mRNA_M-pyrifera_M_contig121991.4521.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121991.4521.1
Unique NamemRNA_M-pyrifera_M_contig121991.4521.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: E8Z6B9_PFIPI (Casein kinase II subunit beta (Fragment) n=1 Tax=Pfiesteria piscicida TaxID=71001 RepID=E8Z6B9_PFIPI)

HSP 1 Score: 107 bits (268), Expect = 6.390e-28
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLRRHSS 171
            +EKY+ +DFGRCPRVLCGGQP LP GQ+D PR NTVKI+CPKC DI+YPRLRRHS+
Sbjct:   65 MEKYQNVDFGRCPRVLCGGQPALPVGQTDVPRTNTVKIFCPKCSDIFYPRLRRHSN 120
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BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A0A6N2AGE8_SOLCI (Casein kinase II subunit beta n=1 Tax=Solanum chilense TaxID=4083 RepID=A0A6N2AGE8_SOLCI)

HSP 1 Score: 98.2 bits (243), Expect = 3.420e-25
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLR 159
            LEKYK  DFGRCPRV C GQP LP GQSD PR +TVKIYCPKCEDIYYPR +
Sbjct:   21 LEKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRASTVKIYCPKCEDIYYPRSK 72
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BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A0A438BVY9_VITVI (Casein kinase II subunit beta n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BVY9_VITVI)

HSP 1 Score: 97.4 bits (241), Expect = 5.510e-25
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLRRHSS 171
            LEKYK  DFGRCPRV C GQP LP GQSD PR +TVKIYCPKCEDIYYPR +   S
Sbjct:   39 LEKYKSYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGS 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A0A453JBJ8_AEGTS (Casein kinase II subunit beta n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453JBJ8_AEGTS)

HSP 1 Score: 98.2 bits (243), Expect = 5.950e-25
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLRRHSST 174
            LEK+K  DFGRCPRV C GQP LP GQSD PR +TVKIYCPKCED+YYPR +  ++T
Sbjct:   39 LEKFKNCDFGRCPRVSCSGQPCLPMGQSDIPRSSTVKIYCPKCEDLYYPRSKHQANT 95
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BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A0A5B6YIY8_DAVIN (Casein kinase II subunit beta (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YIY8_DAVIN)

HSP 1 Score: 97.1 bits (240), Expect = 8.510e-25
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLR 159
            LEKYK  DFGRCPRV C GQP LP GQSD PR +TVKIYCPKCEDIYYPR +
Sbjct:   30 LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A0A2R6RCX4_ACTCC (Casein kinase II subunit beta n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RCX4_ACTCC)

HSP 1 Score: 97.1 bits (240), Expect = 1.520e-24
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLR 159
            LEKYK  DFGRCPRV C GQP LP GQSD PR +TVKIYCPKCEDIYYPR +
Sbjct:   36 LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A0A444D3D1_ENSVE (Casein kinase II subunit beta n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444D3D1_ENSVE)

HSP 1 Score: 96.3 bits (238), Expect = 1.710e-24
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLRRHSS 171
            LEK+K  DFGRCPRV C GQP LP GQSD PR +TVKIYCPKCEDIYYPR +   S
Sbjct:   54 LEKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGS 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A9P2P6_PICSI (Casein kinase II subunit beta n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P2P6_PICSI)

HSP 1 Score: 100 bits (249), Expect = 2.140e-24
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLR 159
            LEKYKR+DFGRCPRV CGGQP LP  QSD PR  TVKIYCPKCED+YYPR +
Sbjct:  185 LEKYKRVDFGRCPRVCCGGQPCLPASQSDIPRQGTVKIYCPKCEDLYYPRSK 236
[Close]
BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A0A834LLQ9_RHOSS (Casein kinase II subunit beta n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LLQ9_RHOSS)

HSP 1 Score: 97.1 bits (240), Expect = 2.160e-24
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLR 159
            LEKYK  DFGRCPRV C GQP LP GQSD PR +TVKIYCPKCEDIYYPR +
Sbjct:   49 LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Match: A0A0V0HPM7_SOLCH (Casein kinase II subunit beta n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HPM7_SOLCH)

