mRNA_M-pyrifera_M_contig121776.4476.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121776.4476.1
Unique NamemRNA_M-pyrifera_M_contig121776.4476.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121776.4476.1 vs. uniprot
Match: A0A2E4X1Y6_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E4X1Y6_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 4.550e-7
Identity = 34/96 (35.42%), Postives = 45/96 (46.88%), Query Frame = 1 
Query:   19 QGLCWTWASPCAGSCSDLGYVNGFAPGDPALLPGSMS-GWRIPTCGEK-AAGPTSPQLQATGCSSCIFDPSHDHCDFDDPVICGSVPNNSHETWLV 300
             GL W WASPC+G CS+               PG    GWR    G++    P         C++  FDPSH+HCD++DP++       S E WLV
Sbjct:  673 NGLYWAWASPCSGGCSNA-------------TPGHYGRGWRWVRNGQEWGLRPNRGAFGNNRCAAPQFDPSHNHCDWNDPIVY-QHDGGSSELWLV 754
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BLAST of mRNA_M-pyrifera_M_contig121776.4476.1 vs. uniprot
Match: A0A2E7BTJ2_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E7BTJ2_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 4.040e-6
Identity = 35/97 (36.08%), Postives = 46/97 (47.42%), Query Frame = 1 
Query:   19 QGLCWTWASPCAGSCSDLGYVNGFAPGDPALLPGSMSGWRIPTCGEKAAGPTSPQLQATGCSSCI---FDPSHDHCDFDDPVICGSVPNNSHETWLV 300
             GL W WASPC+G CS+            A       GWR     ++ A    P+ +A G S C    FDP+H+HCD+ DP++       S E WLV
Sbjct:  737 NGLYWAWASPCSGGCSN------------ATPERYGHGWRWVRDDQEWA--LRPEREAFGRSRCAAPQFDPTHNHCDWGDPIVYRHN-GGSSELWLV 818
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BLAST of mRNA_M-pyrifera_M_contig121776.4476.1 vs. uniprot
Match: A0A2D9HFG9_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2D9HFG9_9DELT)

HSP 1 Score: 51.2 bits (121), Expect = 3.310e-5
Identity = 32/96 (33.33%), Postives = 43/96 (44.79%), Query Frame = 1 
Query:   19 QGLCWTWASPCAGSCSDLGYVNGFAPGDPALLPGSMS-GWR-IPTCGEKAAGPTSPQLQATGCSSCIFDPSHDHCDFDDPVICGSVPNNSHETWLV 300
             GL W WASPC+G CS+               PG    GWR +    E    P         C++  FDP+H+HC ++DP++       S E WLV
Sbjct:  311 NGLYWAWASPCSGGCSNA-------------TPGHYGRGWRWVRNDQEWGLRPNRGAFGNNRCAAPQFDPTHNHCVWNDPIVY-QHDGGSSELWLV 392
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121776.4476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E4X1Y6_9DELT4.550e-735.42Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A2E7BTJ2_9DELT4.040e-636.08Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A2D9HFG9_9DELT3.310e-533.33Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121776contigM-pyrifera_M_contig121776:197..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.0691395-CDS-M-pyrifera_M_contig121776:196..5141622815737.0691395-CDS-M-pyrifera_M_contig121776:196..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121776 197..514 -
1692277545.5719135-CDS-M-pyrifera_M_contig121776:196..5141692277545.5719135-CDS-M-pyrifera_M_contig121776:196..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121776 197..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121776.4476.1prot_M-pyrifera_M_contig121776.4476.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121776 197..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121776.4476.1

>prot_M-pyrifera_M_contig121776.4476.1 ID=prot_M-pyrifera_M_contig121776.4476.1|Name=mRNA_M-pyrifera_M_contig121776.4476.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MFYDAAQGLCWTWASPCAGSCSDLGYVNGFAPGDPALLPGSMSGWRIPTC
GEKAAGPTSPQLQATGCSSCIFDPSHDHCDFDDPVICGSVPNNSHETWLV
KPCSP*
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mRNA from alignment at M-pyrifera_M_contig121776:197..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121776.4476.1 ID=mRNA_M-pyrifera_M_contig121776.4476.1|Name=mRNA_M-pyrifera_M_contig121776.4476.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig121776:197..514- (Macrocystis pyrifera P11B4 male)
ATGTTCTACGACGCAGCGCAAGGTCTGTGCTGGACCTGGGCCAGCCCCTG
TGCCGGAAGTTGCTCCGACCTTGGCTATGTGAACGGTTTCGCACCCGGCG
ACCCTGCACTGCTGCCCGGTAGCATGAGTGGCTGGCGCATCCCCACCTGT
GGCGAGAAGGCAGCAGGCCCCACCAGCCCCCAGCTGCAGGCAACTGGTTG
CTCGTCGTGCATCTTCGACCCCAGCCATGATCACTGTGACTTCGATGATC
CTGTCATTTGTGGCTCTGTGCCCAACAACTCCCATGAAACTTGGCTGGTC
AAGCCCTGCTCTCCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121776:197..514-

>mRNA_M-pyrifera_M_contig121776.4476.1 ID=mRNA_M-pyrifera_M_contig121776.4476.1|Name=mRNA_M-pyrifera_M_contig121776.4476.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig121776:197..514- (Macrocystis pyrifera P11B4 male)
ATGTTCTACGACGCAGCGCAAGGTCTGTGCTGGACCTGGGCCAGCCCCTG
TGCCGGAAGTTGCTCCGACCTTGGCTATGTGAACGGTTTCGCACCCGGCG
ACCCTGCACTGCTGCCCGGTAGCATGAGTGGCTGGCGCATCCCCACCTGT
GGCGAGAAGGCAGCAGGCCCCACCAGCCCCCAGCTGCAGGCAACTGGTTG
CTCGTCGTGCATCTTCGACCCCAGCCATGATCACTGTGACTTCGATGATC
CTGTCATTTGTGGCTCTGTGCCCAACAACTCCCATGAAACTTGGCTGGTC
AAGCCCTGCTCTCCTTAGATGTTCTACGACGCAGCGCAAGGTCTGTGCTG
GACCTGGGCCAGCCCCTGTGCCGGAAGTTGCTCCGACCTTGGCTATGTGA
ACGGTTTCGCACCCGGCGACCCTGCACTGCTGCCCGGTAGCATGAGTGGC
TGGCGCATCCCCACCTGTGGCGAGAAGGCAGCAGGCCCCACCAGCCCCCA
GCTGCAGGCAACTGGTTGCTCGTCGTGCATCTTCGACCCCAGCCATGATC
ACTGTGACTTCGATGATCCTGTCATTTGTGGCTCTGTGCCCAACAACTCC
CATGAAACTTGGCTGGTCAAGCCCTGCTCTCCTTAG
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