mRNA_M-pyrifera_M_contig121771.4474.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121771.4474.1
Unique NamemRNA_M-pyrifera_M_contig121771.4474.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: L8HIK8_ACACA (UDENN domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HIK8_ACACA)

HSP 1 Score: 87.4 bits (215), Expect = 1.760e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 TLQTEVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILK 249
            TL  + +LA+LE+A V++AGFTD  ++   DLYD+ +D+ +R++ V +HA  DF++G FHKDLA  L+++  DP+VSA  I+K
Sbjct:  243 TLDPDSQLAELEQAGVFVAGFTDPGVRALPDLYDVLVDLDQRTVRVMDHAAPDFKMGAFHKDLATYLLQAAADPDVSAQAIIK 325          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: D3BSK6_POLPP (FAM45 family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BSK6_POLPP)

HSP 1 Score: 84.3 bits (207), Expect = 1.950e-17
Identity = 37/80 (46.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   13 EVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILKV 252
            E+E+ DL    VY AGF D+S+K+R+DLYDI ID++ + ++VA HA+  F LG FHKD+ +TL+ES ++ E++   ++K+
Sbjct:  224 ELEIKDLTATGVYCAGFIDSSIKSREDLYDILIDVNSKEVTVASHAKDQFVLGSFHKDILKTLIESADNEEINDQTLIKL 303          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: A0A1A8UE77_NOTFU (Family with sequence similarity 45, member A n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8UE77_NOTFU)

HSP 1 Score: 80.1 bits (196), Expect = 2.410e-16
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   10 TEVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILK 249
            T  EL DL+K   Y+AGF DA + NR DL+D+F+++ +R I+V++ A+    +GK HKD+A+ +V+S EDP+ S  +++K
Sbjct:  122 THAELEDLKKCPGYVAGFVDAEVSNRLDLFDVFVNLPDRVITVSQSAKEAMAMGKLHKDIAQVIVQSAEDPDKSDGQVIK 201          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: UPI000644E254 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E254)

HSP 1 Score: 81.3 bits (199), Expect = 2.650e-16
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   13 EVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILK 249
            E EL DL  A VY+AGFTDAS+K+R++LYDI +D++ + +SVA H +  F LG  HKD+ + L+ + +D EVS   ++K
Sbjct:  225 ESELKDLTTAGVYVAGFTDASIKSREELYDILVDLNSKEVSVASHCKDQFSLGSIHKDVLKMLLAALDDEEVSDQAVIK 303          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: A0A7S2B5V0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B5V0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.790e-16
Identity = 32/73 (43.84%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   13 EVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVS 231
            E E+ADLE + VY+AG  D S+++R+DL+D+ +D+S R +++AEH++ DFR+G  HK++A  +V+  E  +V+
Sbjct:  191 EAEIADLESSGVYVAGLLDGSVRSREDLFDVLVDVSAREVTIAEHSKDDFRMGDLHKEVATFMVQGAESDDVA 263          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: A0A1A8AVF7_NOTFU (Family with sequence similarity 45, member A n=7 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8AVF7_NOTFU)

HSP 1 Score: 80.1 bits (196), Expect = 6.680e-16
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   10 TEVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILK 249
            T  EL DL+K   Y+AGF DA + NR DL+D+F+++ +R I+V++ A+    +GK HKD+A+ +V+S EDP+ S  +++K
Sbjct:  218 THAELEDLKKCPGYVAGFVDAEVSNRLDLFDVFVNLPDRVITVSQSAKEAMAMGKLHKDIAQVIVQSAEDPDKSDGQVIK 297          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: F1A0B3_DICPU (UDENN domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A0B3_DICPU)

HSP 1 Score: 79.3 bits (194), Expect = 1.390e-15
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   13 EVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILK 249
            +VEL DL    VY+AGFTD S+K+R++LYDI +D+S + +++A HA+  F L   HKD+ + L+ S ED EV+  +++K
Sbjct:  230 DVELKDLTTTGVYVAGFTDPSIKSREELYDILVDLSSKEVTIASHAKDQFLLSSLHKDVLKFLLASLEDEEVTDQQVIK 308          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: DEN10_DICDI (DENN domain-containing protein 10 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=DEN10_DICDI)

HSP 1 Score: 78.2 bits (191), Expect = 3.670e-15
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   10 TEVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILK 249
            +++EL DL    VY AGFTD+S+K+R+DLYDI +D+S + +SV+  ++  F LG FHKD+   L++S +D E++   ++K
Sbjct:  230 SDLELKDLVSTGVYCAGFTDSSIKSREDLYDILVDLSSKEVSVSSQSKDQFILGSFHKDVLRFLLDSLDDEEITDQNVIK 309          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: UPI0006D92D93 (protein FAM45A isoform X2 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D92D93)

