mRNA_M-pyrifera_M_contig121787.4480.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121787.4480.1
Unique NamemRNA_M-pyrifera_M_contig121787.4480.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121787.4480.1 vs. uniprot
Match: UPI001CFDB31E (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFDB31E)

HSP 1 Score: 53.9 bits (128), Expect = 5.050e-6
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:   28 LALQNATLSSNVAAKN-GGAIVINNSE-LTMTNCVFAGNTASDGGAMFIKRTYDQKSATNIDTCKFSTNFATNNGGALRFQQFQSATITN--SYFEVNYAGVGGAVY 336
            ++L+  T S+N   +  GGAI I  ++  T+  C+F GNTA  GGAM++   Y       +++  F  N AT NGGAL F+   S   +N  S+++ N A  GGA+Y
Sbjct:  383 ISLRVCTFSNNNMEQGFGGAIHIAGAQRCTLEQCMFDGNTALHGGAMYLDSNY-----VFMESAAFLNNIATRNGGALYFKNRNSYQFSNLGSFYKNNTAFQGGALY 484
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BLAST of mRNA_M-pyrifera_M_contig121787.4480.1 vs. uniprot
Match: J9HVW2_9SPIT (Uncharacterized protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HVW2_9SPIT)

HSP 1 Score: 52.4 bits (124), Expect = 1.490e-5
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:   16 YNATLALQNATLSSNVAAKNGGAIVINNSELTMTNCVFAGNTASDGGAMFIKRTYDQKSATNIDTCKFSTNFATNNGGALRFQQFQSATI-TNSYFEVNYAGVGGAV 333
            Y+ +L ++N+T+    +   GGAI+I NS L + +  F  N+A  GG++ ++   +QK   +I    F  N AT  GG + +  ++      NS+ E NYA  G  +
Sbjct:   23 YDGSLEMKNSTMIGLKSHSQGGAILIENSNLNLIDSTFKYNSAYIGGSISLRSFNNQKQLYSILNNSFYGNTATQQGGCINYDTYKPIIYQNNSFLENNYAPYGNEI 129
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BLAST of mRNA_M-pyrifera_M_contig121787.4480.1 vs. uniprot
Match: A0A1Y3MUM0_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MUM0_PIRSE)

HSP 1 Score: 52.0 bits (123), Expect = 1.690e-5
Identity = 41/120 (34.17%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:    1 YYNNRYNATLALQNATLSSNVAAKNGGAIVIN---NSELTMTNCVFAGNTASDGGAMFIK-RTYDQKSATNIDTCK-----FSTNFATNNGGAL--RFQQFQSATITNSYFEVNYAGVGG 327
            + NN  N +++  N+   SN    NGGAI  +   N  L +T  VF+GN A +GGA++ K  TYD+ +     T       F  N A N GGA+   + +  S  I  + F +NYA + G
Sbjct:   25 HLNNDINVSIS--NSKFKSNTVKSNGGAICFDKIINLNLNLTENVFSGNIAHNGGALYFKGNTYDENTLYEDKTISIIHNVFDGNDADNFGGAIYSEYDKLYSKEIKGNIFRLNYADIMG 142
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BLAST of mRNA_M-pyrifera_M_contig121787.4480.1 vs. uniprot
Match: UPI001867EECE (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Luteolibacter sp. NBU1238 TaxID=2776705 RepID=UPI001867EECE)

HSP 1 Score: 50.4 bits (119), Expect = 8.170e-5
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   76 GGAIVINNSEL---TMTNCVFAGNTASDGGAMFIKRTYDQKSATNIDTCKFSTNFATNNGGALRFQQFQSATITNSYFEVNYAGV-GGAVY 336
            GG I+++       T++NC   GNTA  GG +F+          +I++C F  N +T  GGA  F  + + T TN  F  NYAG  GGA+Y
Sbjct:  498 GGGIIVDTDFARIPTLSNCRIIGNTAVQGGGIFVH----SNGGCDIESCDFRANSSTGRGGAGYFW-WSNVTTTNCNFSGNYAGDDGGAIY 583
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BLAST of mRNA_M-pyrifera_M_contig121787.4480.1 vs. uniprot
Match: A0A6I6ACK4_9PLAN (Probable pectate lyase C n=2 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6ACK4_9PLAN)