HSP 1 Score: 99.0 bits (245), Expect = 2.190e-24
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    4 LEKYKRMDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLRRHSS 171
            LEKYK  DFGRCPRV C GQP LP GQSD PR +TVKIYCPKCEDIYYPR +   S
Sbjct:  132 LEKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGS 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121991.4521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E8Z6B9_PFIPI6.390e-2876.79Casein kinase II subunit beta (Fragment) n=1 Tax=P... [more]
A0A6N2AGE8_SOLCI3.420e-2578.85Casein kinase II subunit beta n=1 Tax=Solanum chil... [more]
A0A438BVY9_VITVI5.510e-2575.00Casein kinase II subunit beta n=1 Tax=Vitis vinife... [more]
A0A453JBJ8_AEGTS5.950e-2570.18Casein kinase II subunit beta n=1 Tax=Aegilops tau... [more]
A0A5B6YIY8_DAVIN8.510e-2578.85Casein kinase II subunit beta (Fragment) n=1 Tax=D... [more]
A0A2R6RCX4_ACTCC1.520e-2478.85Casein kinase II subunit beta n=1 Tax=Actinidia ch... [more]
A0A444D3D1_ENSVE1.710e-2473.21Casein kinase II subunit beta n=1 Tax=Ensete ventr... [more]
A9P2P6_PICSI2.140e-2478.85Casein kinase II subunit beta n=1 Tax=Picea sitche... [more]
A0A834LLQ9_RHOSS2.160e-2478.85Casein kinase II subunit beta n=1 Tax=Rhododendron... [more]
A0A0V0HPM7_SOLCH2.190e-2475.00Casein kinase II subunit beta n=1 Tax=Solanum chac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121991contigM-pyrifera_M_contig121991:46..219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.1
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog4565.Traes_4BL_FBCD190E5.2
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Plays a complex role in regulating the basal catalytic activity of the alpha subunit
EggNOG OGs37N3F@33090,3G8JE@35493,3IKU5@38820,3KX4P@4447,COG5041@1,KOG3092@2759
COG Functional cat.DKT
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size174
Cds size153
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.096675-UTR-M-pyrifera_M_contig121991:45..661622815739.096675-UTR-M-pyrifera_M_contig121991:45..66Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121991 46..66 +
1692277546.5162292-UTR-M-pyrifera_M_contig121991:45..661692277546.5162292-UTR-M-pyrifera_M_contig121991:45..66Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121991 46..66 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.1068585-CDS-M-pyrifera_M_contig121991:66..2191622815739.1068585-CDS-M-pyrifera_M_contig121991:66..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121991 67..219 +
1692277546.5299835-CDS-M-pyrifera_M_contig121991:66..2191692277546.5299835-CDS-M-pyrifera_M_contig121991:66..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121991 67..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121991.4521.1prot_M-pyrifera_M_contig121991.4521.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121991 67..219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121991.4521.1

>prot_M-pyrifera_M_contig121991.4521.1 ID=prot_M-pyrifera_M_contig121991.4521.1|Name=mRNA_M-pyrifera_M_contig121991.4521.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
MDFGRCPRVLCGGQPVLPCGQSDQPRMNTVKIYCPKCEDIYYPRLRRHSS
T
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mRNA from alignment at M-pyrifera_M_contig121991:46..219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121991.4521.1 ID=mRNA_M-pyrifera_M_contig121991.4521.1|Name=mRNA_M-pyrifera_M_contig121991.4521.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig121991:46..219+ (Macrocystis pyrifera P11B4 male)
CAGCTGGAGAAGTACAAGCGCATGGACTTTGGCCGGTGCCCGCGGGTGCT
GTGCGGCGGCCAGCCGGTGCTGCCGTGCGGCCAGAGCGACCAGCCCCGCA
TGAACACCGTCAAGATCTACTGCCCCAAGTGCGAGGACATCTACTACCCC
CGCCTCCGCCGCCACAGCAGTACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121991:46..219+

>mRNA_M-pyrifera_M_contig121991.4521.1 ID=mRNA_M-pyrifera_M_contig121991.4521.1|Name=mRNA_M-pyrifera_M_contig121991.4521.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig121991:46..219+ (Macrocystis pyrifera P11B4 male)
ATGGACTTTGGCCGGTGCCCGCGGGTGCTGTGCGGCGGCCAGCCGGTGCT
GCCGTGCGGCCAGAGCGACCAGCCCCGCATGAACACCGTCAAGATCTACT
GCCCCAAGTGCGAGGACATCTACTACCCCCGCCTCCGCCGCCACAGCAGT
ACGATGGACTTTGGCCGGTGCCCGCGGGTGCTGTGCGGCGGCCAGCCGGT
GCTGCCGTGCGGCCAGAGCGACCAGCCCCGCATGAACACCGTCAAGATCT
ACTGCCCCAAGTGCGAGGACATCTACTACCCCCGCCTCCGCCGCCACAGC
AGTACG
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