mRNA_M-pyrifera_M_contig121950.4510.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121950.4510.1
Unique NamemRNA_M-pyrifera_M_contig121950.4510.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: A0A0K0LC55_9SCOR (Cellular protein AbCp-15 (Fragment) n=1 Tax=Androctonus bicolor TaxID=748906 RepID=A0A0K0LC55_9SCOR)

HSP 1 Score: 124 bits (311), Expect = 7.850e-35
Identity = 62/92 (67.39%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GTFTISNLGMFG+K+FAA+INPPQACILA G  E+R+V  PD  A   ++ A  MSVTLSCDHRVVDGAVGA+WL  FK  +E P  MLL
Sbjct:   33 QGGTFTISNLGMFGVKNFAAIINPPQACILAVGTTEKRLV--PDENADAGYRTASLMSVTLSCDHRVVDGAVGAQWLAHFKKILEKPEMMLL 122
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: A0A3S3RUX1_9ACAR (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RUX1_9ACAR)

HSP 1 Score: 131 bits (330), Expect = 9.640e-35
Identity = 65/92 (70.65%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GTFTISNLGMFGIK FAAVINPPQACILA G  E R+V    P+  E +KVA  M+VTLSCDHRVVDGAVGAKWLQ FK  +E P  M+L
Sbjct:  321 QGGTFTISNLGMFGIKSFAAVINPPQACILAIGSTERRIV----PDENEPYKVANVMTVTLSCDHRVVDGAVGAKWLQVFKKMVEQPFTMVL 408
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: UPI00189519CC (dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI00189519CC)

HSP 1 Score: 124 bits (310), Expect = 1.050e-34
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GT T+SNLGMFG+K+F+A+INPPQACILA G  E+ ++  PD E++  ++ AK MSVTLSCDHRVVDGAVGA+WLQ FK  +E P  MLL
Sbjct:   31 QGGTITVSNLGMFGVKNFSAIINPPQACILAVGSTEDTLI--PDDESSTGYRTAKVMSVTLSCDHRVVDGAVGAQWLQHFKHLLERPHLMLL 120
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: A0A7R8V9N6_TIMDO (Hypothetical protein n=1 Tax=Timema douglasi TaxID=61478 RepID=A0A7R8V9N6_TIMDO)

HSP 1 Score: 130 bits (328), Expect = 2.920e-34
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GTFTISNLGMFG+KHF+A+INPPQ+CILA GG E+R++ + D EA   FK A +++VTLSCDHRVVDGAVGA+WL  FK  +EDP +MLL
Sbjct:  348 QGGTFTISNLGMFGVKHFSAIINPPQSCILAIGGTEDRLIPDKDSEAG--FKQATYVTVTLSCDHRVVDGAVGAQWLGKFKQFIEDPNSMLL 437
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: A0A7R9J078_TIMCA (Acetyltransferase component of pyruvate dehydrogenase complex n=8 Tax=Timema TaxID=61471 RepID=A0A7R9J078_TIMCA)

HSP 1 Score: 130 bits (328), Expect = 3.350e-34
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GTFTISNLGMFG+KHF+A+INPPQ+CILA GG E+R++ + D EA   FK A +++VTLSCDHRVVDGAVGA+WL  FK  +EDP +MLL
Sbjct:  358 QGGTFTISNLGMFGVKHFSAIINPPQSCILAIGGTEDRLIPDKDSEAG--FKQATYVTVTLSCDHRVVDGAVGAQWLGKFKQFIEDPNSMLL 447
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: F2UD31_SALR5 (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UD31_SALR5)

