mRNA_M-pyrifera_M_contig121837.4492.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig121837.4492.1
Unique Name	mRNA_M-pyrifera_M_contig121837.4492.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A2A5EPS4_9HYPH (Glutathione S-transferase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EPS4_9HYPH)

HSP 1 Score: 211 bits (538), Expect = 6.560e-68
Identity = 98/115 (85.22%), Postives = 105/115 (91.30%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            DYG YLNWLHRSDATLTFPQTIVLRYTQLEPEERR+KQA DDYTQWFFSRLK+VER T+DREYLC GRFTIADICVGYALYLA TLG+  GFKPNT+RYYA L +RPAFKRA+ L
Sbjct:   87 DYGIYLNWLHRSDATLTFPQTIVLRYTQLEPEERRIKQAADDYTQWFFSRLKSVERVTSDREYLCAGRFTIADICVGYALYLADTLGMRDGFKPNTERYYAGLIERPAFKRAIEL 201

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A2Z4UPV5_9HYPH (Glutathione S-transferase GST-6.0 n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UPV5_9HYPH)

HSP 1 Score: 209 bits (532), Expect = 5.360e-67
Identity = 98/115 (85.22%), Postives = 103/115 (89.57%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            DYG YLNWLHRSDATLTFPQTIVLRYTQLEPEERR+KQA DDY QWFFSRLK+VE ATADREYLC GRFTIADICVGYALYLA TLG   GFK NT+ YYARLT+RPAFKRA+ L
Sbjct:   87 DYGAYLNWLHRSDATLTFPQTIVLRYTQLEPEERRIKQAADDYAQWFFSRLKSVELATADREYLCAGRFTIADICVGYALYLADTLGFRDGFKANTEEYYARLTERPAFKRAIEL 201

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A6N6VRP2_9HYPH (Glutathione S-transferase family protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VRP2_9HYPH)

HSP 1 Score: 206 bits (524), Expect = 9.430e-66
Identity = 96/115 (83.48%), Postives = 105/115 (91.30%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            DYG YLNWLHRSDATLTFPQTIVLRYT LEPEERRLKQAVDDYTQWFFSRLK+VE+AT +REYLC GRFTIADI VGYALYLA TLG  GGFKPNT+ YY RL++RPAF+RA++L
Sbjct:   89 DYGLYLNWLHRSDATLTFPQTIVLRYTVLEPEERRLKQAVDDYTQWFFSRLKSVEQATGEREYLCAGRFTIADIAVGYALYLADTLGFRGGFKPNTEAYYKRLSERPAFQRAISL 203

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A2A4RTL8_9HYPH (Glutathione S-transferase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4RTL8_9HYPH)

HSP 1 Score: 193 bits (491), Expect = 9.820e-61
Identity = 89/115 (77.39%), Postives = 99/115 (86.09%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            +YG YLNW+HRSDAT TFPQTI LRYT+LEPEERR+KQA DDYTQWFFSRLK VERAT D EYLC GRFT+ADICVGYAL LA +LGL  GFKPNT+ Y  RL +RPAFKRA++L
Sbjct:   89 EYGAYLNWIHRSDATFTFPQTIXLRYTKLEPEERRIKQAADDYTQWFFSRLKAVERATQDNEYLCAGRFTVADICVGYALALADSLGLRQGFKPNTEAYLKRLEERPAFKRAMSL 203

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A081BCH4_9HYPH (Possible glutathione S-transferase n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BCH4_9HYPH)

HSP 1 Score: 190 bits (482), Expect = 2.290e-59
Identity = 86/115 (74.78%), Postives = 97/115 (84.35%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            DYG YLNW+HRSDATLTFPQTIVLRYTQLEPEERRLKQA DDYTQWFF+RL++VE+    ++YLC  RFT+ADICVGYALYLA TLG   GFKPNT  YY RL  RPAF++A+ L
Sbjct:   89 DYGNYLNWIHRSDATLTFPQTIVLRYTQLEPEERRLKQAADDYTQWFFARLRSVEKGLEGKDYLCANRFTVADICVGYALYLADTLGFKDGFKPNTLAYYERLQARPAFQKAITL 203

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A2D4VGD8_9HYPH (Glutathione S-transferase n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VGD8_9HYPH)

HSP 1 Score: 188 bits (477), Expect = 1.240e-58
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            +YG +LNW+HRSDATLTFPQTIVLRYTQLEPEERRLKQA +DYTQWFF+RL+TVE A   R+YLC  RFT+ADICVG++LYLA TLG  GGFKPNT  YY RL+ RPAF+R++ L
Sbjct:   87 EYGAWLNWIHRSDATLTFPQTIVLRYTQLEPEERRLKQAAEDYTQWFFARLRTVEAALDGRDYLCADRFTVADICVGFSLYLADTLGFKGGFKPNTAAYYERLSARPAFQRSIEL 201

