mRNA_M-pyrifera_M_contig121960.4512.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121960.4512.1
Unique NamemRNA_M-pyrifera_M_contig121960.4512.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121960.4512.1 vs. uniprot
Match: A0A6A5BDR2_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BDR2_NAEFO)

HSP 1 Score: 115 bits (289), Expect = 1.090e-27
Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    4 VDANPEYLLIFSADHGVDAITSSGYVLHGETEGGNEGYLLMYNPLLEPYKSPKIDVVDVAPTLAKYL-GADIPFATVGMPRRQFHNADQEGIVGQSNVLKESITQLDRGARARGKD 348
            +DANP+YLLI S+DHG D + S+GYVLHG +  GNEGY+++YNP L+PY+  ++D+VDV PT+AKYL G DIP   +G+ R  F   D E +  +S VLKES+ QL      RG D
Sbjct:  307 IDANPDYLLILSSDHGTDDV-SNGYVLHGYSRDGNEGYVMLYNPRLKPYEE-RLDIVDVCPTVAKYLAGVDIPADNIGVSRAYF-GGDDESLRYRSYVLKESLVQLTDTTTRRGTD 419
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BLAST of mRNA_M-pyrifera_M_contig121960.4512.1 vs. uniprot
Match: D2V4G4_NAEGR (FBOX domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V4G4_NAEGR)

HSP 1 Score: 115 bits (289), Expect = 1.100e-27
Identity = 61/116 (52.59%), Postives = 82/116 (70.69%), Query Frame = 1 
Query:    4 VDANPEYLLIFSADHGVDAITSSGYVLHGETEGGNEGYLLMYNPLLEPYKSPKIDVVDVAPTLAKYL-GADIPFATVGMPRRQFHNADQEGIVGQSNVLKESITQLDRGARARGKD 348
            +DANP+YLLI S+DHG D + S+GYVLHG +  GNEGY+++YNP L+PY   ++D+VDV PT+AKYL G DIP   +G+ R  F + D+E +  +S VLKES+ QL      RG D
Sbjct:  299 IDANPDYLLILSSDHGTDDV-SNGYVLHGYSRDGNEGYVMLYNPRLKPYDE-RLDIVDVCPTVAKYLKGVDIPADNIGVSRAYFGD-DEESLKYKSYVLKESLVQLTDTTTRRGTD 411
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BLAST of mRNA_M-pyrifera_M_contig121960.4512.1 vs. uniprot
Match: F4PK90_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PK90_CAVFA)

HSP 1 Score: 63.9 bits (154), Expect = 1.810e-9
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:    4 VDANPEYLLIFSADHGVDAITSSGYVLHGETEGGNEGYLLMYNPLLEPYKSPK----IDVVDVAPTLAKYL---GADIPFATVG 234
            +D NPEYLL+  +DHG      S    HG+ +GGNE +LL+YNP L P    K    ID VDV  T+++Y    G  +P   +G
Sbjct:  481 IDDNPEYLLVIFSDHG--GKLKSETAAHGKNDGGNEAFLLIYNPTLTPLPQDKQDKFIDQVDVCSTISQYFFGSGVSLPAENIG 562
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BLAST of mRNA_M-pyrifera_M_contig121960.4512.1 vs. uniprot
Match: Q86I83_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q86I83_DICDI)

HSP 1 Score: 57.0 bits (136), Expect = 4.810e-7
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:    4 VDANPEYLLIFSADHGVDAITSSGYVLHGETEGGNEGYLLMYNPLLEPYKSPK----IDVVDVAPTLAKYL---GADIPFATVG 234
            VD NPEYLL+  +DHG     +S    HG   GGNE ++++YNP ++P  S      ID VDV  T+ ++    G  +P   +G
Sbjct:  267 VDENPEYLLVIFSDHG--GKLTSETAAHGANNGGNEAFMVIYNPTIDPLPSNLQDKFIDQVDVCSTIWQHFSGSGVSLPSENIG 348
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BLAST of mRNA_M-pyrifera_M_contig121960.4512.1 vs. uniprot
Match: D3BT23_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BT23_POLPP)