HSP 1 Score: 130 bits (326), Expect = 4.660e-34
Identity = 64/92 (69.57%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GTFTISNLGMFGI  F A+INPPQ+CILA G   +RVVV  DP A   F  A +MSVTLSCDHRVVDGAVG+KWL AF+  MEDP+ MLL
Sbjct:  334 QGGTFTISNLGMFGIDRFTAIINPPQSCILAVGQTAQRVVV--DPTAESGFAAANYMSVTLSCDHRVVDGAVGSKWLAAFRRYMEDPVKMLL 423
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: A0A2P6N3Z2_9EUKA (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N3Z2_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 9.640e-34
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    7 TGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            +GTFT+SNLGMFGIK F AVINPPQACILA GG E+RV+ + D     +F  A F++VTLSCDHRVVDGAVGA+WLQAFK  +EDP  +LL
Sbjct:  459 SGTFTVSNLGMFGIKQFCAVINPPQACILAVGGTEQRVIADGD-----KFSSANFLTVTLSCDHRVVDGAVGARWLQAFKEYLEDPAKLLL 544
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: UPI0003F0CCAC (dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0CCAC)

HSP 1 Score: 128 bits (321), Expect = 1.220e-33
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GTFT+SNLGMFG+KHF A+INPPQACILA GGV++ +VV+ D E  + +  A  M+VTLSCDHRVVDGAVGA+WLQ FK  +E P  MLL
Sbjct:  289 QGGTFTVSNLGMFGVKHFTAIINPPQACILAVGGVKKTLVVDEDNE--QGYSAASVMNVTLSCDHRVVDGAVGAQWLQHFKKFLEKPYTMLL 378
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BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: UPI001E1DEF4B (dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEF4B)

HSP 1 Score: 125 bits (315), Expect = 1.340e-33
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GTFTISNLGMFGIK F+AVINPPQACILA GG E+R+VV+ D ++   +  A  MSVTLSCDHRVVDGAVGA+WL  F+  +E+P  MLL
Sbjct:  191 QGGTFTISNLGMFGIKSFSAVINPPQACILAVGGAEKRLVVDEDSDSG--YSEATVMSVTLSCDHRVVDGAVGAQWLAQFRKYLENPSTMLL 280
[Close]
BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Match: UPI0011305160 (dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 n=1 Tax=Salmo trutta TaxID=8032 RepID=UPI0011305160)

HSP 1 Score: 121 bits (304), Expect = 1.380e-33
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    4 QTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAEQFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL 279
            Q GTFTISNLGMFG+K+F+A+INPPQACILA GG E+R++     +  + F VA  MSVTLSCDHRVVDGA+GA+WL  F+  +E P+ MLL
Sbjct:   48 QGGTFTISNLGMFGVKNFSAIINPPQACILAVGGSEKRLL---PADNEKGFNVASMMSVTLSCDHRVVDGAIGAQWLAEFRKFLEKPVTMLL 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121950.4510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K0LC55_9SCOR7.850e-3567.39Cellular protein AbCp-15 (Fragment) n=1 Tax=Androc... [more]
A0A3S3RUX1_9ACAR9.640e-3570.65Acetyltransferase component of pyruvate dehydrogen... [more]
UPI00189519CC1.050e-3464.13dihydrolipoyllysine-residue acetyltransferase comp... [more]
A0A7R8V9N6_TIMDO2.920e-3467.39Hypothetical protein n=1 Tax=Timema douglasi TaxID... [more]
A0A7R9J078_TIMCA3.350e-3467.39Acetyltransferase component of pyruvate dehydrogen... [more]
F2UD31_SALR54.660e-3469.57Acetyltransferase component of pyruvate dehydrogen... [more]
A0A2P6N3Z2_9EUKA9.640e-3468.13Acetyltransferase component of pyruvate dehydrogen... [more]
UPI0003F0CCAC1.220e-3366.30dihydrolipoyllysine-residue acetyltransferase comp... [more]
UPI001E1DEF4B1.340e-3367.39dihydrolipoyllysine-residue acetyltransferase comp... [more]
UPI00113051601.380e-3363.04dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121950contigM-pyrifera_M_contig121950:149..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score129.8
Seed ortholog evalue6.7e-28
Seed eggNOG ortholog946362.XP_004992783.1
Preferred nameLAT1
KEGG rclassRC00004,RC02742,RC02857
KEGG koko:K00627
KEGG ReactionR00209,R02569
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004742,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007610,GO:0007625,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016407,GO:0016417,GO:0016418,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030523,GO:0031974,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098798,GO:0140096,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
EggNOG free text desc.dihydrolipoyllysine-residue acetyltransferase activity
EggNOG OGs38BJW@33154,COG0508@1,KOG0557@2759
EC2.3.1.12
COG Functional cat.C
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons1
Model size282
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.572767-CDS-M-pyrifera_M_contig121950:148..4301622815738.572767-CDS-M-pyrifera_M_contig121950:148..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121950 149..430 -
1692277546.2415798-CDS-M-pyrifera_M_contig121950:148..4301692277546.2415798-CDS-M-pyrifera_M_contig121950:148..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121950 149..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121950.4510.1prot_M-pyrifera_M_contig121950.4510.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121950 149..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121950.4510.1