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A2E6PF46_9GAMM (Glutathione S-transferase n=9 Tax=root TaxID=1 RepID=A0A2E6PF46_9GAMM)

HSP 1 Score: 182 bits (463), Expect = 1.770e-56
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            DYG YLNWLHRSDATLTFPQT+VLRYT+LEPEERR+ Q  +DY +WF SRL+ VE   +DR+YLC GRFTIAD+C+GYAL LA +LGL+  FKPNT+RYY+ L +RPAFKRA  L
Sbjct:   89 DYGIYLNWLHRSDATLTFPQTLVLRYTRLEPEERRIPQVAEDYQRWFLSRLRCVEETLSDRKYLCAGRFTIADVCIGYALVLAESLGLSASFKPNTERYYSMLKERPAFKRAAGL 203

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A351NT34_9GAMM (Glutathione S-transferase n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A351NT34_9GAMM)

HSP 1 Score: 173 bits (438), Expect = 1.330e-52
Identity = 81/115 (70.43%), Postives = 93/115 (80.87%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            DYG YLNWLHRSDATLTFPQT+VLRYT LEPE  RL +  DDYT+WFFSRL++VE AT   ++L   RFTIADI VGYALYLA +LGLA  FKPNT  YYARL +RPAFK+A ++
Sbjct:   95 DYGEYLNWLHRSDATLTFPQTLVLRYTHLEPEATRLPKVADDYTKWFFSRLRSVELATEKHQFLVADRFTIADIAVGYALYLAESLGLAEDFKPNTSAYYARLKERPAFKKATSM 209

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A2D4QP29_9GAMM (Glutathione S-transferase n=3 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2D4QP29_9GAMM)

HSP 1 Score: 172 bits (437), Expect = 1.570e-52
Identity = 82/115 (71.30%), Postives = 91/115 (79.13%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAVAL 345
            +YG YLNW+HRSDATLTFPQTIVLRYTQLEPEERRL QAV DY QWF+SRL++VERA    EYLC GRFT+ADI VG+ALYLA  LGL  GFK NT   Y RL  RPAF +A  +
Sbjct:   89 EYGLYLNWIHRSDATLTFPQTIVLRYTQLEPEERRLPQAVKDYVQWFYSRLRSVERAVEXXEYLCAGRFTLADIXVGFALYLAEHLGLREGFKENTNLXYERLKSRPAFXKATXI 203

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BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Match: A0A0R2U463_9GAMM (Glutathione S-transferase n=1 Tax=SAR92 bacterium BACL26 MAG-121220-bin70 TaxID=1655626 RepID=A0A0R2U463_9GAMM)

HSP 1 Score: 172 bits (435), Expect = 4.830e-52
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 1

Query:    1 DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSRLKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYYARLTDRPAFKRAV 339
            DYG YLNWLHRSDATLTFPQT+VLRYT LEPE  RL +  +DY +WF+SRL+++E ATADRE+LC  RFTIADI VG+ALYLA +L L GGFKPNT  YY RL  RP F+RA+
Sbjct:   95 DYGIYLNWLHRSDATLTFPQTLVLRYTLLEPEATRLPKVAEDYRKWFYSRLRSLEMATADREFLCADRFTIADIAVGFALYLAESLNLEGGFKPNTLAYYQRLKARPGFQRAI 207

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig121837.4492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2A5EPS4_9HYPH	6.560e-68	85.22	Glutathione S-transferase n=1 Tax=Rhodobiaceae bac...	[more]
A0A2Z4UPV5_9HYPH	5.360e-67	85.22	Glutathione S-transferase GST-6.0 n=4 Tax=Hyphomic...	[more]
A0A6N6VRP2_9HYPH	9.430e-66	83.48	Glutathione S-transferase family protein n=1 Tax=P...	[more]
A0A2A4RTL8_9HYPH	9.820e-61	77.39	Glutathione S-transferase n=1 Tax=Rhodobiaceae bac...	[more]
A0A081BCH4_9HYPH	2.290e-59	74.78	Possible glutathione S-transferase n=1 Tax=Tepidic...	[more]
A0A2D4VGD8_9HYPH	1.240e-58	73.91	Glutathione S-transferase n=2 Tax=Parvibaculum Tax...	[more]
A0A2E6PF46_9GAMM	1.770e-56	70.43	Glutathione S-transferase n=9 Tax=root TaxID=1 Rep...	[more]
A0A351NT34_9GAMM	1.330e-52	70.43	Glutathione S-transferase n=1 Tax=Porticoccaceae b...	[more]
A0A2D4QP29_9GAMM	1.570e-52	71.30	Glutathione S-transferase n=3 Tax=Porticoccaceae b...	[more]
A0A0R2U463_9GAMM	4.830e-52	69.91	Glutathione S-transferase n=1 Tax=SAR92 bacterium ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig121837	contig	M-pyrifera_M_contig121837:5..352 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	208.4
Seed ortholog evalue	1.8e-51
Seed eggNOG ortholog	1282876.BAOK01000001_gene3488
Preferred name	MA20_22970
KEGG rclass	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG ko	ko:K00799
KEGG TC	1.A.12.2.2,1.A.12.3.2
KEGG Reaction	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathway	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Glutathione S-transferase, N-terminal domain
EggNOG OGs	1PA0Q@1224,2TVIC@28211,4BSWD@82117,COG0625@1,COG0625@2
EC	2.5.1.18
COG Functional cat.	O
Best tax level	unclassified Alphaproteobacteria
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko02000
Exons	1
Model size	348
Cds size	348
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815737.8091254-CDS-M-pyrifera_M_contig121837:4..352	1622815737.8091254-CDS-M-pyrifera_M_contig121837:4..352	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig121837 5..352 +
1692277545.9328835-CDS-M-pyrifera_M_contig121837:4..352	1692277545.9328835-CDS-M-pyrifera_M_contig121837:4..352	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig121837 5..352 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig121837.4492.1	prot_M-pyrifera_M_contig121837.4492.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig121837 5..352 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig121837:5..352+
coding sequence from alignment at M-pyrifera_M_contig121837:5..352+