HSP 1 Score: 56.6 bits (135), Expect = 6.520e-7
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:    4 VDANPEYLLIFSADHGVDAITSSGYVLHGETEGGNEGYLLMYNPLLEPYKSPK----IDVVDVAPTLAKYL---GADIPFATVG 234
            +D NP+YLL+  +DHG     +S    HG+  GGNE ++++YNP + P    +    ID VDV  T++++    G  IP   +G
Sbjct:  365 IDNNPDYLLVIFSDHG--GKLTSETAAHGKNNGGNEAFMIIYNPRITPLPPNEQDKFIDQVDVCSTISQHFVGSGVSIPSVNIG 446
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121960.4512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6A5BDR2_NAEFO1.090e-2752.59Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
D2V4G4_NAEGR1.100e-2752.59FBOX domain-containing protein n=1 Tax=Naegleria g... [more]
F4PK90_CAVFA1.810e-941.67Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
Q86I83_DICDI4.810e-738.10Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
D3BT23_POLPP6.520e-735.71Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121960contigM-pyrifera_M_contig121960:2..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue2.5e-24
Seed eggNOG ortholog5762.XP_002681254.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EASP@1,2SGZI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size348
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121960.4512.1prot_M-pyrifera_M_contig121960.4512.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121960 2..461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.6911926-CDS-M-pyrifera_M_contig121960:1..801622815738.6911926-CDS-M-pyrifera_M_contig121960:1..80Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121960 2..80 +
1692277546.3090293-CDS-M-pyrifera_M_contig121960:1..801692277546.3090293-CDS-M-pyrifera_M_contig121960:1..80Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121960 2..80 +
1622815738.714065-CDS-M-pyrifera_M_contig121960:139..3191622815738.714065-CDS-M-pyrifera_M_contig121960:139..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121960 140..319 +
1692277546.321552-CDS-M-pyrifera_M_contig121960:139..3191692277546.321552-CDS-M-pyrifera_M_contig121960:139..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121960 140..319 +
1622815738.7275953-CDS-M-pyrifera_M_contig121960:372..4611622815738.7275953-CDS-M-pyrifera_M_contig121960:372..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121960 373..461 +
1692277546.3311582-CDS-M-pyrifera_M_contig121960:372..4611692277546.3311582-CDS-M-pyrifera_M_contig121960:372..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121960 373..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121960.4512.1

>prot_M-pyrifera_M_contig121960.4512.1 ID=prot_M-pyrifera_M_contig121960.4512.1|Name=mRNA_M-pyrifera_M_contig121960.4512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MVDANPEYLLIFSADHGVDAITSSGYVLHGETEGGNEGYLLMYNPLLEPY
KSPKIDVVDVAPTLAKYLGADIPFATVGMPRRQFHNADQEGIVGQSNVLK
ESITQLDRGARARGKD
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mRNA from alignment at M-pyrifera_M_contig121960:2..461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121960.4512.1 ID=mRNA_M-pyrifera_M_contig121960.4512.1|Name=mRNA_M-pyrifera_M_contig121960.4512.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=460bp|location=Sequence derived from alignment at M-pyrifera_M_contig121960:2..461+ (Macrocystis pyrifera P11B4 male)
ATGGTCGATGCCAACCCCGAGTATCTCTTGATCTTCTCAGCCGACCATGG
TGTTGATGCTATCACCAGCAGTGGTTACGGTACGAGCCCCATTGATTGAT
TCCCATGCATGCACCCCTTGTTACTGACAAGGTGCCAGTGCTGCATGGCG
AAACTGAAGGCGGGAACGAAGGGTACTTGCTCATGTACAACCCACTGCTC
GAGCCCTACAAATCGCCCAAGATCGATGTAGTTGACGTGGCGCCCACGCT
GGCCAAGTATCTCGGGGCTGACATTCCCTTCGCTACCGTGGGCATGCCAA
GGAGGCAGTTCCACAATGGTGATATTTTTTTCCCTTCCCCCGCGCGGCAC
CGGACTGTTCTGACCCGGAAGCAGACCAGGAAGGTATTGTGGGACAAAGC
AATGTCCTGAAGGAGAGCATTACTCAGCTCGACAGAGGAGCGAGGGCGAG
GGGCAAAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121960:2..461+

>mRNA_M-pyrifera_M_contig121960.4512.1 ID=mRNA_M-pyrifera_M_contig121960.4512.1|Name=mRNA_M-pyrifera_M_contig121960.4512.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig121960:2..461+ (Macrocystis pyrifera P11B4 male)
ATGGTCGATGCCAACCCCGAGTATCTCTTGATCTTCTCAGCCGACCATGG
TGTTGATGCTATCACCAGCAGTGGTTACGATGGTCGATGCCAACCCCGAG
TATCTCTTGATCTTCTCAGCCGACCATGGTGTTGATGCTATCACCAGCAG
TGGTTACGTGCTGCATGGCGAAACTGAAGGCGGGAACGAAGGGTACTTGC
TCATGTACAACCCACTGCTCGAGCCCTACAAATCGCCCAAGATCGATGTA
GTTGACGTGGCGCCCACGCTGGCCAAGTATCTCGGGGCTGACATTCCCTT
CGCTACCGTGGGCATGCCAAGGAGGCAGTTCCACAATGTGCTGCATGGCG
AAACTGAAGGCGGGAACGAAGGGTACTTGCTCATGTACAACCCACTGCTC
GAGCCCTACAAATCGCCCAAGATCGATGTAGTTGACGTGGCGCCCACGCT
GGCCAAGTATCTCGGGGCTGACATTCCCTTCGCTACCGTGGGCATGCCAA
GGAGGCAGTTCCACAATGCAGACCAGGAAGGTATTGTGGGACAAAGCAAT
GTCCTGAAGGAGAGCATTACTCAGCTCGACAGAGGAGCGAGGGCGAGGGG
CAAAGACCAGACCAGGAAGGTATTGTGGGACAAAGCAATGTCCTGAAGGA
GAGCATTACTCAGCTCGACAGAGGAGCGAGGGCGAGGGGCAAAGAC
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