mRNA_M-pyrifera_M_contig121781.4479.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121781.4479.1
Unique NamemRNA_M-pyrifera_M_contig121781.4479.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: K8Z744_NANGC (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z744_NANGC)

HSP 1 Score: 90.1 bits (222), Expect = 1.030e-20
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   16 LPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCSTDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAIAKL 273
            +P GWV +ESRSR G  YY++   G S WEKP   A            +  V  LHLL+KH+GSRRP SWRQE+ITC+K EA+  L
Sbjct:    4 IPAGWVQRESRSRGGQIYYYNTTTGESVWEKPTAPASA---------ESGQVHVLHLLKKHKGSRRPSSWRQENITCTKEEAMQSL 80          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: UPI0014556039 (peptidyl-prolyl cis-trans isomerase Pin1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014556039)

HSP 1 Score: 87.0 bits (214), Expect = 1.290e-19
Identity = 49/100 (49.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    1 MADQGLPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCSTDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAIAKLHGTCTQPVS 300
            MAD  LP+GW    S+S+ G  YY +     S WEKP    G          ST  VQC HLL KHEGSRRP SW+QE+IT +K EAI  L G   Q VS
Sbjct:    1 MADHDLPEGWEVHNSKSQGGRKYYLNTFTKKSQWEKPDMNDG----------STKVVQCSHLLVKHEGSRRPSSWKQENITRTKEEAIELLKGFREQIVS 90          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: Q9N492_CAEEL (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Caenorhabditis elegans TaxID=6239 RepID=Q9N492_CAEEL)

HSP 1 Score: 85.1 bits (209), Expect = 8.450e-19
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 MADQGLPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCSTDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAI 264
            M+D  LP GW  ++SRS     YYF+   G S WE+P   A   GS  +      SVQCLHLL KH+GSR P SWR +HIT SK +AI
Sbjct:    1 MSDNSLPAGWEKRQSRSNDRV-YYFNTATGRSQWERPDESAFGKGSELK------SVQCLHLLVKHDGSRNPSSWRSDHITRSKDDAI 81          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: A9V341_MONBE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V341_MONBE)

HSP 1 Score: 84.7 bits (208), Expect = 2.750e-18
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    7 DQGLPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCSTDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAI 264
            D  LP GW+ KES+S+PG +YYF+     S WE+P   A + GS  ++      V+  H+L KH  SRRP SWRQ  IT +KAEAI
Sbjct:   15 DTQLPAGWIQKESKSKPGKYYYFNTATQESVWERPTAAASSKGSTAQSS-GPSKVRASHILAKHRDSRRPSSWRQNTITRTKAEAI 99          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: D0NG85_PHYIT (Peptidyl-prolyl cis-trans isomerase n=7 Tax=Phytophthora TaxID=4783 RepID=D0NG85_PHYIT)

HSP 1 Score: 82.0 bits (201), Expect = 8.920e-18
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   16 LPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCST-----------DSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAIAKLHG 279
            LP+GW   +S+SRPG  Y+ H + G  +W+     A     R+R    T           +SVQ LH+L KH GSRRP SWRQE+IT SKA A AK  G
Sbjct:    8 LPRGWKEVQSKSRPGKVYFLHLKSGEKTWKLSHVHAKEREFRHRAAADTKKRRSADGSGPESVQALHILVKHSGSRRPSSWRQENITRSKAVAEAKAGG 106          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: K3WE84_GLOUD (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WE84_GLOUD)

HSP 1 Score: 82.8 bits (203), Expect = 1.460e-17
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    4 ADQGLPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLC----------------STDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAIAKLHG 279
            + Q LP+GW   +S+SRPG  YY H + G  +W+     A     R++                   S +SVQ LH+L KH GSRRP SWRQE IT +KA AIAK+ G
Sbjct:    6 SSQELPKGWKQVDSKSRPGKAYYLHVKTGEKTWKLSHVHAKEREFRHKAAKAKAGARQDKGGSSSSKSNESVQALHILVKHSGSRRPSSWRQESITRNKAVAIAKMEG 113          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: UPI0014030C9D (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014030C9D)