HSP 1 Score: 50.4 bits (119), Expect = 8.550e-5
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:   25 TLALQNATLSSNVAAKNGGAIVINNSELTMTNCVFAGNTASDGGAMFIKRTYDQKSATNIDTCKFSTNFA-TNNGGALRFQQF-------QSATITNSYFEVNYAGV-GGAV 333
            T+ +   TL++  +  NGGAI +++  L + +CVF GNTA  GGA+     YD  S+ ++    FS N A T++GGA+   +        +   I NS F  NY+   GGAV
Sbjct:  146 TVEITGLTLTNGYSTDNGGAI-LSSENLIVEDCVFTGNTADKGGAI-----YDDASSLSVRGSLFSGNIAATSDGGAIYHSETFPYPSDEERMLIENSQFTTNYSKFSGGAV 251
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121787.4480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001CFDB31E5.050e-637.38uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
J9HVW2_9SPIT1.490e-530.84Uncharacterized protein n=2 Tax=Oxytricha trifalla... [more]
A0A1Y3MUM0_PIRSE1.690e-534.17Uncharacterized protein (Fragment) n=1 Tax=Piromyc... [more]
UPI001867EECE8.170e-537.36right-handed parallel beta-helix repeat-containing... [more]
A0A6I6ACK4_9PLAN8.550e-535.71Probable pectate lyase C n=2 Tax=Gimesia benthica ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121787contigM-pyrifera_M_contig121787:180..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.2465744-CDS-M-pyrifera_M_contig121787:179..5151622815737.2465744-CDS-M-pyrifera_M_contig121787:179..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121787 180..515 +
1692277545.6547103-CDS-M-pyrifera_M_contig121787:179..5151692277545.6547103-CDS-M-pyrifera_M_contig121787:179..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121787 180..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121787.4480.1prot_M-pyrifera_M_contig121787.4480.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121787 180..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121787.4480.1

>prot_M-pyrifera_M_contig121787.4480.1 ID=prot_M-pyrifera_M_contig121787.4480.1|Name=mRNA_M-pyrifera_M_contig121787.4480.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
YYNNRYNATLALQNATLSSNVAAKNGGAIVINNSELTMTNCVFAGNTASD
GGAMFIKRTYDQKSATNIDTCKFSTNFATNNGGALRFQQFQSATITNSYF
EVNYAGVGGAVY
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mRNA from alignment at M-pyrifera_M_contig121787:180..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121787.4480.1 ID=mRNA_M-pyrifera_M_contig121787.4480.1|Name=mRNA_M-pyrifera_M_contig121787.4480.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig121787:180..515+ (Macrocystis pyrifera P11B4 male)
TACTACAACAACAGATACAATGCGACGCTCGCGTTGCAGAACGCCACGTT
GAGCAGCAATGTCGCTGCCAAGAACGGCGGAGCAATTGTCATCAACAACT
CCGAGCTGACGATGACCAACTGTGTATTCGCGGGCAACACTGCGTCTGAC
GGCGGTGCAATGTTCATCAAGAGGACGTACGACCAGAAGAGCGCCACCAA
TATCGACACCTGCAAGTTCAGCACCAACTTTGCGACGAACAACGGCGGAG
CCCTCCGCTTCCAACAGTTCCAGTCTGCCACCATCACCAACTCTTACTTT
GAGGTGAACTATGCCGGTGTCGGAGGTGCCGTCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121787:180..515+

>mRNA_M-pyrifera_M_contig121787.4480.1 ID=mRNA_M-pyrifera_M_contig121787.4480.1|Name=mRNA_M-pyrifera_M_contig121787.4480.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig121787:180..515+ (Macrocystis pyrifera P11B4 male)
TACTACAACAACAGATACAATGCGACGCTCGCGTTGCAGAACGCCACGTT
GAGCAGCAATGTCGCTGCCAAGAACGGCGGAGCAATTGTCATCAACAACT
CCGAGCTGACGATGACCAACTGTGTATTCGCGGGCAACACTGCGTCTGAC
GGCGGTGCAATGTTCATCAAGAGGACGTACGACCAGAAGAGCGCCACCAA
TATCGACACCTGCAAGTTCAGCACCAACTTTGCGACGAACAACGGCGGAG
CCCTCCGCTTCCAACAGTTCCAGTCTGCCACCATCACCAACTCTTACTTT
GAGGTGAACTATGCCGGTGTCGGAGGTGCCGTCTACTACTACAACAACAG
ATACAATGCGACGCTCGCGTTGCAGAACGCCACGTTGAGCAGCAATGTCG
CTGCCAAGAACGGCGGAGCAATTGTCATCAACAACTCCGAGCTGACGATG
ACCAACTGTGTATTCGCGGGCAACACTGCGTCTGACGGCGGTGCAATGTT
CATCAAGAGGACGTACGACCAGAAGAGCGCCACCAATATCGACACCTGCA
AGTTCAGCACCAACTTTGCGACGAACAACGGCGGAGCCCTCCGCTTCCAA
CAGTTCCAGTCTGCCACCATCACCAACTCTTACTTTGAGGTGAACTATGC
CGGTGTCGGAGGTGCCGTCTAC
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