mRNA_M-pyrifera_M_contig122037.4540.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122037.4540.1
Unique NamemRNA_M-pyrifera_M_contig122037.4540.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A813BE96_9DINO (ABCA1 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A813BE96_9DINO)

HSP 1 Score: 115 bits (289), Expect = 7.030e-27
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  160 ELRSFLRSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            +L  FLRS++L PQ+  + PFP  ++    FY +A NVF++ FVL FFYPVS++I A+V EKE+RI+EGMRMMG+   AL  AW L+YFL F V +FG   + S NM+  S+
Sbjct:  326 KLLDFLRSHSLSPQQATLVPFPTASYYATTFYTLASNVFSLSFVLFFFYPVSQMIAAVVHEKESRIKEGMRMMGIPSGALTAAWYLSYFLAFLVCSFGIASIASKNMFGRSD 437          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A5A8CLJ1_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLJ1_CAFRO)

HSP 1 Score: 115 bits (289), Expect = 7.110e-27
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  160 ELRSFLRSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            +L  FLRS++L PQ+  + PFP  ++    FY +A NVF++ FVL FFYPVS++I A+V EKE+RI+EGMRMMG+   AL  AW L+YFL F V +FG   + S NM+  S+
Sbjct:  326 KLLDFLRSHSLSPQQATLVPFPTASYYATTFYTLASNVFSLSFVLFFFYPVSQMIAAVVHEKESRIKEGMRMMGIPSGALTAAWYLSYFLAFLVCSFGIASIASKNMFGRSD 437          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A7S1CDP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDP5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.460e-24
Identity = 64/175 (36.57%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   10 PGFAALQTAVDRFILNATTLPLVDSVQEPT----IEAFKLQWNCSYTNKPHLDDELRS---------FLRSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            PGF ++Q A+DR+I+N T   L     + T    +    L     Y N   L   L +           RS    PQ V   PFP+  +  N FY  A+ +FA+FFV+ F  P  RLIR +V EKET+IREGM+MMGM   +L  AW + Y ++F ++A G T V +  ++  S+
Sbjct:  260 PGFMSVQAALDRYIVNRTDEKLASGYADRTALYLVCVEYLNRTAPYLNLTQLAKSLETHNGAMAALNLSRSAMYAPQHVAAVPFPIHGYQSNSFYGAAKGIFALFFVVTFLLPAFRLIRGIVHEKETKIREGMKMMGMGDMSLFLAWYITYGVIFLLIAVGVTAVSAPGIFSHSS 434          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A7S1CPC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPC4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.240e-22
Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = 1
Query:    7 VPGFAALQTAVDRFILNA----------TTLPLVDS-----VQEPTIEAFKLQWNCSYTNKPHLDDELRSFLRSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            +P F  +QTAVDR I+ A          TTL  V S     + +P+I+ +      S+  + +   E   F+R   + PQ      FPV  F++N FY +A+NV     ++ F  PV RL   LV EKET+IREGMRMMG++  AL T+W + YFL+FFV+A   T + +  ++  S+
Sbjct:  235 LPSFIEVQTAVDRAIIGAPMDPRLPSYNTTLVTVGSNLAYMLGDPSIDFY------SFFQEHYALAE--RFMRPALMAPQAFSSTTFPVREFEDNEFYGVAKNVLPFVMLIAFMQPVIRLTLGLVIEKETKIREGMRMMGLSDFALFTSWYVTYFLMFFVIALSLTAIGAAGLFQHSS 404          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A2R5G3S3_9STRA (ATP-binding cassette sub-family A member 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3S3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.940e-20
Identity = 63/186 (33.87%), Postives = 87/186 (46.77%), Query Frame = 1
Query:    1 YAVPGFAALQTAVDRFILN----------ATTLPLVDSVQEPT---IEAFKLQWNCSYTNKPHLDDELRSF--------LRSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            Y + GF  LQ AVDR I+N          A  L  V    +P    +  +         N  HL DE   F               P  V +A FP     + PFY   +NVF +  VL F +P+SRL+R +V EKETR REGMRMMG+   AL  +W + Y  +FFV++   T +   +++  S+
Sbjct:  344 YMMSGFLTLQQAVDRVIINQPLGSDREVRALALRQVCDAFDPLRSLVSKYLPPHTLDGVNCSHLLDEFLDFQDIDLGPLTDPVRFAPNNVRMAEFPTPEMVDKPFYRKIKNVFGLDLVLTFLWPISRLVRGIVHEKETRAREGMRMMGLQYSALYWSWFITYGAIFFVISAAITGIAQAHLFSSSD 529          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A5A8C059_CAFRO (Uncharacterized protein n=7 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C059_CAFRO)

