mRNA_M-pyrifera_M_contig12175.4467.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12175.4467.1
Unique NamemRNA_M-pyrifera_M_contig12175.4467.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: D7FPR8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR8_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.930e-47
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 QVSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQNRNDR 243
            QVSRLKHLTIDIGQEVR QNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTF+AIWYILKQ R  R
Sbjct:   49 QVSRLKHLTIDIGQEVRSQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFMAIWYILKQTRGGR 129
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: A0A835YRV7_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.090e-28
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 QVSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQN 231
            QVS LK LTIDIG EV  QN L+ GM   MFDA GLLGGT+++I TMM +GGS+HMCYLVAFIV TF+ IW+++ + 
Sbjct:   48 QVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 124
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: A0A1Z5KR69_FISSO (Blocked early in transport 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR69_FISSO)

HSP 1 Score: 85.5 bits (210), Expect = 1.670e-19
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    4 VSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQNRN 237
            V+RLK LTIDIG EVR QN L+ GM     + R LL  +L RI TM+  GG++HMCYLV F VF  V +W+++K   +
Sbjct:   62 VARLKGLTIDIGDEVRQQNSLLDGMNDGFQNTRDLLQSSLMRIGTMLESGGAKHMCYLVGFSVFVMVFLWWLMKYQSS 139
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: A0A7S0CDW0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDW0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.690e-19
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 QVSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQNRND 240
            QV+RLK LTIDIG EVR+QN L+  M       R LL G+LRRI  M+ QGGS+HMCY+V+FIVF    +++++      
Sbjct:   63 QVARLKGLTIDIGNEVREQNSLLDDMGDGFNSTRDLLAGSLRRIGNMLEQGGSKHMCYMVSFIVFVMFFLYWVMSYKGQS 142
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: B7G253_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G253_PHATC)

HSP 1 Score: 85.1 bits (209), Expect = 2.760e-19
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    4 VSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQNRND 240
            V+RLK LTIDIG EVR+QN L+  M     + R +L G+LRRI TM+  GG +HMCY+VAF VF  + +W+++      
Sbjct:   65 VARLKGLTIDIGNEVREQNSLLDNMGDGFENTRDMLAGSLRRIGTMLESGGMKHMCYMVAFCVFVMLFLWWLMSHKGTS 143
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: A0A7S2G7S7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7S7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.820e-19
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 QVSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQNRN 237
            Q+ RLK L+IDI +EV DQN ++ GM  QM  A GLL  TL ++ TM+  GGS+HM YL+ F+VF+F+ I++I+     
Sbjct:   46 QLGRLKELSIDINEEVADQNRMLDGMGNQMNSASGLLNETLGKLGTMLKSGGSKHMVYLIGFVVFSFIMIYWIMTHKSQ 124
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: A0A7S2UA83_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA83_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.770e-19
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 QVSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQNRND 240
            QV+RLK LTIDIG EV++QN L+  M     + R LL G+LRRI TM+  GG++HMCY+V F+VF  V +++++     +
Sbjct:  108 QVARLKGLTIDIGNEVKEQNSLLDDMGDGFANTRDLLAGSLRRIGTMLESGGAKHMCYMVGFVVFVMVFLYWVMTHKGTN 187
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: A0A4D9D9V6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9V6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.330e-18
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 QVSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQN 231
            QVS LK LTIDIG EVR QN L+  M        GL+G T+RR+N M+    SRHM +LVAF+VF F+ ++YI++  
Sbjct:   70 QVSMLKELTIDIGTEVRSQNHLLDDMGSGFLRTDGLMGSTMRRLNKMLTTSSSRHMLWLVAFVVFVFIFVYYIIRHK 146
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: A0A7S0FSK3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FSK3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.920e-18
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    4 VSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQNR 234
            V+RLK LT+DIG EVR+QN L+  M     + R LL G+L+RI TM+ +GG++HMCY+V F+V   V +++++   R
Sbjct:   66 VARLKGLTLDIGNEVREQNSLLDNMGDGFSNTRDLLSGSLKRIGTMLEKGGAKHMCYMVGFVVAVMVLLYWLMSSKR 142
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BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Match: A0A7S2R889_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R889_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.360e-18
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 QVSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFVAIWYILKQNRND 240
            QV+RLK LTI+IG EVR+QN  +  M+    +   LL G+LRRI +M+  GG++HMCY+VAF+VF  + +++I+      
Sbjct:   67 QVARLKGLTINIGNEVREQNSFLDNMQDGFANTGDLLAGSLRRIGSMLESGGAKHMCYMVAFVVFVMIFLYWIMTYKGQS 146
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12175.4467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR8_ECTSI1.930e-4793.83Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835YRV7_9STRA5.090e-2863.64Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A1Z5KR69_FISSO1.670e-1951.28Blocked early in transport 1 n=1 Tax=Fistulifera s... [more]
A0A7S0CDW0_9STRA2.690e-1950.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7G253_PHATC2.760e-1948.10Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2G7S7_9STRA4.820e-1948.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UA83_9STRA7.770e-1947.50Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A4D9D9V6_9STRA2.330e-1850.65t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S0FSK3_9STRA2.920e-1846.75Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2R889_9STRA9.360e-1845.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12175contigM-pyrifera_M_contig12175:2871..3848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue3.4e-36
Seed eggNOG ortholog2880.D7FPR8
Preferred nameBET1
KEGG koko:K08504,ko:K21412
KEGG Pathwayko04130,map04130
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005795,GO:0005798,GO:0005801,GO:0005802,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019905,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030173,GO:0031090,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0042147,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048280,GO:0048284,GO:0050789,GO:0050794,GO:0051049,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060627,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098827,GO:2000156
EggNOG free text desc.protein transport
EggNOG OGsKOG3385@1,KOG3385@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Exons2
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.6118722-CDS-M-pyrifera_M_contig12175:2870..29151622815736.6118722-CDS-M-pyrifera_M_contig12175:2870..2915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12175 2871..2915 +
1692277545.4007733-CDS-M-pyrifera_M_contig12175:2870..29151692277545.4007733-CDS-M-pyrifera_M_contig12175:2870..2915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12175 2871..2915 +
1622815736.6263802-CDS-M-pyrifera_M_contig12175:3647..38481622815736.6263802-CDS-M-pyrifera_M_contig12175:3647..3848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12175 3648..3848 +
1692277545.4142177-CDS-M-pyrifera_M_contig12175:3647..38481692277545.4142177-CDS-M-pyrifera_M_contig12175:3647..3848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12175 3648..3848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12175.4467.1prot_M-pyrifera_M_contig12175.4467.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12175 2871..3848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12175.4467.1

