGF 486
            GRP+ YN DDIYY+TDEQFG+ A  TG+M+R+KPAACFYMGAFYAESLILAETGNS+GAIQVAGTAMP+QLPFF+AACD+TLIGEEFFAASAYLS EPQQLGSLKGQD GK+V G+++++GCV+AT+ +  +    AE       E  + Y+ +N+LG  G 
Sbjct:  250 GRPESYNADDIYYLTDEQFGFAAGATGQMMREKPAACFYMGAFYAESLILAETGNSIGAIQVAGTAMPSQLPFFIAACDYTLIGEEFFAASAYLSGEPQQLGSLKGQDSGKIVAGVLIILGCVLATVLSVTSHGEAAETATGAISEIFE-YLHDNVLGDEGL 410          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122039.4541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KLF4_9PLAN3.850e-107100.00Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A517QAR0_9PLAN3.160e-9689.51Fibronectin type-III domain-containing protein n=3... [more]
A0A518IG86_9PLAN1.450e-9385.80Fibronectin type-III domain-containing protein n=2... [more]
A0A3C0ARA1_9PLAN2.660e-9383.33Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E2BWP7_9PLAN1.250e-9283.95Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517VUA3_9PLAN5.150e-9284.34Fibronectin type-III domain-containing protein n=2... [more]
A6CAP4_9PLAN1.000e-9183.95Fibronectin type-III domain-containing protein n=5... [more]
A0A517ZBD5_9PLAN1.790e-7271.78Fibronectin type-III domain-containing protein n=2... [more]
A0A2E5E8F5_9BACT1.200e-7171.60Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A7W0MD23_9PLAN4.560e-7067.28Fibronectin type III domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122039contigM-pyrifera_M_contig122039:42..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score285.8
Seed ortholog evalue1.3e-74
Seed eggNOG ortholog344747.PM8797T_23691
Hectar predicted targeting categoryother localisation
EggNOG OGs28MEN@1,2IZ1H@203682,2ZASA@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size489
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.5213954-CDS-M-pyrifera_M_contig122039:41..5301622815740.5213954-CDS-M-pyrifera_M_contig122039:41..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122039 42..530 -
1692277547.3522356-CDS-M-pyrifera_M_contig122039:41..5301692277547.3522356-CDS-M-pyrifera_M_contig122039:41..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122039 42..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122039.4541.1prot_M-pyrifera_M_contig122039.4541.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122039 42..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122039.4541.1

>prot_M-pyrifera_M_contig122039.4541.1 ID=prot_M-pyrifera_M_contig122039.4541.1|Name=mRNA_M-pyrifera_M_contig122039.4541.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
GRPDEYNEDDIYYITDEQFGYVASVTGKMVRDKPAACFYMGAFYAESLIL
AETGNSVGAIQVAGTAMPTQLPFFVAACDFTLIGEEFFAASAYLSREPQQ
LGSLKGQDFGKLVGGIVLVVGCVIATLAAFEAKAAPAEQDEPTSLESAQT
YIKENILGKGGF*
back to top

mRNA from alignment at M-pyrifera_M_contig122039:42..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122039.4541.1 ID=mRNA_M-pyrifera_M_contig122039.4541.1|Name=mRNA_M-pyrifera_M_contig122039.4541.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig122039:42..530- (Macrocystis pyrifera P11B4 male)
GGTCGTCCTGATGAATACAACGAAGACGATATCTACTACATCACCGACGA ACAGTTTGGTTATGTCGCCAGCGTGACTGGCAAAATGGTGCGCGACAAAC CTGCTGCCTGTTTCTATATGGGTGCGTTTTACGCCGAGTCCCTGATTCTG GCAGAAACCGGAAACTCGGTCGGCGCGATTCAGGTCGCCGGCACAGCCAT GCCGACTCAGCTCCCCTTCTTCGTCGCTGCCTGTGACTTCACTTTGATCG GCGAAGAGTTCTTCGCCGCTTCCGCTTACCTGTCACGGGAACCTCAGCAG TTGGGGAGTCTCAAGGGACAGGACTTCGGCAAGCTGGTGGGAGGCATCGT GCTGGTCGTTGGCTGCGTGATTGCCACTCTTGCTGCCTTTGAAGCAAAAG CAGCTCCTGCAGAACAGGACGAACCGACTTCCCTGGAGTCAGCTCAGACC TACATCAAAGAGAACATCCTCGGTAAGGGAGGTTTTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122039:42..530-

>mRNA_M-pyrifera_M_contig122039.4541.1 ID=mRNA_M-pyrifera_M_contig122039.4541.1|Name=mRNA_M-pyrifera_M_contig122039.4541.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig122039:42..530- (Macrocystis pyrifera P11B4 male)
GGTCGTCCTGATGAATACAACGAAGACGATATCTACTACATCACCGACGA
ACAGTTTGGTTATGTCGCCAGCGTGACTGGCAAAATGGTGCGCGACAAAC
CTGCTGCCTGTTTCTATATGGGTGCGTTTTACGCCGAGTCCCTGATTCTG
GCAGAAACCGGAAACTCGGTCGGCGCGATTCAGGTCGCCGGCACAGCCAT
GCCGACTCAGCTCCCCTTCTTCGTCGCTGCCTGTGACTTCACTTTGATCG
GCGAAGAGTTCTTCGCCGCTTCCGCTTACCTGTCACGGGAACCTCAGCAG
TTGGGGAGTCTCAAGGGACAGGACTTCGGCAAGCTGGTGGGAGGCATCGT
GCTGGTCGTTGGCTGCGTGATTGCCACTCTTGCTGCCTTTGAAGCAAAAG
CAGCTCCTGCAGAACAGGACGAACCGACTTCCCTGGAGTCAGCTCAGACC
TACATCAAAGAGAACATCCTCGGTAAGGGAGGTTTTTAAGGTCGTCCTGA
TGAATACAACGAAGACGATATCTACTACATCACCGACGAACAGTTTGGTT
ATGTCGCCAGCGTGACTGGCAAAATGGTGCGCGACAAACCTGCTGCCTGT
TTCTATATGGGTGCGTTTTACGCCGAGTCCCTGATTCTGGCAGAAACCGG
AAACTCGGTCGGCGCGATTCAGGTCGCCGGCACAGCCATGCCGACTCAGC
TCCCCTTCTTCGTCGCTGCCTGTGACTTCACTTTGATCGGCGAAGAGTTC
TTCGCCGCTTCCGCTTACCTGTCACGGGAACCTCAGCAGTTGGGGAGTCT
CAAGGGACAGGACTTCGGCAAGCTGGTGGGAGGCATCGTGCTGGTCGTTG
GCTGCGTGATTGCCACTCTTGCTGCCTTTGAAGCAAAAGCAGCTCCTGCA
GAACAGGACGAACCGACTTCCCTGGAGTCAGCTCAGACCTACATCAAAGA
GAACATCCTCGGTAAGGGAGGTTTTTAA
back to top