mRNA_M-pyrifera_M_contig122015.4532.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122015.4532.1
Unique NamemRNA_M-pyrifera_M_contig122015.4532.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122015.4532.1 vs. uniprot
Match: A0A7X7TC61_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7X7TC61_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 2.460e-13
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   19 DYEPSSDHYANLVSSLQWMALQNANDQEANVILLPAWPCAWDADVKLVASKATTISFSVRNGTLSNLQVQPPQRTQQVKVLPCQ 270
            D+ P  DH   L+ + Q M +Q   D +A + LLPAWP  WDAD KL A   T +  SVR G + NLQV PPQR + V++L  Q
Sbjct:   15 DWVPDQDHGGVLMKAAQSMLMQC--DGKA-IYLLPAWPKQWDADFKLHAPYKTVVQGSVRGGKIKNLQVDPPQRREDVQILETQ 95
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BLAST of mRNA_M-pyrifera_M_contig122015.4532.1 vs. uniprot
Match: A0A1H8WXZ9_9SPHI (Uncharacterized protein n=1 Tax=Mucilaginibacter sp. OK283 TaxID=1881049 RepID=A0A1H8WXZ9_9SPHI)

HSP 1 Score: 62.4 bits (150), Expect = 2.450e-9
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   19 DYEPSSDHYANLVSSLQWMALQNANDQEANVILLPAWPCAWDADVKLVASKATTISFSVRNGTLSNLQVQPPQR 240
            DY P  D+  N  + LQ M +Q  N ++  ++LLPAWP AWDAD KL A   TT+   V NG L NL+V P  R
Sbjct:  634 DYMPDEDNGGNGENGLQQMLMQ-VNGKK--IMLLPAWPAAWDADFKLNAPYNTTVEGRVENGKLINLKVSPESR 704
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BLAST of mRNA_M-pyrifera_M_contig122015.4532.1 vs. uniprot
Match: A0A402CZA9_9BACT (DUF5703_N domain-containing protein n=2 Tax=Capsulimonas corticalis TaxID=2219043 RepID=A0A402CZA9_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-6
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:   19 DYEPSSDHYANLVSSLQWMALQNANDQEANVILLPAWPCAWDADVKLVASKATTISFSVRNGTLSNLQVQPPQRTQQV 252
            D+ P  +H  NL+ + Q M LQ   ++   ++LLPAWP AWD   KL A + T +    R+G +  L V P  R + +
Sbjct:  687 DWLPDQNHGGNLLETTQLMLLQPVGNK---ILLLPAWPEAWDVHFKLHAPQRTLVECVYRSGRIERLSVSPHSRRKDI 761
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BLAST of mRNA_M-pyrifera_M_contig122015.4532.1 vs. uniprot
Match: A0A150UWD7_9PEZI (DUF5703_N domain-containing protein n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150UWD7_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-6
Identity = 28/78 (35.90%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:   19 DYEPSSDHYANLVSSLQWMALQNANDQEANVILLPAWPCAWDADVKLVASKATTISFSVRNGTLSNLQVQPPQRTQQV 252
            D+ P  D     + +LQ M LQ   +    + ++PAWP  W A+ KL A   TT+  SV+ G L +L + PP+R   V
Sbjct:  699 DWTPQMDTGGTGMIALQDMLLQTYGNSSRTIRVVPAWPANWTAEFKLRAPFNTTVEGSVQGGKLISLNIDPPERKNDV 776
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BLAST of mRNA_M-pyrifera_M_contig122015.4532.1 vs. uniprot
Match: A0A7L5A277_9BACT (DUF5703_N domain-containing protein n=2 Tax=Hymenobacter busanensis TaxID=2607656 RepID=A0A7L5A277_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 4.410e-6
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:   19 DYEPSSDHYANLVSSLQWMALQNANDQEANVILLPAWPCAWDADVKLVASKATTISFSVRNGTLSNLQVQPPQRTQQVKVL 261
            D+ P  +   + +  LQ M LQ     +  ++LLPAWP AWD   KL A   TT+  +V+NG ++ L V P  R   V+VL
Sbjct:  696 DWAPDHNWGGSGMIGLQEMLLQT---HDRKILLLPAWPRAWDVHFKLHAPYQTTVECTVQNGKVTQLLVTPEFRRADVEVL 773
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BLAST of mRNA_M-pyrifera_M_contig122015.4532.1 vs. uniprot
Match: A0A5R8WL94_9BACT (DUF5703_N domain-containing protein n=2 Tax=Hymenobacter jeollabukensis TaxID=2025313 RepID=A0A5R8WL94_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 6.030e-6
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:   19 DYEPSSDHYANLVSSLQWMALQNANDQEANVILLPAWPCAWDADVKLVASKATTISFSVRNGTLSNLQVQPPQRTQQVKV 258
            D+ P  +     +  LQ M LQ A   +  ++LLPAWP AWD   KL A   TT+  +V+NG ++ L V P  R   V+V
Sbjct:  708 DWAPDHNWGGAGMIGLQEMLLQTA---DRKILLLPAWPRAWDVHFKLHAPYQTTVECTVQNGKVTQLLVTPEARRADVEV 784
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122015.4532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7X7TC61_9BACT2.460e-1346.43Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A1H8WXZ9_9SPHI2.450e-947.30Uncharacterized protein n=1 Tax=Mucilaginibacter s... [more]
A0A402CZA9_9BACT1.260e-635.90DUF5703_N domain-containing protein n=2 Tax=Capsul... [more]
A0A150UWD7_9PEZI1.730e-635.90DUF5703_N domain-containing protein n=1 Tax=Acidom... [more]
A0A7L5A277_9BACT4.410e-638.27DUF5703_N domain-containing protein n=2 Tax=Hymeno... [more]
A0A5R8WL94_9BACT6.030e-638.75DUF5703_N domain-containing protein n=2 Tax=Hymeno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122015contigM-pyrifera_M_contig122015:257..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue9.7e-08
Seed eggNOG ortholog1229276.DI53_1163
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydrolase, family 65, central catalytic
EggNOG OGs1IPI9@117747,4NHVP@976,COG1554@1,COG1554@2
COG Functional cat.G
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.1734333-CDS-M-pyrifera_M_contig122015:256..5291622815740.1734333-CDS-M-pyrifera_M_contig122015:256..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122015 257..529 -
1692277547.2107234-CDS-M-pyrifera_M_contig122015:256..5291692277547.2107234-CDS-M-pyrifera_M_contig122015:256..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122015 257..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122015.4532.1prot_M-pyrifera_M_contig122015.4532.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122015 257..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122015.4532.1