>prot_M-pyrifera_M_contig12175.4467.1 ID=prot_M-pyrifera_M_contig12175.4467.1|Name=mRNA_M-pyrifera_M_contig12175.4467.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
QVSRLKHLTIDIGQEVRDQNDLISGMEGQMFDARGLLGGTLRRINTMMAQ
GGSRHMCYLVAFIVFTFVAIWYILKQNRNDR*
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mRNA from alignment at M-pyrifera_M_contig12175:2871..3848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12175.4467.1 ID=mRNA_M-pyrifera_M_contig12175.4467.1|Name=mRNA_M-pyrifera_M_contig12175.4467.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig12175:2871..3848+ (Macrocystis pyrifera P11B4 male)
CAGGTGTCTCGACTCAAGCACCTGACGATCGATATTGGGCAGGAGGTGCG
TACACTAACACATTGGAGGATATGGTGGAATCATATTATCTTGTCTGAGC
CCCCTAGGGTCCGCGTCCCCGTGTTCAGTTCTCCTCCACTACAGAGTCCA
CGGGAAGAGCGGTCGAAGTGAAACTTGGTTCGTTTTTTGCTCAAGTGTTC
TGTCGCTAGGTACCGCACATTTTTTTGCCGAAAGCGCCAGGTTGGCGTTC
CGTTTTCTGCTTGTTGAGGTTACAGTATTGCAAAAATCGGACTTTGCCGA
ACAGCAACCATTCCGCAAGCTGGCACATCACGGTATCACGATGAAGTCGT
TTTTTTTTATAAGTTTGTATGTCTTCGTCGGCGATAACTTGCCGACCTAC
AATAGTAGAACCCCAACCGACGCGTAATGTTTCCGCTCAACACCGGCGTT
ATCCACGCGACCGTCTCATCTCGATACTTGTGGGAGCGATGAACGACGCG
GATTTTTGCAATCCGGCACACCGTGCCTGTTTCCTACCAGTTATTCGGAA
AAGTGGATGCGATTTGTTCCACGATAAAATGAGCCACCAACGACTGTGTG
GCATGCAGGAATATCGTCGAGTTTGACCGGACCAGAGCTTAGCCACCCGT
GGTCTCCCCATCGCATATTGAATTGTTGTAAACACATGAAGGCCTTCATA
TTTTTTGTGATAAATAGTGTCACCCCAACACCCACATGTAATATATACCA
TGTGCATTACCTTTGTCCTCGCTGCAGGTTCGAGATCAGAATGACTTAAT
AAGTGGAATGGAGGGCCAGATGTTCGATGCTCGAGGTCTTCTGGGAGGCA
CTCTGCGGCGGATCAACACGATGATGGCTCAGGGCGGTAGTCGCCACATG
TGCTATCTTGTAGCTTTCATCGTGTTCACGTTTGTCGCAATATGGTACAT
TTTAAAACAGAACAGAAATGATCGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12175:2871..3848+

>mRNA_M-pyrifera_M_contig12175.4467.1 ID=mRNA_M-pyrifera_M_contig12175.4467.1|Name=mRNA_M-pyrifera_M_contig12175.4467.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig12175:2871..3848+ (Macrocystis pyrifera P11B4 male)
CAGGTGTCTCGACTCAAGCACCTGACGATCGATATTGGGCAGGAGCAGGT
GTCTCGACTCAAGCACCTGACGATCGATATTGGGCAGGAGGTTCGAGATC
AGAATGACTTAATAAGTGGAATGGAGGGCCAGATGTTCGATGCTCGAGGT
CTTCTGGGAGGCACTCTGCGGCGGATCAACACGATGATGGCTCAGGGCGG
TAGTCGCCACATGTGCTATCTTGTAGCTTTCATCGTGTTCACGTTTGTCG
CAATATGGTACATTTTAAAACAGAACAGAAATGATCGGTAGGTTCGAGAT
CAGAATGACTTAATAAGTGGAATGGAGGGCCAGATGTTCGATGCTCGAGG
TCTTCTGGGAGGCACTCTGCGGCGGATCAACACGATGATGGCTCAGGGCG
GTAGTCGCCACATGTGCTATCTTGTAGCTTTCATCGTGTTCACGTTTGTC
GCAATATGGTACATTTTAAAACAGAACAGAAATGATCGGTAG
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