HSP 1 Score: 95.5 bits (236), Expect = 9.170e-20
Identity = 59/183 (32.24%), Postives = 87/183 (47.54%), Query Frame = 1
Query:    7 VPGFAALQTAVDRFILNATTLPL-----------------VDSVQEPTIEAFKLQWNCSYTNKPHLDDELRSFLR---SYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            +P F+ LQ  VDRFILN++                     + +V        K     + TN P     L SFL    S    P  +    FP+  F+ N F+A+ QN+F  FF+L   +PV+ L+R +V EKE R+RE ++MMG+   AL  +WI+ Y L+F + A   T      M+  S+
Sbjct:  222 LPSFSTLQLEVDRFILNSSAXXXXXXXXXXXXXXXXXXXXMAAVMPQIAAEIKAITAAAQTNPPGAAASLSSFLSWMGSERFAPNSLSFVAFPILGFETNGFFAVVQNIFPFFFILTQLFPVAMLLRGIVSEKELRLREALKMMGVDSAALTFSWIVQYILIFCIQAALSTAAGGGTMFKASD 404          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A1Y1HQP2_KLENI (ABC transporter A family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HQP2_KLENI)

HSP 1 Score: 92.0 bits (227), Expect = 1.480e-18
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    1 YAVPGFAALQTAVDRFILNATTLPLVDSVQEPTIEAFKLQWNCSYTNKPHLDDELRSFLRSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            YA+ GF  LQ  VD +I+ +       S ++        +  CS           RSF   +NL P+ V VAPFP   + ++ F AIA+ V A+ ++L F +P+SRL+R +V EKE R++EGM MMGMT  A+ TAW++ Y + F V +   T V   +++  S+
Sbjct:  206 YALSGFLTLQQVVDSYIIFS-------SQEDSACRGAPSRLLCS-----------RSF--HWNL-PEHVAVAPFPTPGYTDDSFQAIAKKVMAVLYLLGFMFPISRLLRHMVLEKEDRLKEGMAMMGMTDTAVNTAWLITYGVQFGVTSAVITAVTWSSLFAHSD 349          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A7S2S251_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S251_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.740e-17
Identity = 58/188 (30.85%), Postives = 92/188 (48.94%), Query Frame = 1
Query:    1 YAVPGFAALQTAVDRFILNATT-------------------LPLV----DSVQEPTIEAFK-LQWNCSYTNKPHLDDELRSFLRSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLS 492
            YA  GF  LQ  VDR I+N                      +P++    +  ++  I+AF  + W    +N   + D L    +  + +P    +  FP  A+   PFY   + VFA+  +L F +P+SRLIR +V EKET++REGMRMMG+   +L  +W L Y  +FFV++     +   +++  S
Sbjct:  260 YATSGFLTLQQTVDRVIVNKKMKRSGSHIQKLALRQYCDVFMPILKEFFNETKQRVIDAFDCMNW---LSNVSAMLD-LSPLTKPVSYIPNDARMTEFPTPAYTSRPFYDKIKAVFALDLILTFLWPISRLIRGIVHEKETKMREGMRMMGLNYSSLYLSWFLTYGFIFFVISLVIAVISQGSLFARS 443          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A812VGT5_9DINO (ABCA1 protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812VGT5_9DINO)

