mRNA_M-pyrifera_M_contig121939.4505.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A0A388K0P8_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K0P8_CHABU) HSP 1 Score: 57.0 bits (136), Expect = 1.800e-7 Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 19 GALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTNVSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
G L GTLS SDFRGLD ++ + M V +F++ + V P VSC + + V+ + L+ VHR WV DE +++ TD++ AI+
Sbjct: 151 GKLVGTLSASDFRGLDPKAIQEMHVMPVMEFVSRTCGSGVPLPL-VSCRPTTPLATVMAEALIAEVHRVWVTDEESRLLGVVTFTDMIRAIK 241
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: UPI000B8C8ED9 (SNF1-related protein kinase regulatory subunit gamma-like PV42a n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C8ED9) HSP 1 Score: 57.0 bits (136), Expect = 2.660e-7 Identity = 35/100 (35.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query: 1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVG--APTNVSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
+VN L GT S +D RG + + + F Q G A VSC ++GEV+ K + VHR WVVDE + L+SL+DI+ A+R
Sbjct: 263 LVNGKGRKLIGTFSATDLRGCHLATLETWLPQTALDFTEKVSTLQAGPRARELVSCSADESLGEVINKAVSKHVHRLWVVDENGFLQGLVSLSDIIKALR 362
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A0A565B2Q7_9BRAS (CBS domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B2Q7_9BRAS) HSP 1 Score: 57.0 bits (136), Expect = 2.670e-7 Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 31 GTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN-------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIRLS 300
GT S SD +G + +R+ ++ +F+ R + AP V+C S T+ +V+ + RVHR WVVD D + L+SLTDI+ A+R +
Sbjct: 271 GTFSASDLKGCHLATLRSWLPLNALEFVEKIPRTPLFAPDTSTPGRELVTCHVSFTLDQVIRMVTTKRVHRVWVVDHNDKLQGLVSLTDIIGAVRFA 367
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: R0I885_9BRAS (Uncharacterized protein n=5 Tax=Camelineae TaxID=980083 RepID=R0I885_9BRAS) HSP 1 Score: 56.6 bits (135), Expect = 3.540e-7 Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 31 GTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQ----VGAPTN--VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
GT S SD +G + +R+ ++ +F+ R+ V P V+C + T+G+V+ + + RVHR WVVD+ D + L+SLTDI+ A+R
Sbjct: 241 GTFSASDLKGCHLATLRSWLPLNALEFVEKIPRSPLFTVVDTPGRELVTCHVTSTLGKVLRMVTMKRVHRVWVVDQNDGLQGLVSLTDIIAAVR 334
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A9URX9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9URX9_MONBE) HSP 1 Score: 56.2 bits (134), Expect = 4.570e-7 Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 19 GALEGTLSCSDFRG-LDSSNVRAVCDMSVAQFLA----DKRRAQVGAPTNVSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAI 291
GA+ G LS D RG L V A SV +++A D+ R+++ P ++C T+GEV+ KL + R+HR +VVD P ++L+D+L A+
Sbjct: 213 GAIIGNLSVRDIRGALTGKRVFAALHKSVTEYIACNAPDRERSEM-LPA-ITCSSQTTLGEVISKLAVSRIHRVYVVDASGLPIRTITLSDVLAAL 306
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: D7U140_VITVI (CBS domain-containing protein n=3 Tax=Vitis TaxID=3603 RepID=D7U140_VITVI) HSP 1 Score: 56.2 bits (134), Expect = 4.930e-7 Identity = 33/108 (30.56%), Postives = 52/108 (48.15%), Query Frame = 1
Query: 1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN--------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIRLS 300
++N L GT S +D RG + +++ +SV F + + TN V+C +GE + K + VHR WVVD L+SLTD++ A+R+S
Sbjct: 246 LINGKGRKLIGTFSATDLRGCPVTQLQSWLPLSVMDFTEKVSTSPLHGSTNSRSPWRELVTCFAESCLGEAIDKAVAKHVHRVWVVDRQGSLVGLVSLTDMIRAVRIS 353
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A0A5J5BGX7_9ASTE (CBS domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BGX7_9ASTE) HSP 1 Score: 56.2 bits (134), Expect = 4.990e-7 Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN--------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
++N A+ GTLS +D RG S +++ V +F+ + + A ++ V C ++ EV+ K + VHR WVVD+ L+SLTD++ AIR
Sbjct: 264 LLNVKGRAIVGTLSATDLRGCPISQLQSWLQTDVLEFIGKLWASPLHATSDFGRSSRELVVCCAKSSLAEVIDKAITKHVHRVWVVDQLGLLVGLISLTDMIRAIR 369
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A0A438HIV6_VITVI (Topless-related protein 4 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HIV6_VITVI) HSP 1 Score: 56.2 bits (134), Expect = 5.630e-7 Identity = 33/108 (30.56%), Postives = 52/108 (48.15%), Query Frame = 1
Query: 1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN--------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIRLS 300
++N L GT S +D RG + +++ +SV F + + TN V+C +GE + K + VHR WVVD L+SLTD++ A+R+S
Sbjct: 1859 LINGKGRKLIGTFSATDLRGCPVTQLQSWLPLSVMDFTEKVSTSPLHGSTNSRSPWRELVTCFAESCLGEAIDKAVAKHVHRVWVVDRQGSLVGLVSLTDMIRAVRIS 1966
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: UPI00053C98CA (SNF1-related protein kinase regulatory subunit gamma-like PV42b n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C98CA) HSP 1 Score: 55.1 bits (131), Expect = 1.280e-6 Identity = 32/105 (30.48%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN-------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
+VN + ++GT S SD +G + ++ + +F + A T V+C + T+ +V+ K+ RVHR WVVDE + L+SLTD++ A+R
Sbjct: 277 LVNGKNRKVKGTFSASDLKGCHLATLQTWLPLMAVEFAEKIPMTPLFAGTRGASPRELVTCQATSTLAQVIQKVTTKRVHRVWVVDEDGRLQGLVSLTDVIGAVR 381
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: V4KBE8_EUTSA (CBS domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KBE8_EUTSA) HSP 1 Score: 54.7 bits (130), Expect = 1.720e-6 Identity = 33/105 (31.43%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN-------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
+V+ + + GT S SD +G + +R+ ++ +F R + A V+C + T+ +V+ + RVHR WVVD D + LLSLTDI+ A+R
Sbjct: 244 LVDGKNRRVVGTFSSSDLKGCHLATLRSWLPLNALEFAEKIPRTPLFAAATSTPGRELVTCHVTSTLAQVISMVTAKRVHRFWVVDHNDGLQGLLSLTDIIAAVR 348 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig121939.4505.1 >prot_M-pyrifera_M_contig121939.4505.1 ID=prot_M-pyrifera_M_contig121939.4505.1|Name=mRNA_M-pyrifera_M_contig121939.4505.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTback to top mRNA from alignment at M-pyrifera_M_contig121939:222..527- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig121939.4505.1 ID=mRNA_M-pyrifera_M_contig121939.4505.1|Name=mRNA_M-pyrifera_M_contig121939.4505.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig121939:222..527- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig121939:222..527- >mRNA_M-pyrifera_M_contig121939.4505.1 ID=mRNA_M-pyrifera_M_contig121939.4505.1|Name=mRNA_M-pyrifera_M_contig121939.4505.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig121939:222..527- (Macrocystis pyrifera P11B4 male)back to top |