protein sequence of mRNA_M-pyrifera_M_contig121837.4492.1

>prot_M-pyrifera_M_contig121837.4492.1 ID=prot_M-pyrifera_M_contig121837.4492.1|Name=mRNA_M-pyrifera_M_contig121837.4492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
DYGTYLNWLHRSDATLTFPQTIVLRYTQLEPEERRLKQAVDDYTQWFFSR
LKTVERATADREYLCGGRFTIADICVGYALYLATTLGLAGGFKPNTQRYY
ARLTDRPAFKRAVAL*

mRNA from alignment at M-pyrifera_M_contig121837:5..352+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig121837.4492.1 ID=mRNA_M-pyrifera_M_contig121837.4492.1|Name=mRNA_M-pyrifera_M_contig121837.4492.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig121837:5..352+ (Macrocystis pyrifera P11B4 male)
GACTACGGTACGTATCTGAACTGGCTGCACCGAAGCGACGCCACCCTGAC
GTTTCCGCAAACGATCGTGTTGCGCTATACGCAGCTGGAACCGGAAGAGC
GGCGTCTCAAGCAAGCGGTCGACGACTACACGCAGTGGTTCTTTTCCCGC
CTGAAGACCGTTGAACGTGCTACCGCCGATCGCGAGTACCTGTGTGGCGG
CCGCTTTACAATCGCCGACATCTGCGTCGGTTACGCGCTTTATCTCGCCA
CGACGCTTGGCCTGGCAGGCGGATTCAAACCGAATACGCAGCGGTATTAC
GCGCGACTGACGGACCGCCCGGCGTTCAAACGGGCGGTCGCGCTGTAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121837:5..352+

>mRNA_M-pyrifera_M_contig121837.4492.1 ID=mRNA_M-pyrifera_M_contig121837.4492.1|Name=mRNA_M-pyrifera_M_contig121837.4492.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig121837:5..352+ (Macrocystis pyrifera P11B4 male)
GACTACGGTACGTATCTGAACTGGCTGCACCGAAGCGACGCCACCCTGAC
GTTTCCGCAAACGATCGTGTTGCGCTATACGCAGCTGGAACCGGAAGAGC
GGCGTCTCAAGCAAGCGGTCGACGACTACACGCAGTGGTTCTTTTCCCGC
CTGAAGACCGTTGAACGTGCTACCGCCGATCGCGAGTACCTGTGTGGCGG
CCGCTTTACAATCGCCGACATCTGCGTCGGTTACGCGCTTTATCTCGCCA
CGACGCTTGGCCTGGCAGGCGGATTCAAACCGAATACGCAGCGGTATTAC
GCGCGACTGACGGACCGCCCGGCGTTCAAACGGGCGGTCGCGCTGTAGGA
CTACGGTACGTATCTGAACTGGCTGCACCGAAGCGACGCCACCCTGACGT
TTCCGCAAACGATCGTGTTGCGCTATACGCAGCTGGAACCGGAAGAGCGG
CGTCTCAAGCAAGCGGTCGACGACTACACGCAGTGGTTCTTTTCCCGCCT
GAAGACCGTTGAACGTGCTACCGCCGATCGCGAGTACCTGTGTGGCGGCC
GCTTTACAATCGCCGACATCTGCGTCGGTTACGCGCTTTATCTCGCCACG
ACGCTTGGCCTGGCAGGCGGATTCAAACCGAATACGCAGCGGTATTACGC
GCGACTGACGGACCGCCCGGCGTTCAAACGGGCGGTCGCGCTGTAG