>prot_M-pyrifera_M_contig121950.4510.1 ID=prot_M-pyrifera_M_contig121950.4510.1|Name=mRNA_M-pyrifera_M_contig121950.4510.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MQTGTFTISNLGMFGIKHFAAVINPPQACILAAGGVEERVVVNPDPEAAE
QFKVAKFMSVTLSCDHRVVDGAVGAKWLQAFKSRMEDPLNMLL*
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mRNA from alignment at M-pyrifera_M_contig121950:149..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121950.4510.1 ID=mRNA_M-pyrifera_M_contig121950.4510.1|Name=mRNA_M-pyrifera_M_contig121950.4510.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig121950:149..430- (Macrocystis pyrifera P11B4 male)
ATGCAGACGGGCACGTTCACGATCTCGAACCTGGGCATGTTCGGCATCAA
GCACTTTGCGGCGGTCATCAACCCCCCGCAGGCGTGCATCCTGGCGGCAG
GCGGCGTCGAGGAGCGCGTGGTGGTCAACCCCGACCCGGAGGCGGCCGAG
CAGTTCAAGGTGGCCAAGTTCATGTCCGTCACCCTCAGCTGCGACCACCG
CGTCGTGGACGGCGCCGTCGGCGCCAAGTGGCTGCAGGCCTTCAAGTCGC
GCATGGAGGACCCGCTCAACATGCTCCTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121950:149..430-

>mRNA_M-pyrifera_M_contig121950.4510.1 ID=mRNA_M-pyrifera_M_contig121950.4510.1|Name=mRNA_M-pyrifera_M_contig121950.4510.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig121950:149..430- (Macrocystis pyrifera P11B4 male)
ATGCAGACGGGCACGTTCACGATCTCGAACCTGGGCATGTTCGGCATCAA
GCACTTTGCGGCGGTCATCAACCCCCCGCAGGCGTGCATCCTGGCGGCAG
GCGGCGTCGAGGAGCGCGTGGTGGTCAACCCCGACCCGGAGGCGGCCGAG
CAGTTCAAGGTGGCCAAGTTCATGTCCGTCACCCTCAGCTGCGACCACCG
CGTCGTGGACGGCGCCGTCGGCGCCAAGTGGCTGCAGGCCTTCAAGTCGC
GCATGGAGGACCCGCTCAACATGCTCCTGTAGATGCAGACGGGCACGTTC
ACGATCTCGAACCTGGGCATGTTCGGCATCAAGCACTTTGCGGCGGTCAT
CAACCCCCCGCAGGCGTGCATCCTGGCGGCAGGCGGCGTCGAGGAGCGCG
TGGTGGTCAACCCCGACCCGGAGGCGGCCGAGCAGTTCAAGGTGGCCAAG
TTCATGTCCGTCACCCTCAGCTGCGACCACCGCGTCGTGGACGGCGCCGT
CGGCGCCAAGTGGCTGCAGGCCTTCAAGTCGCGCATGGAGGACCCGCTCA
ACATGCTCCTGTAG
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