>prot_M-pyrifera_M_contig122015.4532.1 ID=prot_M-pyrifera_M_contig122015.4532.1|Name=mRNA_M-pyrifera_M_contig122015.4532.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
FGPHEQDYEPSSDHYANLVSSLQWMALQNANDQEANVILLPAWPCAWDAD
VKLVASKATTISFSVRNGTLSNLQVQPPQRTQQVKVLPCQ*
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mRNA from alignment at M-pyrifera_M_contig122015:257..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122015.4532.1 ID=mRNA_M-pyrifera_M_contig122015.4532.1|Name=mRNA_M-pyrifera_M_contig122015.4532.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig122015:257..529- (Macrocystis pyrifera P11B4 male)
TTTGGACCACACGAACAAGACTACGAACCTTCCTCCGACCACTATGCCAA
CCTCGTCTCCTCACTCCAGTGGATGGCCCTCCAGAACGCAAACGACCAAG
AAGCCAACGTCATCCTCCTCCCAGCTTGGCCCTGCGCTTGGGATGCAGAC
GTCAAACTAGTCGCTTCAAAGGCCACAACCATCTCCTTCTCCGTACGAAA
CGGAACCCTCTCCAACCTCCAAGTCCAACCCCCTCAAAGAACACAACAAG
TCAAAGTCCTTCCATGCCAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122015:257..529-

>mRNA_M-pyrifera_M_contig122015.4532.1 ID=mRNA_M-pyrifera_M_contig122015.4532.1|Name=mRNA_M-pyrifera_M_contig122015.4532.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig122015:257..529- (Macrocystis pyrifera P11B4 male)
TTTGGACCACACGAACAAGACTACGAACCTTCCTCCGACCACTATGCCAA
CCTCGTCTCCTCACTCCAGTGGATGGCCCTCCAGAACGCAAACGACCAAG
AAGCCAACGTCATCCTCCTCCCAGCTTGGCCCTGCGCTTGGGATGCAGAC
GTCAAACTAGTCGCTTCAAAGGCCACAACCATCTCCTTCTCCGTACGAAA
CGGAACCCTCTCCAACCTCCAAGTCCAACCCCCTCAAAGAACACAACAAG
TCAAAGTCCTTCCATGCCAGTGATTTGGACCACACGAACAAGACTACGAA
CCTTCCTCCGACCACTATGCCAACCTCGTCTCCTCACTCCAGTGGATGGC
CCTCCAGAACGCAAACGACCAAGAAGCCAACGTCATCCTCCTCCCAGCTT
GGCCCTGCGCTTGGGATGCAGACGTCAAACTAGTCGCTTCAAAGGCCACA
ACCATCTCCTTCTCCGTACGAAACGGAACCCTCTCCAACCTCCAAGTCCA
ACCCCCTCAAAGAACACAACAAGTCAAAGTCCTTCCATGCCAGTGA
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