mRNA_M-pyrifera_M_contig121970.4515.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121970.4515.1
Unique NamemRNA_M-pyrifera_M_contig121970.4515.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: UPI0018E55459 (inositol 1,4,5-trisphosphate receptor n=1 Tax=Zerene cesonia TaxID=33412 RepID=UPI0018E55459)

HSP 1 Score: 72.8 bits (177), Expect = 4.800e-13
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   16 YCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWA 246
            Y    L LF+NMC +R Y+ + S+ + L +  +  C+ NG LP EVRA+F  L+  +H+DR+PQ PV+  +  R W+
Sbjct:  720 YYRHQLDLFSNMCLNRQYLALNSLSQQLHIDLILKCMSNGALPHEVRASFCRLMLHLHVDRDPQEPVTPVKYARLWS 796
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: UPI001E280DE2 (inositol 1,4,5-trisphosphate receptor n=1 Tax=Colias crocea TaxID=72248 RepID=UPI001E280DE2)

HSP 1 Score: 72.8 bits (177), Expect = 4.800e-13
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   16 YCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWA 246
            Y    L LF+NMC +R Y+ + S+ + L +  +  C+ NG LP EVRA+F  L+  +H+DR+PQ PV+  +  R W+
Sbjct:  720 YYRHQLDLFSNMCLNRQYLALNSLSQQLHIDLILKCMSNGALPHEVRASFCRLMLHLHVDRDPQEPVTPVKYARLWS 796
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: A0A8B8HL06_9NEOP (Inositol 1,4,5-trisphosphate receptor n=1 Tax=Vanessa tameamea TaxID=334116 RepID=A0A8B8HL06_9NEOP)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   16 YCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATLG 255
            Y    L LF+NMC +R Y+ + S+ + L +  +  C+ NG L  EVRA+F  L+  +H+DR+PQ PV+  +  R WA + 
Sbjct:  720 YYRHQLDLFSNMCLNRQYLALNSLSQQLQIDLILKCMSNGALSHEVRASFCRLMLHLHVDRDPQEPVTPVKYARLWAEVA 799
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: A0A8B8HK48_9NEOP (Inositol 1,4,5-trisphosphate receptor n=1 Tax=Vanessa tameamea TaxID=334116 RepID=A0A8B8HK48_9NEOP)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   16 YCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATLG 255
            Y    L LF+NMC +R Y+ + S+ + L +  +  C+ NG L  EVRA+F  L+  +H+DR+PQ PV+  +  R WA + 
Sbjct:  720 YYRHQLDLFSNMCLNRQYLALNSLSQQLQIDLILKCMSNGALSHEVRASFCRLMLHLHVDRDPQEPVTPVKYARLWAEVA 799
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: UPI001FCD9CEA (inositol 1,4,5-trisphosphate receptor isoform X3 n=1 Tax=Vanessa atalanta TaxID=42275 RepID=UPI001FCD9CEA)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   16 YCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATLG 255
            Y    L LF+NMC +R Y+ + S+ + L +  +  C+ NG L  EVRA+F  L+  +H+DR+PQ PV+  +  R WA + 
Sbjct:  720 YYRHQLDLFSNMCLNRQYLALNSLSQQLQIDLILKCMSNGALSHEVRASFCRLMLHLHVDRDPQEPVTPVKYARLWAEVA 799
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: A0A8B8HKA4_9NEOP (Inositol 1,4,5-trisphosphate receptor n=5 Tax=Vanessa tameamea TaxID=334116 RepID=A0A8B8HKA4_9NEOP)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   16 YCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATLG 255
            Y    L LF+NMC +R Y+ + S+ + L +  +  C+ NG L  EVRA+F  L+  +H+DR+PQ PV+  +  R WA + 
Sbjct:  720 YYRHQLDLFSNMCLNRQYLALNSLSQQLQIDLILKCMSNGALSHEVRASFCRLMLHLHVDRDPQEPVTPVKYARLWAEVA 799
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: UPI001FCD55C3 (inositol 1,4,5-trisphosphate receptor isoform X1 n=2 Tax=Vanessa atalanta TaxID=42275 RepID=UPI001FCD55C3)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   16 YCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATLG 255
            Y    L LF+NMC +R Y+ + S+ + L +  +  C+ NG L  EVRA+F  L+  +H+DR+PQ PV+  +  R WA + 
Sbjct:  720 YYRHQLDLFSNMCLNRQYLALNSLSQQLQIDLILKCMSNGALSHEVRASFCRLMLHLHVDRDPQEPVTPVKYARLWAEVA 799
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: A0A4X2LHA1_VOMUR (Inositol 1,4,5-trisphosphate receptor n=1 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2LHA1_VOMUR)