HSP 1 Score: 81.6 bits (200), Expect = 2.570e-16
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  178 RSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            R   +LP  V   PFP  A+ ++PF      VF +FFVL F +P++R+I++LV++KE RI E M+MMGM  EA+   W L Y +L+ + A   T +    ++  SN
Sbjct:   31 RLSGILPVSVREIPFPTIAYLDDPFATFVSAVFGLFFVLVFIWPLTRIIKSLVEDKEARINEVMKMMGMPAEAITFGWYLTYGILWLIPAALMTIICWGTVFQHSN 136          
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Match: A0A812KVS4_SYMMI (ABCA1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812KVS4_SYMMI)

HSP 1 Score: 81.6 bits (200), Expect = 6.800e-16
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  178 RSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCFFYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAFGCTFVVSHNMYPLSN 495
            R   +LP  V   PFP  A+ ++PF      VF +FFVL F +P++R+I++LV++KE RI E M+MMGM  EA+   W L Y +L+ + A   T +    ++  SN
Sbjct:  114 RLSGILPVSVREIPFPTIAYLDDPFATFVSAVFGLFFVLVFIWPLTRIIKSLVEDKEARINEVMKMMGMPAEAITFGWYLTYGILWLIPAALMTIICWGTVFQHSN 219          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122037.4540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BE96_9DINO7.030e-2750.89ABCA1 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A8... [more]
A0A5A8CLJ1_CAFRO7.110e-2750.89Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S1CDP5_9STRA1.460e-2436.57Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1CPC4_9STRA3.240e-2237.08Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2R5G3S3_9STRA5.940e-2033.87ATP-binding cassette sub-family A member 1 n=1 Tax... [more]
A0A5A8C059_CAFRO9.170e-2032.24Uncharacterized protein n=7 Tax=Cafeteria roenberg... [more]
A0A1Y1HQP2_KLENI1.480e-1836.36ABC transporter A family n=1 Tax=Klebsormidium nit... [more]
A0A7S2S251_9STRA1.740e-1730.85Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A812VGT5_9DINO2.570e-1639.62ABCA1 protein (Fragment) n=1 Tax=Symbiodinium necr... [more]
A0A812KVS4_SYMMI6.800e-1639.62ABCA1 protein n=1 Tax=Symbiodinium microadriaticum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122037contigM-pyrifera_M_contig122037:9..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue7.4e-14
Seed eggNOG ortholog42099.EPrPV00000021382
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
EggNOG free text desc.ATP-binding Cassette (ABC) Superfamily. Source PGD
EggNOG OGs1MD79@121069,COG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.486767-CDS-M-pyrifera_M_contig122037:8..5031622815740.486767-CDS-M-pyrifera_M_contig122037:8..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122037 9..503 -
1692277547.329246-CDS-M-pyrifera_M_contig122037:8..5031692277547.329246-CDS-M-pyrifera_M_contig122037:8..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122037 9..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122037.4540.1prot_M-pyrifera_M_contig122037.4540.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122037 9..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122037.4540.1

>prot_M-pyrifera_M_contig122037.4540.1 ID=prot_M-pyrifera_M_contig122037.4540.1|Name=mRNA_M-pyrifera_M_contig122037.4540.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
YAVPGFAALQTAVDRFILNATTLPLVDSVQEPTIEAFKLQWNCSYTNKPH
LDDELRSFLRSYNLLPQRVEVAPFPVTAFDENPFYAIAQNVFAIFFVLCF
FYPVSRLIRALVDEKETRIREGMRMMGMTQEALATAWILAYFLLFFVVAF
GCTFVVSHNMYPLSN
back to top