HSP 1 Score: 81.6 bits (200), Expect = 1.770e-17
Identity = 46/93 (49.46%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 MADQ--GLPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCSTDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAIAKL 273
            MAD+   LPQGW  + SRS  G  YYF+     S WE+P  E G+ G           V+C HLL KH GSRRP SWR+EHIT SK EA++ L
Sbjct:    1 MADEEESLPQGWEKRTSRSS-GRVYYFNHVTNSSQWERP--EGGSRGDE------PSQVRCSHLLVKHSGSRRPSSWREEHITRSKDEAVSIL 84          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: E3M0U9_CAERE (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Caenorhabditis TaxID=6237 RepID=E3M0U9_CAERE)

HSP 1 Score: 81.6 bits (200), Expect = 1.940e-17
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    4 ADQGLPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCSTDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAI 264
            ++  LP GW  ++SR+     YYF+   G+S W++P   A   GS  +      SVQCLHLL KHEGSR P SWR +HIT SK +AI
Sbjct:    3 SENPLPAGWEKRQSRTNDRV-YYFNTATGVSQWDRPEASAFGKGSDLK------SVQCLHLLVKHEGSRNPSSWRSDHITRSKEDAI 82          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: A0A329T1C6_9STRA (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A329T1C6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.620e-17
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   16 LPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCST------------DSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAIAKLHG 279
            LP+GW   +S+SRPG  Y+ H + G  +W+     A     R+R    T            DSVQ LH+L KH GSRRP SWRQE IT SKA A AK  G
Sbjct:    8 LPRGWKEVQSKSRPGKVYFLHVKSGEKTWKLSHVHAKEREFRHRAASDTKKRHSADGSSGPDSVQALHILVKHSGSRRPSSWRQETITRSKAVAEAKAGG 107          
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Match: A0A2H2JM65_CAEJA (WW domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2JM65_CAEJA)

HSP 1 Score: 79.0 bits (193), Expect = 3.120e-17
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 MADQGLPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRTLCSTDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAI 264
            M+D  LP GW  ++SR+     YYF+   G S WE+P   A + GS  +      SVQCLHLL KH  SR P SWR +HIT SK +AI
Sbjct:    1 MSDNPLPTGWEKRQSRTNDRA-YYFNTVTGRSQWERPDDSAFSKGSDLK------SVQCLHLLVKHAESRNPSSWRSDHITRSKEDAI 81          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121781.4479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8Z744_NANGC1.030e-2050.00Peptidyl-prolyl cis-trans isomerase n=2 Tax=Monodo... [more]
UPI00145560391.290e-1949.00peptidyl-prolyl cis-trans isomerase Pin1-like n=1 ... [more]
Q9N492_CAEEL8.450e-1950.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Caenor... [more]
A9V341_MONBE2.750e-1847.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monosi... [more]
D0NG85_PHYIT8.920e-1844.44Peptidyl-prolyl cis-trans isomerase n=7 Tax=Phytop... [more]
K3WE84_GLOUD1.460e-1741.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Globis... [more]
UPI0014030C9D1.770e-1749.46peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
E3M0U9_CAERE1.940e-1747.13Peptidyl-prolyl cis-trans isomerase n=3 Tax=Caenor... [more]
A0A329T1C6_9STRA2.620e-1745.00Peptidyl-prolyl cis-trans isomerase n=4 Tax=Phytop... [more]
A0A2H2JM65_CAEJA3.120e-1747.73WW domain-containing protein n=1 Tax=Caenorhabditi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121781contigM-pyrifera_M_contig121781:70..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score85.9
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog135651.CBN14627
KEGG koko:K09578
KEGG Pathwayko04622,map04622
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PPIC-type PPIASE domain
EggNOG OGs1KVYE@119089,3A05V@33154,3BGXQ@33208,3CUS1@33213,40D44@6231,40WM7@6236,COG0760@1,KOG3259@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03110
Exons3
Model size303
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121781.4479.1prot_M-pyrifera_M_contig121781.4479.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121781 70..471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.1847312-CDS-M-pyrifera_M_contig121781:69..2441622815737.1847312-CDS-M-pyrifera_M_contig121781:69..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121781 70..244 -
1692277545.622752-CDS-M-pyrifera_M_contig121781:69..2441692277545.622752-CDS-M-pyrifera_M_contig121781:69..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121781 70..244 -
1622815737.1967797-CDS-M-pyrifera_M_contig121781:280..3191622815737.1967797-CDS-M-pyrifera_M_contig121781:280..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121781 281..319 -
1692277545.6350312-CDS-M-pyrifera_M_contig121781:280..3191692277545.6350312-CDS-M-pyrifera_M_contig121781:280..319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121781 281..319 -
1622815737.2109797-CDS-M-pyrifera_M_contig121781:382..4711622815737.2109797-CDS-M-pyrifera_M_contig121781:382..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121781 383..471 -
1692277545.6447086-CDS-M-pyrifera_M_contig121781:382..4711692277545.6447086-CDS-M-pyrifera_M_contig121781:382..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121781 383..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121781.4479.1