HSP 1 Score: 70.1 bits (170), Expect = 4.260e-12
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   13 AYCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATL 252
            +Y    L+LF  MC DR Y+ I  I + L +  +F C+ +  LP ++RA+F  L+  VH+DR+PQ PV+  +  R W  +
Sbjct:  727 SYYRYQLKLFARMCLDRQYLAIHEISQQLGVDLIFLCMADEMLPFDLRASFCHLMLHVHVDRDPQEPVTPVKFARLWTEI 806
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: A0A4X2LJB4_VOMUR (Inositol 1,4,5-trisphosphate receptor n=7 Tax=Metatheria TaxID=9263 RepID=A0A4X2LJB4_VOMUR)

HSP 1 Score: 70.1 bits (170), Expect = 4.260e-12
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   13 AYCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATL 252
            +Y    L+LF  MC DR Y+ I  I + L +  +F C+ +  LP ++RA+F  L+  VH+DR+PQ PV+  +  R W  +
Sbjct:  727 SYYRYQLKLFARMCLDRQYLAIHEISQQLGVDLIFLCMADEMLPFDLRASFCHLMLHVHVDRDPQEPVTPVKFARLWTEI 806
[Close]
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Match: UPI001E27F572 (inositol 1,4,5-trisphosphate receptor isoform X2 n=1 Tax=Pieris rapae TaxID=64459 RepID=UPI001E27F572)

HSP 1 Score: 70.1 bits (170), Expect = 4.260e-12
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   16 YCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSEVRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATLG 255
            Y    L LF+NMC +R Y+ + S+ + L +  +  C+ N  LP EVRA+F  L+  +H+DR+PQ PV+  +  R W  + 
Sbjct:  712 YYRHQLDLFSNMCLNRQYLALNSLSQQLHIDLILKCMSNESLPHEVRASFCRLMLHLHVDRDPQEPVTPVKYARLWTEVA 791
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121970.4515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018E554594.800e-1340.26inositol 1,4,5-trisphosphate receptor n=1 Tax=Zere... [more]
UPI001E280DE24.800e-1340.26inositol 1,4,5-trisphosphate receptor n=1 Tax=Coli... [more]
A0A8B8HL06_9NEOP1.220e-1238.75Inositol 1,4,5-trisphosphate receptor n=1 Tax=Vane... [more]
A0A8B8HK48_9NEOP1.220e-1238.75Inositol 1,4,5-trisphosphate receptor n=1 Tax=Vane... [more]
UPI001FCD9CEA1.220e-1238.75inositol 1,4,5-trisphosphate receptor isoform X3 n... [more]
A0A8B8HKA4_9NEOP1.220e-1238.75Inositol 1,4,5-trisphosphate receptor n=5 Tax=Vane... [more]
UPI001FCD55C31.220e-1238.75inositol 1,4,5-trisphosphate receptor isoform X1 n... [more]
A0A4X2LHA1_VOMUR4.260e-1237.50Inositol 1,4,5-trisphosphate receptor n=1 Tax=Vomb... [more]
A0A4X2LJB4_VOMUR4.260e-1237.50Inositol 1,4,5-trisphosphate receptor n=7 Tax=Meta... [more]
UPI001E27F5724.260e-1237.50inositol 1,4,5-trisphosphate receptor isoform X2 n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121970contigM-pyrifera_M_contig121970:149..409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score70.5
Seed ortholog evalue4.5e-10
Seed eggNOG ortholog9713.XP_006743752.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Inositol 1,4,5-trisphosphate receptor type 3
EggNOG OGs38BAI@33154,3BB2U@33208,3CTXJ@33213,3EGI8@33554,3JA6I@40674,485MF@7711,48VJG@7742,KOG3533@1,KOG3533@2759
COG Functional cat.T
Best tax levelCarnivora
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.858834-CDS-M-pyrifera_M_contig121970:148..4091622815738.858834-CDS-M-pyrifera_M_contig121970:148..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121970 149..409 -
1692277546.379099-CDS-M-pyrifera_M_contig121970:148..4091692277546.379099-CDS-M-pyrifera_M_contig121970:148..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121970 149..409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121970.4515.1prot_M-pyrifera_M_contig121970.4515.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121970 149..409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121970.4515.1