HSP 1 Score: 75.5 bits (184), Expect = 1.300e-14
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   19 ELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILK 249
            EL  L+    YIAGFTD  + NR DLYD+++++ E  I++A+HA+    +GK HKD+ + +++S EDP+ S  +++K
Sbjct:  119 ELEALKSCTGYIAGFTDPEVSNRSDLYDVYVNLVEGEITIAQHAKEAMTMGKLHKDIGQLVIQSAEDPDKSDNQVIK 195          
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Match: A0A8J4PSS9_9MYCE (UDENN domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PSS9_9MYCE)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-14
Identity = 34/79 (43.04%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   13 EVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHARTDFRLGKFHKDLAETLVESGEDPEVSALEILK 249
            ++E+ DL+   +Y AGF D S+K+R DLYDI ID+S + +S++ +++  F LG FHKDL   ++ES ++ EVS   ++K
Sbjct:  223 DLEIKDLQSTGIYCAGFVDPSIKSRDDLYDILIDLSSKEVSISSYSKDQFVLGSFHKDLLRFMLESLDNDEVSDQALIK 301          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121771.4474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HIK8_ACACA1.760e-1846.99UDENN domain-containing protein n=1 Tax=Acanthamoe... [more]
D3BSK6_POLPP1.950e-1746.25FAM45 family protein n=1 Tax=Polysphondylium palli... [more]
A0A1A8UE77_NOTFU2.410e-1643.75Family with sequence similarity 45, member A n=1 T... [more]
UPI000644E2542.650e-1648.10hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S2B5V0_9STRA3.790e-1643.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1A8AVF7_NOTFU6.680e-1643.75Family with sequence similarity 45, member A n=7 T... [more]
F1A0B3_DICPU1.390e-1545.57UDENN domain-containing protein n=1 Tax=Dictyostel... [more]
DEN10_DICDI3.670e-1543.75DENN domain-containing protein 10 n=1 Tax=Dictyost... [more]
UPI0006D92D931.300e-1441.56protein FAM45A isoform X2 n=2 Tax=Latimeria chalum... [more]
A0A8J4PSS9_9MYCE2.360e-1443.04UDENN domain-containing protein n=1 Tax=Polysphond... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121771contigM-pyrifera_M_contig121771:48..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog5786.XP_003293103.1
Preferred nameFAM45A
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Uncharacterized conserved protein (DUF2347)
EggNOG OGs2CEFC@1,2QVHR@2759,3XAX3@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.948795-CDS-M-pyrifera_M_contig121771:47..1451622815736.948795-CDS-M-pyrifera_M_contig121771:47..145Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121771 48..145 -
1692277545.528676-CDS-M-pyrifera_M_contig121771:47..1451692277545.528676-CDS-M-pyrifera_M_contig121771:47..145Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121771 48..145 -
1622815736.9609675-CDS-M-pyrifera_M_contig121771:283..4371622815736.9609675-CDS-M-pyrifera_M_contig121771:283..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121771 284..437 -
1692277545.5387092-CDS-M-pyrifera_M_contig121771:283..4371692277545.5387092-CDS-M-pyrifera_M_contig121771:283..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121771 284..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121771.4474.1prot_M-pyrifera_M_contig121771.4474.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121771 48..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121771.4474.1

>prot_M-pyrifera_M_contig121771.4474.1 ID=prot_M-pyrifera_M_contig121771.4474.1|Name=mRNA_M-pyrifera_M_contig121771.4474.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
TLQTEVELADLEKAKVYIAGFTDASMKNRQDLYDIFIDISERSISVAEHA
RTDFRLGKFHKDLAETLVESGEDPEVSALEILKV
back to top

mRNA from alignment at M-pyrifera_M_contig121771:48..437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121771.4474.1 ID=mRNA_M-pyrifera_M_contig121771.4474.1|Name=mRNA_M-pyrifera_M_contig121771.4474.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig121771:48..437- (Macrocystis pyrifera P11B4 male)
ACACTGCAGACTGAAGTGGAGCTGGCAGACCTCGAGAAGGCGAAGGTCTA CATCGCTGGCTTCACGGACGCGAGCATGAAGAACCGTCAAGACCTCTACG ACATCTTCATCGATATTTCCGAGCGCAGCATCAGCGTTGCCGAGCACGCG AGGAGTACGTCCCTTCATCTCCACACATATAACATACACCATCGCCAGAC ACCACCCACTAGCACGCCTCTCTGTCTGCCTGATTCTCGTTTCTTTTCTC TGCGTTCTCGCACACTACAGTCGAGCTGACGGTATTCTGCAGCCGACTTC AGGCTGGGCAAGTTTCACAAGGATCTCGCCGAGACGCTGGTTGAGAGCGG AGAAGACCCTGAGGTCTCTGCTCTGGAGATCCTCAAGGTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121771:48..437-

>mRNA_M-pyrifera_M_contig121771.4474.1 ID=mRNA_M-pyrifera_M_contig121771.4474.1|Name=mRNA_M-pyrifera_M_contig121771.4474.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig121771:48..437- (Macrocystis pyrifera P11B4 male)
ACACTGCAGACTGAAGTGGAGCTGGCAGACCTCGAGAAGGCGAAGGTCTA
CATCGCTGGCTTCACGGACGCGAGCATGAAGAACCGTCAAGACCTCTACG
ACATCTTCATCGATATTTCCGAGCGCAGCATCAGCGTTGCCGAGCACGCG
AGGAACACTGCAGACTGAAGTGGAGCTGGCAGACCTCGAGAAGGCGAAGG
TCTACATCGCTGGCTTCACGGACGCGAGCATGAAGAACCGTCAAGACCTC
TACGACATCTTCATCGATATTTCCGAGCGCAGCATCAGCGTTGCCGAGCA
CGCGAGGACCGACTTCAGGCTGGGCAAGTTTCACAAGGATCTCGCCGAGA
CGCTGGTTGAGAGCGGAGAAGACCCTGAGGTCTCTGCTCTGGAGATCCTC
AAGGTTCCGACTTCAGGCTGGGCAAGTTTCACAAGGATCTCGCCGAGACG
CTGGTTGAGAGCGGAGAAGACCCTGAGGTCTCTGCTCTGGAGATCCTCAA
GGTT
back to top