mRNA from alignment at M-pyrifera_M_contig122037:9..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122037.4540.1 ID=mRNA_M-pyrifera_M_contig122037.4540.1|Name=mRNA_M-pyrifera_M_contig122037.4540.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig122037:9..503- (Macrocystis pyrifera P11B4 male)
TACGCCGTTCCAGGATTCGCTGCTCTTCAAACTGCTGTTGATCGATTCAT CCTCAACGCGACGACTCTGCCTTTGGTAGATTCGGTGCAAGAACCAACGA TTGAAGCTTTCAAACTGCAGTGGAATTGCTCCTACACCAACAAGCCCCAC TTGGATGACGAACTTCGCAGTTTTCTTCGATCCTACAATCTTCTCCCACA ACGTGTGGAAGTGGCTCCGTTCCCAGTGACTGCTTTCGATGAGAATCCAT TCTATGCGATTGCTCAAAATGTGTTTGCCATCTTCTTCGTACTTTGCTTC TTCTACCCCGTTTCCAGACTTATCCGTGCACTTGTGGATGAGAAAGAGAC GCGGATCCGCGAAGGCATGCGAATGATGGGCATGACGCAAGAAGCACTTG CTACAGCATGGATCCTTGCTTACTTCCTTCTCTTCTTCGTGGTCGCATTT GGGTGCACATTTGTGGTTTCACACAACATGTATCCACTTTCGAAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122037:9..503-

>mRNA_M-pyrifera_M_contig122037.4540.1 ID=mRNA_M-pyrifera_M_contig122037.4540.1|Name=mRNA_M-pyrifera_M_contig122037.4540.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig122037:9..503- (Macrocystis pyrifera P11B4 male)
TACGCCGTTCCAGGATTCGCTGCTCTTCAAACTGCTGTTGATCGATTCAT
CCTCAACGCGACGACTCTGCCTTTGGTAGATTCGGTGCAAGAACCAACGA
TTGAAGCTTTCAAACTGCAGTGGAATTGCTCCTACACCAACAAGCCCCAC
TTGGATGACGAACTTCGCAGTTTTCTTCGATCCTACAATCTTCTCCCACA
ACGTGTGGAAGTGGCTCCGTTCCCAGTGACTGCTTTCGATGAGAATCCAT
TCTATGCGATTGCTCAAAATGTGTTTGCCATCTTCTTCGTACTTTGCTTC
TTCTACCCCGTTTCCAGACTTATCCGTGCACTTGTGGATGAGAAAGAGAC
GCGGATCCGCGAAGGCATGCGAATGATGGGCATGACGCAAGAAGCACTTG
CTACAGCATGGATCCTTGCTTACTTCCTTCTCTTCTTCGTGGTCGCATTT
GGGTGCACATTTGTGGTTTCACACAACATGTATCCACTTTCGAATTACGC
CGTTCCAGGATTCGCTGCTCTTCAAACTGCTGTTGATCGATTCATCCTCA
ACGCGACGACTCTGCCTTTGGTAGATTCGGTGCAAGAACCAACGATTGAA
GCTTTCAAACTGCAGTGGAATTGCTCCTACACCAACAAGCCCCACTTGGA
TGACGAACTTCGCAGTTTTCTTCGATCCTACAATCTTCTCCCACAACGTG
TGGAAGTGGCTCCGTTCCCAGTGACTGCTTTCGATGAGAATCCATTCTAT
GCGATTGCTCAAAATGTGTTTGCCATCTTCTTCGTACTTTGCTTCTTCTA
CCCCGTTTCCAGACTTATCCGTGCACTTGTGGATGAGAAAGAGACGCGGA
TCCGCGAAGGCATGCGAATGATGGGCATGACGCAAGAAGCACTTGCTACA
GCATGGATCCTTGCTTACTTCCTTCTCTTCTTCGTGGTCGCATTTGGGTG
CACATTTGTGGTTTCACACAACATGTATCCACTTTCGAAT
back to top