>prot_M-pyrifera_M_contig121970.4515.1 ID=prot_M-pyrifera_M_contig121970.4515.1|Name=mRNA_M-pyrifera_M_contig121970.4515.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
HPQTAYCAASLRLFTNMCRDRNYVCIRSIEEMLPLPAVFACVRNGQLPSE
VRAAFAELLRTVHLDRNPQVPVSVPQLTRRWATLGRV
back to top

mRNA from alignment at M-pyrifera_M_contig121970:149..409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121970.4515.1 ID=mRNA_M-pyrifera_M_contig121970.4515.1|Name=mRNA_M-pyrifera_M_contig121970.4515.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig121970:149..409- (Macrocystis pyrifera P11B4 male)
CACCCTCAGACGGCGTACTGCGCGGCGTCGCTGCGGCTGTTCACGAACAT
GTGCAGGGACAGGAACTACGTGTGCATCCGCAGCATTGAGGAAATGCTGC
CTCTGCCGGCAGTGTTCGCCTGTGTGCGCAACGGTCAGCTTCCATCCGAA
GTTCGTGCTGCGTTCGCTGAACTGCTGCGAACGGTGCACCTGGACAGGAA
TCCGCAAGTGCCAGTATCTGTCCCTCAACTCACACGACGGTGGGCTACTC
TGGGCCGCGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121970:149..409-

>mRNA_M-pyrifera_M_contig121970.4515.1 ID=mRNA_M-pyrifera_M_contig121970.4515.1|Name=mRNA_M-pyrifera_M_contig121970.4515.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig121970:149..409- (Macrocystis pyrifera P11B4 male)
CACCCTCAGACGGCGTACTGCGCGGCGTCGCTGCGGCTGTTCACGAACAT
GTGCAGGGACAGGAACTACGTGTGCATCCGCAGCATTGAGGAAATGCTGC
CTCTGCCGGCAGTGTTCGCCTGTGTGCGCAACGGTCAGCTTCCATCCGAA
GTTCGTGCTGCGTTCGCTGAACTGCTGCGAACGGTGCACCTGGACAGGAA
TCCGCAAGTGCCAGTATCTGTCCCTCAACTCACACGACGGTGGGCTACTC
TGGGCCGCGTCCACCCTCAGACGGCGTACTGCGCGGCGTCGCTGCGGCTG
TTCACGAACATGTGCAGGGACAGGAACTACGTGTGCATCCGCAGCATTGA
GGAAATGCTGCCTCTGCCGGCAGTGTTCGCCTGTGTGCGCAACGGTCAGC
TTCCATCCGAAGTTCGTGCTGCGTTCGCTGAACTGCTGCGAACGGTGCAC
CTGGACAGGAATCCGCAAGTGCCAGTATCTGTCCCTCAACTCACACGACG
GTGGGCTACTCTGGGCCGCGTC
back to top