mRNA_M-pyrifera_M_contig121853.4499.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121853.4499.1
Unique NamemRNA_M-pyrifera_M_contig121853.4499.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121853.4499.1 vs. uniprot
Match: A0A2E7KBM7_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KBM7_9PLAN)

HSP 1 Score: 114 bits (286), Expect = 2.190e-32
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 MTYNSKDKLNAFHLTGSVGVSTLLGLLTGSWMVFLVMSILLVGSSLLTGEIRLPDHRTKR 180
            MTYNSKDKLNAFHLTGSVGVSTLLGLLTGSW+VFLVMSILLVGSSLLTGEIR+PDHRTKR
Sbjct:    1 MTYNSKDKLNAFHLTGSVGVSTLLGLLTGSWVVFLVMSILLVGSSLLTGEIRIPDHRTKR 60
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BLAST of mRNA_M-pyrifera_M_contig121853.4499.1 vs. uniprot
Match: A0A517WWH7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WWH7_9PLAN)

HSP 1 Score: 103 bits (257), Expect = 5.860e-28
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 MTYNSKDKLNAFHLTGSVGVSTLLGLLTGSWMVFLVMSILLVGSSLLTGEIRLPDHRTKR 180
            MTYNSKDKLN FHLTGS+GVS LL LLTGSW+VFLVMS LLVGSSLLTGEIR+PDHR KR
Sbjct:    1 MTYNSKDKLNTFHLTGSLGVSVLLALLTGSWVVFLVMSFLLVGSSLLTGEIRIPDHRYKR 60
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BLAST of mRNA_M-pyrifera_M_contig121853.4499.1 vs. uniprot
Match: A0A518AXW3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518AXW3_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 1.750e-6
Identity = 24/54 (44.44%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   10 NSKDKLNAFHLTGSVGVSTLLGLLTGSWMVFLVMSILLVGSSLLTGEIRLPDHR 171
            N+++KLNA  + G V ++ +  LLT SW+VFL+++I+L G+S L+G+IR+   R
Sbjct:    3 NARNKLNAATIQGIVLIAGVFALLTRSWIVFLLLAIVLAGTSFLSGDIRIRSRR 56
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121853.4499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KBM7_9PLAN2.190e-3296.67Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517WWH7_9PLAN5.860e-2886.67Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A518AXW3_9BACT1.750e-644.44Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121853contigM-pyrifera_M_contig121853:154..336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size183
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.0944374-CDS-M-pyrifera_M_contig121853:153..3361622815738.0944374-CDS-M-pyrifera_M_contig121853:153..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121853 154..336 +
1692277546.0416596-CDS-M-pyrifera_M_contig121853:153..3361692277546.0416596-CDS-M-pyrifera_M_contig121853:153..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121853 154..336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121853.4499.1prot_M-pyrifera_M_contig121853.4499.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121853 154..336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121853.4499.1

>prot_M-pyrifera_M_contig121853.4499.1 ID=prot_M-pyrifera_M_contig121853.4499.1|Name=mRNA_M-pyrifera_M_contig121853.4499.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MTYNSKDKLNAFHLTGSVGVSTLLGLLTGSWMVFLVMSILLVGSSLLTGE
IRLPDHRTKR*
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mRNA from alignment at M-pyrifera_M_contig121853:154..336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121853.4499.1 ID=mRNA_M-pyrifera_M_contig121853.4499.1|Name=mRNA_M-pyrifera_M_contig121853.4499.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig121853:154..336+ (Macrocystis pyrifera P11B4 male)
ATGACCTACAACAGTAAAGACAAATTGAACGCGTTCCACTTAACAGGCAG
CGTGGGTGTTTCCACACTTTTAGGTCTGCTGACCGGGAGCTGGATGGTGT
TCCTCGTAATGAGTATTTTGCTGGTCGGTTCATCGCTGCTGACCGGTGAG
ATCCGGTTACCGGACCACCGTACCAAGCGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121853:154..336+

>mRNA_M-pyrifera_M_contig121853.4499.1 ID=mRNA_M-pyrifera_M_contig121853.4499.1|Name=mRNA_M-pyrifera_M_contig121853.4499.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig121853:154..336+ (Macrocystis pyrifera P11B4 male)
ATGACCTACAACAGTAAAGACAAATTGAACGCGTTCCACTTAACAGGCAG
CGTGGGTGTTTCCACACTTTTAGGTCTGCTGACCGGGAGCTGGATGGTGT
TCCTCGTAATGAGTATTTTGCTGGTCGGTTCATCGCTGCTGACCGGTGAG
ATCCGGTTACCGGACCACCGTACCAAGCGTTAAATGACCTACAACAGTAA
AGACAAATTGAACGCGTTCCACTTAACAGGCAGCGTGGGTGTTTCCACAC
TTTTAGGTCTGCTGACCGGGAGCTGGATGGTGTTCCTCGTAATGAGTATT
TTGCTGGTCGGTTCATCGCTGCTGACCGGTGAGATCCGGTTACCGGACCA
CCGTACCAAGCGTTAA
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