>prot_M-pyrifera_M_contig121781.4479.1 ID=prot_M-pyrifera_M_contig121781.4479.1|Name=mRNA_M-pyrifera_M_contig121781.4479.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MADQGLPQGWVTKESRSRPGFFYYFHEEKGISSWEKPAPEAGTYGSRYRT
LCSTDSVQCLHLLRKHEGSRRPKSWRQEHITCSKAEAIAKLHGTCTQPVS
*
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mRNA from alignment at M-pyrifera_M_contig121781:70..471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121781.4479.1 ID=mRNA_M-pyrifera_M_contig121781.4479.1|Name=mRNA_M-pyrifera_M_contig121781.4479.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig121781:70..471- (Macrocystis pyrifera P11B4 male)
ATGGCAGATCAAGGACTTCCGCAAGGATGGGTGACGAAGGAGAGCCGGAG CAGGCCTGGATTCTTCTACTACTTCCACGAGGAGAAGGGGTAGGTGGGGC GTGTGCTGCTGGGACCCAGGGGGGTGGGCTGACACCGTGTTGGATGTCGC AGCATCAGCTCGTGGGAGAAACCGGCGCCGGAGGCCGGTACGTGCTCTCC AGCGTGGTGTTTGCGTACCCGTCGAAGATATGGCTCACGTTATCGTACGT TATGCTCCACAGACAGTGTGCAGTGTCTGCACCTGCTGCGCAAGCACGAG GGTTCTCGCCGCCCCAAGTCGTGGAGGCAAGAGCACATCACTTGCAGCAA GGCCGAGGCGATTGCCAAGCTTCACGGCACGTGCACACAACCCGTCTCGT AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121781:70..471-

>mRNA_M-pyrifera_M_contig121781.4479.1 ID=mRNA_M-pyrifera_M_contig121781.4479.1|Name=mRNA_M-pyrifera_M_contig121781.4479.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig121781:70..471- (Macrocystis pyrifera P11B4 male)
ATGGCAGATCAAGGACTTCCGCAAGGATGGGTGACGAAGGAGAGCCGGAG
CAGGCCTGGATTCTTCTACTACTTCCACGAGGAGAAGGGATGGCAGATCA
AGGACTTCCGCAAGGATGGGTGACGAAGGAGAGCCGGAGCAGGCCTGGAT
TCTTCTACTACTTCCACGAGGAGAAGGGCATCAGCTCGTGGGAGAAACCG
GCGCCGGAGGCCGGTACCATCAGCTCGTGGGAGAAACCGGCGCCGGAGGC
CGGTACATATGGCTCACGTTATCGTACGTTATGCTCCACAGACAGTGTGC
AGTGTCTGCACCTGCTGCGCAAGCACGAGGGTTCTCGCCGCCCCAAGTCG
TGGAGGCAAGAGCACATCACTTGCAGCAAGGCCGAGGCGATTGCCAAGCT
TCACGGCACGTGCACACAACCCGTCTCGTAGATATGGCTCACGTTATCGT
ACGTTATGCTCCACAGACAGTGTGCAGTGTCTGCACCTGCTGCGCAAGCA
CGAGGGTTCTCGCCGCCCCAAGTCGTGGAGGCAAGAGCACATCACTTGCA
GCAAGGCCGAGGCGATTGCCAAGCTTCACGGCACGTGCACACAACCCGTC
TCGTAG
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