mRNA_M-pyrifera_M_contig121845.4494.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121845.4494.1
Unique NamemRNA_M-pyrifera_M_contig121845.4494.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: A0A518G8K7_9BACT (SGNH_hydro domain-containing protein n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518G8K7_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 3.280e-11
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 IAAEIMTKHGIATNDLYSLVANRTDYFSQDGTHFNEAGKAAQATQVADEIQRAL 162
            IAAEIM +H I ++DL+ LV N  D+ S DG HFN  GK AQA+QVA+ IQ+ L
Sbjct:  166 IAAEIMKQHSIPSDDLFGLVENHPDWQSNDGVHFNAQGKEAQASQVAETIQKHL 219          
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: A0A5C1A4S7_9BACT (Alpha/beta hydrolase n=2 Tax=Limnoglobus roseus TaxID=2598579 RepID=A0A5C1A4S7_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 2.060e-9
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 IAAEIMTKHGIATNDLYSLVANRTDYFSQDGTHFNEAGKAAQATQVADEIQRAL 162
            +AA +M K  I T+DL+++VA + ++FS+DG HFN  G AA   QVAD I+R L
Sbjct:  423 LAASVMAKEKIGTDDLFAVVAEKPEFFSRDGVHFNAKGNAALGAQVADAIRRLL 476          
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: A0A517VFF8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VFF8_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 7.180e-8
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 IAAEIMTKHGIATNDLYSLVANRTDYFSQDGTHFNEAGKAAQATQVADEIQRAL 162
            +AAEIMTK  + T+DL+ LV +  D+ S DG HFN  G  A A QVA+ + + L
Sbjct:  166 LAAEIMTKRQVPTDDLFELVKDHADWQSTDGVHFNAKGNEALAKQVAESVSQQL 219          
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: A0A5C5XER9_9PLAN (GDSL-like Lipase/Acylhydrolase n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A5C5XER9_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 2.680e-7
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 IAAEIMTKHGIATNDLYSLVANRTDYFSQDGTHFNEAGKAAQATQVADEIQRAL 162
            +AAEIM ++G++TN+L+ LV +  D+ S DG HFN  G  A A QV   + + L
Sbjct:  166 LAAEIMKRNGVSTNNLFELVEDHADWQSTDGVHFNAKGNEALAKQVTQSVSQQL 219          
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: UPI001B31B317 (SGNH/GDSL hydrolase family protein n=1 Tax=Gemmata palustris TaxID=2822762 RepID=UPI001B31B317)

