mRNA_M-pyrifera_M_contig121772.4475.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A382VBM2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VBM2_9ZZZZ) HSP 1 Score: 90.9 bits (224), Expect = 2.670e-21 Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLPI 333
++ Y D GF++GG + SL++ W S + + ES+A + PP+ELLL+GCG+ +E+ PH +R+ LR I ++ ++T +A T+NVL +E RRVA AL+ I
Sbjct: 14 IDHYGDGGFRVGGERYEGSLIVAPEQVWPWTISDIAQLTAESVAAVLAADPPIELLLIGCGTRVERVPHDVRKALRARTIIVDGMETGAACRTYNVLMVEERRVAVALIAI 124
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A3S3N569_9MAGN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3N569_9MAGN) HSP 1 Score: 92.0 bits (227), Expect = 3.180e-21 Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
+GY+D GF + G + S+L++ + + W E + ESL++ L+P ++LL+GCG +IE LR LR + LE++D+R+A STFN+LN EGR VAAALLP
Sbjct: 58 QGYSDTGFTVNGVDYEGSVLVYEKLVMSWSPKKFSEITQESLSIFKILKPVPDILLLGCGRYIEPIDPELRRFLRSTGMKLEVIDSRNASSTFNILNEEGRMVAAALLP 166
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A7H1N6T3_9PROT (Uncharacterized protein n=2 Tax=Defluviicoccus vanus TaxID=111831 RepID=A0A7H1N6T3_9PROT) HSP 1 Score: 90.1 bits (222), Expect = 5.510e-21 Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLPIN 336
+ Y D GF++ G+ + SLL+F W T + SL+SL +TR + V LL+VGCG P +++ L K + LE +DT +A T+NVL LEGR VAAALL +N
Sbjct: 14 ITSYGDGGFKISGKRYEGSLLVFPNRTHPWPVVTLGDVSLDSLMPVTRTEEGVRLLIVGCGRQFSPTPLAMQQALFKLGVALEWMDTGAACRTYNVLVLEGREVAAALLAVN 125
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A0D2WX21_CAPO3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WX21_CAPO3) HSP 1 Score: 90.5 bits (223), Expect = 6.110e-21 Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLPI 333
++ ++ GF + G + S+ LF R + W + +E + ESL L + P +ELLL+G GS IE +R+ L++ I+LE+LDT A +TFN L+ EGR VAAAL+PI
Sbjct: 22 IDSFSSMGFTVNGVTYVGSMALFPRVPLLWNVKSVEELTPESLTLFHLVNPKIELLLIGTGSKIETIDPAVRQMLKEKRISLEVLDTPHAATTFNFLSQEGRLVAAALIPI 132
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A1Y1HLD5_KLENI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HLD5_KLENI) HSP 1 Score: 89.0 bits (219), Expect = 2.860e-20 Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
++ Y++ GF + G +++ F + +W S+ + + +SLA+ ++P ELL++GCGSH+ +R LRKH I LE T +A TFNVLN EGR+VAAALLP
Sbjct: 34 IDAYDETGFVVDGVDIRGAIVCFGNSTFRWNVSSIADVTPDSLAIFEAIRPAPELLVLGCGSHMVPVSKEVRSFLRKHGIGLEPESTANAAGTFNVLNEEGRKVAAALLP 143
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: UPI001929C19D (LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929C19D) HSP 1 Score: 89.4 bits (220), Expect = 3.500e-20 Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
+GY D GF + G + SLL+ + W E + ESL++ ++P E+L++GCG HIE LR +R + LE +D+R+A ST+N+LN EGR VAAALLP
Sbjct: 56 QGYTDTGFTVNGVKYEGSLLIIDNKLMSWSPKRFSEITAESLSIFQIVRPVPEILILGCGRHIEPVSLELRRFIRSTGMKLEAIDSRNAASTYNILNEEGRVVAAALLP 164
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A2D9HXS0_9PROT (Uncharacterized protein n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D9HXS0_9PROT) HSP 1 Score: 87.8 bits (216), Expect = 4.340e-20 Identity = 41/111 (36.94%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLPI 333
++ Y FQ+ G A+ +++F V W + A + SL++L+L+ + PP+E+LL+G G +E P LR+ +R ++++++ T +A TFNVL +EGRR AAAL+P+
Sbjct: 14 IDSYGPGRFQVRGIAYQGPVIVFPTHVVPWSLTRAADVSLDALSLVQQESPPIEVLLLGTGEWMEMIPSALRDTIRNAGLSMDIMKTGAACRTFNVLMIEGRRAAAALIPV 124
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A1U7ZWS3_NELNU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZWS3_NELNU) HSP 1 Score: 89.0 bits (219), Expect = 5.060e-20 Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
+GY D GF + G + SLL + W E + +SL++L ++P E+L++GCG HIE LR +R + LE +D+R+A ST+N+LN EGR VAAALLP
Sbjct: 58 QGYTDTGFTVNGVKYEGSLLCIGNLLMSWGPKKFSEITADSLSILQVIRPTPEILILGCGRHIEHVNPELRNFIRSIGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A835SG10_VANPL (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=3 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835SG10_VANPL) HSP 1 Score: 88.6 bits (218), Expect = 7.500e-20 Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
+ Y++ GF + G + SLL+ + W E + ESL++ L+P E+L++GCG HI+ LR+ LR I LE +D+R+A ST+N+LN EGR VAAALLP
Sbjct: 60 QRYSETGFTINGVKYEGSLLIVENKVMSWAPKRFSEINAESLSIFKVLRPVPEILVLGCGRHIDFVNEELRQFLRSIGIKLEAIDSRNAASTYNILNEEGRMVAAALLP 168
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A5P1F1K6_ASPOF (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F1K6_ASPOF) HSP 1 Score: 88.6 bits (218), Expect = 8.050e-20 Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
+GY D GF + G + SLL+ + W E + ESL++ L+P E+L++GCG +IE LR +R + LE +D+R+A ST+N+LN EGR VAAALLP
Sbjct: 63 QGYTDTGFTVNGVKYEGSLLIVENKLMTWAPKRFSEITAESLSIFQVLRPIPEILIIGCGKNIELISPELRRFIRSTGMKLEAVDSRNAASTYNILNEEGRMVAAALLP 171 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig121772.4475.1 >prot_M-pyrifera_M_contig121772.4475.1 ID=prot_M-pyrifera_M_contig121772.4475.1|Name=mRNA_M-pyrifera_M_contig121772.4475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp MGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCback to top mRNA from alignment at M-pyrifera_M_contig121772:72..513- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig121772.4475.1 ID=mRNA_M-pyrifera_M_contig121772.4475.1|Name=mRNA_M-pyrifera_M_contig121772.4475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=442bp|location=Sequence derived from alignment at M-pyrifera_M_contig121772:72..513- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig121772:72..513- >mRNA_M-pyrifera_M_contig121772.4475.1 ID=mRNA_M-pyrifera_M_contig121772.4475.1|Name=mRNA_M-pyrifera_M_contig121772.4475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig121772:72..513- (Macrocystis pyrifera P11B4 male)back to top |