HSP 1 Score: 53.1 bits (126), Expect = 7.460e-7
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    4 AAEIMTKHGIATNDLYSLVANRTDYFSQDGTHFNEAGKAAQATQVADEIQRAL 162
            AAE++ K  I TNDL++LV ++ D+FS DG H +  G AA    VA E+ + L
Sbjct:  171 AAEVVAKEKIPTNDLFALVIDKPDWFSNDGVHLDAKGSAAMGEHVAAEVLKLL 223          
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: A0A225CYY9_9BACT (Uncharacterized protein n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=A0A225CYY9_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 2.720e-6
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 IAAEIMTKHGIATNDLYSLVANRTDYFSQDGTHFNEAGKAAQATQVADEIQRAL 162
            IAA ++ K GI T+DL++LV ++ D++S+DG H N  G  A   QV  ++ + L
Sbjct:  170 IAAAVVEKDGIPTDDLFTLVVDKPDWYSRDGVHLNAKGTTALGEQVTGQVLKVL 223          
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: A0A6P1MC83_9BACT (Sulfatase-like hydrolase/transferase n=1 Tax=Tichowtungia aerotolerans TaxID=2697043 RepID=A0A6P1MC83_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 5.200e-6
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    4 AAEIMTKHGIATNDLYSLVAN-RTDYFSQDG-THFNEAGKAAQATQVADEIQRAL 162
            AAEIM KHG+ T+DLYSL A+   DYF   G  H+ +AG    A+QVA  IQR++
Sbjct:  635 AAEIMRKHGVETDDLYSLSASFPADYFMAPGDVHYADAGIRKLASQVAGSIQRSV 689          
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: A0A1Z8UEY8_9BACT (SGNH_hydro domain-containing protein n=1 Tax=Verrucomicrobia bacterium TMED56 TaxID=1986792 RepID=A0A1Z8UEY8_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 4.280e-5
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
Query:    4 AAEIMTKHGIATNDLYSLVANRTDYFS--QDGTHFNEAGKAAQATQVADEIQRAL 162
            A E+M KHG+A NDLYSL+      +   ++  H+N+AG+   ATQVA  I   L
Sbjct:  213 ALEVMKKHGVAINDLYSLIGQERAKYQRGENDVHYNDAGRDLLATQVAKVITEEL 267          
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Match: A0A7X1B0H8_9BACT (SGNH/GDSL hydrolase family protein n=1 Tax=Puniceicoccus vermicola TaxID=388746 RepID=A0A7X1B0H8_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 9.040e-5
Identity = 21/54 (38.89%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 IAAEIMTKHGIATNDLYSLVANRTDYFSQDGTHFNEAGKAAQATQVADEIQRAL 162
            I  ++  + G+  +DLYSL+A+R+D +S+D THF E G+  QA+ V   +   L
Sbjct:  153 ILRDLAQEEGLPVSDLYSLMADRSDLYSEDATHFGEEGQKLQASCVIKTLNPLL 206          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121845.4494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A518G8K7_9BACT3.280e-1157.41SGNH_hydro domain-containing protein n=1 Tax=Aurel... [more]
A0A5C1A4S7_9BACT2.060e-950.00Alpha/beta hydrolase n=2 Tax=Limnoglobus roseus Ta... [more]
A0A517VFF8_9PLAN7.180e-848.15Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A5C5XER9_9PLAN2.680e-744.44GDSL-like Lipase/Acylhydrolase n=3 Tax=Planctomyce... [more]
UPI001B31B3177.460e-745.28SGNH/GDSL hydrolase family protein n=1 Tax=Gemmata... [more]
A0A225CYY9_9BACT2.720e-640.74Uncharacterized protein n=1 Tax=Fimbriiglobus rube... [more]
A0A6P1MC83_9BACT5.200e-652.73Sulfatase-like hydrolase/transferase n=1 Tax=Ticho... [more]
A0A1Z8UEY8_9BACT4.280e-543.64SGNH_hydro domain-containing protein n=1 Tax=Verru... [more]
A0A7X1B0H8_9BACT9.040e-538.89SGNH/GDSL hydrolase family protein n=1 Tax=Punicei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121845contigM-pyrifera_M_contig121845:1..168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size153
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.885887-UTR-M-pyrifera_M_contig121845:0..151622815737.885887-UTR-M-pyrifera_M_contig121845:0..15Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121845 1..15 +
1692277545.9576-UTR-M-pyrifera_M_contig121845:0..151692277545.9576-UTR-M-pyrifera_M_contig121845:0..15Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121845 1..15 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.8981225-CDS-M-pyrifera_M_contig121845:15..1681622815737.8981225-CDS-M-pyrifera_M_contig121845:15..168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121845 16..168 +
1692277545.967727-CDS-M-pyrifera_M_contig121845:15..1681692277545.967727-CDS-M-pyrifera_M_contig121845:15..168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121845 16..168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121845.4494.1prot_M-pyrifera_M_contig121845.4494.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121845 16..168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121845.4494.1

>prot_M-pyrifera_M_contig121845.4494.1 ID=prot_M-pyrifera_M_contig121845.4494.1|Name=mRNA_M-pyrifera_M_contig121845.4494.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
MTKHGIATNDLYSLVANRTDYFSQDGTHFNEAGKAAQATQVADEIQRALN
*
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mRNA from alignment at M-pyrifera_M_contig121845:1..168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121845.4494.1 ID=mRNA_M-pyrifera_M_contig121845.4494.1|Name=mRNA_M-pyrifera_M_contig121845.4494.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig121845:1..168+ (Macrocystis pyrifera P11B4 male)
ATCGCTGCAGAAATCATGACGAAGCATGGGATAGCCACCAATGACCTTTA CAGTCTGGTCGCTAATCGCACCGATTACTTCTCCCAGGATGGCACCCATT TCAACGAGGCCGGGAAGGCGGCACAAGCCACCCAGGTGGCCGATGAGATT CAAAGGGCGTTGAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121845:1..168+

>mRNA_M-pyrifera_M_contig121845.4494.1 ID=mRNA_M-pyrifera_M_contig121845.4494.1|Name=mRNA_M-pyrifera_M_contig121845.4494.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig121845:1..168+ (Macrocystis pyrifera P11B4 male)
ATGACGAAGCATGGGATAGCCACCAATGACCTTTACAGTCTGGTCGCTAA
TCGCACCGATTACTTCTCCCAGGATGGCACCCATTTCAACGAGGCCGGGA
AGGCGGCACAAGCCACCCAGGTGGCCGATGAGATTCAAAGGGCGTTGAAC
TGAATGACGAAGCATGGGATAGCCACCAATGACCTTTACAGTCTGGTCGC
TAATCGCACCGATTACTTCTCCCAGGATGGCACCCATTTCAACGAGGCCG
GGAAGGCGGCACAAGCCACCCAGGTGGCCGATGAGATTCAAAGGGCGTTG
AACTGA
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